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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045802 ID=TCONS_00045802|Name=TCONS_00045802|organism=Clytia hemisphaerica|type=transcript|length=4634bpRun BLAST on NCBI protein sequence of TCONS_00045802-protein >TCONS_00045802-protein ID=TCONS_00045802-protein|Name=TCONS_00045802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1109bp MDLCLLSKLLALFHIQCIMLCHTFESTTNSQDVSPNTLEEHDDSSSSNFDRun BLAST on NCBI transcript from alignment at scaffold_101:79127..109712+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045802 ID=TCONS_00045802|Name=TCONS_00045802|organism=Clytia hemisphaerica|type=transcript|length=30586bp|location=Sequence derived from alignment at scaffold_101:79127..109712+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_101:79127..109712+ >TCONS_00045802 ID=TCONS_00045802|Name=TCONS_00045802|organism=Clytia hemisphaerica|type=CDS|length=66600bp|location=Sequence derived from alignment at scaffold_101:79127..109712+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045802 vs. Swiss-Prot (Human)
Match: SE1L3 (Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 2.027e-50 Identity = 238/979 (24.31%), Postives = 437/979 (44.64%), Query Frame = 2
Query: 557 GVYYEEISNAMPVKNVFFKHQFRYNFDEKISTNGTSIVNIPIPSQLIYYDHQNSTMFTNYFVS-KVEFKAMLV---ITDEQDGFE---------XXXXXXXXXXXXXQPPWDRDQKP-TYSFSWIGQIIDMLERRRIPKCQKHSDHKIISNIVPSLGQSSLGYLRKVQEARWPSHLPPALAQHLEHSVGMTITFWMFITKPCNSGGCFIIQQRNTTNFHSL-VVILNNEGKLHVQAHDSRGHGEAFVSLERLPHNKWIFVMIRVSVLDIKLKFNFNDQSHVYSYSRIYTSFNKGNNSFWASSGYFV------QETFSGYLAKFNVHQYESLDYQQYLKHFKDSDKQEINQIISEDSYQKCKAIKTMVNL---ALGHGILGKQTCSIE-EILYPKRPPNTCALKKKRPYWRELKALREKL--KVLRENWAKDKRDLHMMV-DVGAAIHKDVMKNLTK----KFTPDLMPLLNMAGCLGYGKSYFVLATIHQYGISNVEPNQDKALSYHLMAAQLSEPLSHLSLAYRYQLTHNGLLN-DLELQAAHTRQAAIITKNELDQEKYEINTQ-SELIRLDEANSYSDTRGGGSDLYKWLNQQAKMGSLEAKNQMADMLFHGKQGVEANQELAMEHFNDLA-DAGDPVAMVNLAVMHIKGINNMEKNVTKAKILLEKAVAKNSSFAYNVLGFIEIHYNQNATAAMHYWKKGVEYGDVQSTFNYASV--------MEQTNHTEALKYYEKAANQGDRHSIFRLAELLMEGTI--IKRDPQKALEYYKVIGEQHESLGWFMRHAMNHYLEGRRYSSIVNYXXXXXXXXXXXXFNMALLLKEMD-----YNKENTMHLFDAKPLFFVNFTAELGWSTSLVEMGD-QSWTKENDTQKASL---YYTRAVQKNDHPEALYSLGYLVENQFSIDHSIL----IESASHWKEVHGNLTYAAKLYQSCMASQSENQEGYFPCQLALFKVQLKSL 3319
V E +++PV ++ R+ ++ + T+ T IV++ PS ++Y D +YF+ + A++V IT + G + + + + + L PP++R K W I L RIP+C +D + + + G ++K R L Q +++ V T++ W+++ C + C I+ ++ + V L EG LH+Q H +G A + +P +W + I + I + + + SY SF + + + ++GYF+ G+ ++ SL Q + KQ QI + Y++C ++ +V++ A HG ++ C + L +R ++ + P+ +ELK L +L + R+ + V ++G I + +K L+ ++P L + C GY K+ + LA ++ G+ NV +Q + + Y L+ Q SE LS ++L Y++ + G+ N L+ + ++ + I TK LDQ + + E IRL + D++ WL +A G+ A+ ++A MLF G+QGV N E A+E + A + DP + + A++ KG ++KN A L++KA +K A N LG+ + +N A YW K E G+ +++N + + N T A +Y+ KAA G + + G + RDP+KA+ + K + E++ LG +R +N YLEG + +++ Y+LA E G++++ N+A + +E Y N + + +F ++ S + ++MGD + +N +Q L Y +A D + ++L L+E I H IL I+S H N++ +LY+ C + N+E + PC LA + L+ L
Sbjct: 115 AVVSSEFRSSIPV------YKKRWKNEKHLHTSRTQIVHVKFPSIMVYRD--------DYFIRHSISVSAVIVRAWITHKYSGRDWNVKWEENLLHAVAKNYTLLQTIPPFERPFKDHQVCLEWNMGYIWNLRANRIPQCPLENDVVALLGFPYASSGENTGIVKKFPRFR-NRELEATRRQRMDYPV-FTVSLWLYLLHYCKANLCGILYFVDSNEMYGTPSVFLTEEGYLHIQMHLVKGEDLAVKTKFIIPLKEWFRLDISFNGGQIVVTTSIGQD--LKSYHNQTISFRE-DFHYNDTAGYFIIGGSRYVAGIEGFFGPLKYYRLRSLHPAQIFNPLLE--KQLAEQI--KLYYERCAEVQEIVSVYASAAKHGGERQEACHLHNSYLDLQRRYGRPSMCRAFPWEKELKDKHPSLFQALLEMDLLTVPRNQNESVSEIGGKIFEKAVKRLSSIDGLHQISSIVPFLTDSSCCGYHKASYYLAVFYETGL-NVPRDQLQGMLYSLVGGQGSERLSSMNLGYKH---YQGIDNYPLDWELSYAYYSNIATKTPLDQHTLQGDQAYVETIRLKDDEILKVQTKEDGDVFMWLKHEATRGNAAAQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIVLFKG-QGVKKNRRLALELMKKAASKGLHQAVNGLGWYYHKFKKNYAKAAKYWLKAEEMGNPDASYNLGVLHLDGIFPGVPGRNQTLAGEYFHKAAQGGHMEGTLWCSLYYITGNLETFPRDPEKAVVWAKHVAEKNGYLGHVIRKGLNAYLEGSWHEALLYYVLAAETGIEVSQTNLAHICEERPDLARRYLGVNCVWRYYNFSVFQIDAP-----SFAYLKMGDLYYYGHQNQSQDLELSVQMYAQAALDGDS-QGFFNLALLIEEGTIIPHHILDFLEIDSTLH----SNNISILQELYERCWS--HSNEESFSPCSLAWLYLHLRLL 1053 The following BLAST results are available for this feature:
BLAST of TCONS_00045802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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