TCONS_00045819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045819
Unique NameTCONS_00045819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045819 ID=TCONS_00045819|Name=TCONS_00045819|organism=Clytia hemisphaerica|type=transcript|length=264bp
gcgatttttaaaaaaaaacttagaaaaaaagaccctggcactcaaagggt
taagaaGCGGCTAACAAACCCAAGTCATCTGAGATTTCTATTAAAAAAGT
CGTCCTTGCTGAGGCCGGGAAAATATCTGGTTTCCGAGTTTATCTTTAAA
TCACTTATCGGGCTACATAAATTAACGCTAGTGAAAAATGTCTTTGTTCT
TACAATTAGTATCTCTACTTGAAGGTGCTAAGATATATAATTGCCAATAA
ATTgtgataaaata
Run BLAST on NCBI

transcript from alignment at scaffold_101:161380..161643

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045819 ID=TCONS_00045819|Name=TCONS_00045819|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at scaffold_101:161380..161643 (Clytia hemisphaerica)
tattttatcacAATTTATTGGCAATTATATATCTTAGCACCTTCAAGTAG
AGATACTAATTGTAAGAACAAAGACATTTTTCACTAGCGTTAATTTATGT
AGCCCGATAAGTGATTTAAAGATAAACTCGGAAACCAGATATTTTCCCGG
CCTCAGCAAGGACGACTTTTTTAATAGAAATCTCAGATGACTTGGGTTTG
TTAGCCGCttcttaaccctttgagtgccagggtctttttttctaagtttt
tttttaaaaatcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029290XLOC_029290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045819-exon-scaffold_101-1491911889:161380..161643TCONS_00045819-exon-scaffold_101-1491911889:161380..161643Clytia hemisphaericaexon
TCONS_00045819-exon-scaffold_101-1510915933:161380..161643TCONS_00045819-exon-scaffold_101-1510915933:161380..161643Clytia hemisphaericaexon
TCONS_00045819-exon-scaffold_101-1575043694:161380..161643TCONS_00045819-exon-scaffold_101-1575043694:161380..161643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_101supercontigscaffold_101:161380..161643 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.66105	1.20586	0.70006	3.09434	0	0	1.58982	0	2.70243	0.681422	0.626411	2.05889	0.831771	0	1.80032	0.376769	0	1.42721	2.68434	0	1.10736	3.48441	0.730139	0.684719	0	0	0	1.09106	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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