TCONS_00045817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045817
Unique NameTCONS_00045817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045817 ID=TCONS_00045817|Name=TCONS_00045817|organism=Clytia hemisphaerica|type=transcript|length=287bp
ACTCTGATTTAGGCATACAAACTTACAAGGTttacttttttacaaatttt
aggaAGAATATATAACTTTCAGTAGATCTTCTTTCCCAAAAGATGCCAAT
CTTTAATACCTTGCGAGTGCTTATGATGAAGAATTTGTGAGGATATTAGA
CTCGTTAGATGCAAATCAAACCTATTAAACAATCGAACGATTGAATTCTA
TCGAATCAGGGACAATCAAACAATAGATGTAATCGAACTGAAGATTCAAA
TAAAGTTTGATTACTGTTTGAATGCTTCATTAATGAA
Run BLAST on NCBI

transcript from alignment at scaffold_101:55936..56222

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045817 ID=TCONS_00045817|Name=TCONS_00045817|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at scaffold_101:55936..56222 (Clytia hemisphaerica)
TTCATTAATGAAGCATTCAAACAGTAATCAAACTTTATTTGAATCTTCAG
TTCGATTACATCTATTGTTTGATTGTCCCTGATTCGATAGAATTCAATCG
TTCGATTGTTTAATAGGTTTGATTTGCATCTAACGAGTCTAATATCCTCA
CAAATTCTTCATCATAAGCACTCGCAAGGTATTAAAGATTGGCATCTTTT
GGGAAAGAAGATCTACTGAAAGTTATATATTCTtcctaaaatttgtaaaa
aagtaaACCTTGTAAGTTTGTATGCCTAAATCAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029288XLOC_029288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045817-exon-scaffold_101-1491911889:55936..56222TCONS_00045817-exon-scaffold_101-1491911889:55936..56222Clytia hemisphaericaexon
TCONS_00045817-exon-scaffold_101-1510915933:55936..56222TCONS_00045817-exon-scaffold_101-1510915933:55936..56222Clytia hemisphaericaexon
TCONS_00045817-exon-scaffold_101-1575043694:55936..56222TCONS_00045817-exon-scaffold_101-1575043694:55936..56222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:55936..56222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61891	0.882252	2.04876	2.50549	3.05019	1.92824	2.32634	2.72236	3.04959	0.472176	0.458305	0.602544	1.20341	0.312439	0.513734	2.20526	0.339588	3.1326	0	0	2.62423	1.92001	1.55601	4.24393	0	0	0	0.66198	2.00835	1.0231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top