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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045811 ID=TCONS_00045811|Name=TCONS_00045811|organism=Clytia hemisphaerica|type=transcript|length=1237bpRun BLAST on NCBI protein sequence of TCONS_00045811-protein >TCONS_00045811-protein ID=TCONS_00045811-protein|Name=TCONS_00045811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp MAALQNAYNAVKSKALGVAEYMTPVLKESKFRETGVITPEEFVAAGDYLVRun BLAST on NCBI transcript from alignment at scaffold_101:40271..60940- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045811 ID=TCONS_00045811|Name=TCONS_00045811|organism=Clytia hemisphaerica|type=transcript|length=20670bp|location=Sequence derived from alignment at scaffold_101:40271..60940- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_101:40271..60940- >TCONS_00045811 ID=TCONS_00045811|Name=TCONS_00045811|organism=Clytia hemisphaerica|type=CDS|length=12402bp|location=Sequence derived from alignment at scaffold_101:40271..60940- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00045811 vs. Swiss-Prot (Human)
Match: ATG3 (Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3 PE=1 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 3.128e-132 Identity = 201/314 (64.01%), Postives = 237/314 (75.48%), Query Frame = 1
Query: 85 LQNAYNAVKSKALGVAEYMTPVLKESKFRETGVITPEEFVAAGDYLVHHCPTWHWAAGEESKRKSYLPADKQFLTTKNVPCYKRCHQMEYVLENEKXXXXXXXXXXWVDTHHNVDVSNLNEPASTDDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEDAATLSTTNTTKDTMQEAAASTKDGILQTRTYDLNVTYDKYYQTPRLWLFGYNETRKPLTIDQMYDDISQDHVNKTVTIEAHPHLPPPPMASIHPCKHAEVMKKIISTVQDGGGDIGVHMYILVFLKFVQAVIPTIEYDYTRHFAM 1026
+QN N VK KAL VAEY+TPVLKESKF+ETGVITPEEFVAAGD+LVHHCPTW WA GEE K K+YLP KQFL TKNVPCYKRC QMEY E E IIEE DGDGGWVDT+HN ++ + E E K + ++++++++ + A E E + D ATL T + + A +D ILQTRTYDL +TYDKYYQTPRLWLFGY+E R+PLT++ MY+DISQDHV KTVTIE HPHLPPPPM S+HPC+HAEVMKKII TV +GGG++GVHMY+L+FLKFVQAVIPTIEYDYTRHF M
Sbjct: 1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAVIPTIEYDYTRHFTM 314 The following BLAST results are available for this feature:
BLAST of TCONS_00045811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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