TCONS_00045818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045818
Unique NameTCONS_00045818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045818 ID=TCONS_00045818|Name=TCONS_00045818|organism=Clytia hemisphaerica|type=transcript|length=498bp
AACAATTAATATATTTCATTATATTGATAAAACTTACatatttacaaata
aatttaCTCTACTTGAGTCTATATATTAACAATTAAAAGTAGTAATTAGC
AGCCAACTTTTTCAATAACATGATCCACCAAATCACGTTTGTTTTCATGG
AAAAAAGCACTTCAGTTCAATTTTGTACATTATAACTAAATAATCCATAT
TTTAAGTTATCGTAGGAATACAGTAGATTAATTTACCATATTATTCATAC
AATTGAAGTTTGTCTCCAATTTCATCCTCGTTGTTGCCTTTGTTGACCAC
TGTCTTGTGGTTGGAAGGATGGTTTCGGCTGAGAACTGATGACTTTTGTC
TGATTTTTACtttgataaacttctttctcCTTTTCCTCTTTTCCGTTACA
ACAACACCAAAATCCCATTTTGAAGTGAGTAAGCTCTGCTTTACAAAGTC
GATATGAGATTTCTTCTTCAAACTGCTACCAACCTTCACAATGATGAC
Run BLAST on NCBI

transcript from alignment at scaffold_101:95055..95552

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045818 ID=TCONS_00045818|Name=TCONS_00045818|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_101:95055..95552 (Clytia hemisphaerica)
GTCATCATTGTGAAGGTTGGTAGCAGTTTGAAGAAGAAATCTCATATCGA
CTTTGTAAAGCAGAGCTTACTCACTTCAAAATGGGATTTTGGTGTTGTTG
TAACGGAAAAGAGGAAAAGgagaaagaagtttatcaaaGTAAAAATCAGA
CAAAAGTCATCAGTTCTCAGCCGAAACCATCCTTCCAACCACAAGACAGT
GGTCAACAAAGGCAACAACGAGGATGAAATTGGAGACAAACTTCAATTGT
ATGAATAATATGGTAAATTAATCTACTGTATTCCTACGATAACTTAAAAT
ATGGATTATTTAGTTATAATGTACAAAATTGAACTGAAGTGCTTTTTTCC
ATGAAAACAAACGTGATTTGGTGGATCATGTTATTGAAAAAGTTGGCTGC
TAATTACTACTTTTAATTGTTAATATATAGACTCAAGTAGAGtaaattta
tttgtaaatatGTAAGTTTTATCAATATAATGAAATATATTAATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029289XLOC_029289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045818-exon-scaffold_101-1491911889:95055..95552TCONS_00045818-exon-scaffold_101-1491911889:95055..95552Clytia hemisphaericaexon
TCONS_00045818-exon-scaffold_101-1510915933:95055..95552TCONS_00045818-exon-scaffold_101-1510915933:95055..95552Clytia hemisphaericaexon
TCONS_00045818-exon-scaffold_101-1575043694:95055..95552TCONS_00045818-exon-scaffold_101-1575043694:95055..95552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:95055..95552 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.119711	0.694978	0	0	0.130819	0.315656	1.62532	4.03446	23.8334	10.4473	4.66019	28.9836	26.2843	0.557659	0.374034	0	0.0944567	13.0497	40.6936	0.118692	0.521043	1.40755	1.27966	7.11733	8.46939	1.68329	0.71858	0.136254	0.277643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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