|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045821 ID=TCONS_00045821|Name=TCONS_00045821|organism=Clytia hemisphaerica|type=transcript|length=3663bpRun BLAST on NCBI protein sequence of TCONS_00045821-protein >TCONS_00045821-protein ID=TCONS_00045821-protein|Name=TCONS_00045821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=637bp MSRITPQESYNLAKHYRQDTSSRMTQALPDDLIQDLKEQFQEFDKDGNGFRun BLAST on NCBI transcript from alignment at scaffold_102:33488..45723+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045821 ID=TCONS_00045821|Name=TCONS_00045821|organism=Clytia hemisphaerica|type=transcript|length=12236bp|location=Sequence derived from alignment at scaffold_102:33488..45723+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:33488..45723+ >TCONS_00045821 ID=TCONS_00045821|Name=TCONS_00045821|organism=Clytia hemisphaerica|type=CDS|length=22968bp|location=Sequence derived from alignment at scaffold_102:33488..45723+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045821 vs. Swiss-Prot (Human)
Match: PLST (Plastin-3 OS=Homo sapiens GN=PLS3 PE=1 SV=4) HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0 Identity = 339/627 (54.07%), Postives = 448/627 (71.45%), Query Frame = 3
Query: 1206 TQALPDDLIQDLKEQFQEFDKDGNGFINAKELGDAFAACGNTVPGYKLREIISQV----DKDKNGKVSFDEFIEIYKQTTSKGVFGEWKSSVTKKQGINVLE-SSEASASGTTHSASEAELIAFTDWINTQLKTDPDCAKYIPLNKQ--NMTEALKDGIILCKMINLSAPKTIDERAINKTKLSAFRVQENNILVINSASSIGCTVVNVHAEDXXXXXXXXXXXXXXXXXXXXXFANITLQSNPNIAVLLEEGETIEDLLKLSPEQLLLRWVNYHLRKSGSHKRINNFSGDIKDSEAYSILLNQIAPNSGMDSSERM------IQSGDNMKRAEMVLKNADRINCKKFVSAKDISTGNQKXXXXXXXXXXXXYPALDPADMEEVEEFEPYIETREEKTYRNWMNSLGVDPGVNHLYHDMSDGYILFQLYDQIRKDTVNWNKVNKPPYKIATAGTMKKIENCNYVVELGKQ-NNYSLVGIGGQDIHKGTHTLILALVWQMLRDYTMTVLGKLTESSGAIKDKEIVDWVNHKLTDAGKTSHISSFKDPSISSGIAVIDLVDAIYPGSIDYELVTPGE-TAEDKESNAQYAISMSRKIGARTYALPEDIVEVKPKMLLTVFASLMTRGLQ 3041
T + D + +LKE F + D + NGFI EL + F +PGYK+REII ++ D++K+GK+SFDEF+ I+++ S + ++ ++ +K+GI L +SE S+ GT HS SE E AF +WIN L+ DPDC IP+N ++ +A+ DGI+LCKMINLS P TIDERAINK KL+ F +QEN L +NSAS+IGC VVN+ AEDL GK HL+LGLLWQII+IGLFA+I L N +A LL +GET+E+L+KLSPE+LLLRW N+HL SG K INNFS DIKDS+AY LLNQIAP + R+ D++KRAE +L+ AD++ C++FV+ D+ +GN KLNLAFVANLFN YPAL + ++++ ETREE+T+RNWMNSLGV+P VNHLY D+ D ++ QLY++I K V+W+KVNKPPY MKK+ENCNY VELGK +SLVGIGGQD++ G TL LALVWQ++R YT+ VL L + A D IV+WVN L++AGK++ I SFKD +ISS +AV+DL+DAI PG I+Y+LV G T +DK +NA+YA+SM+R+IGAR YALPED+VEVKPKM++TVFA LM RG++
Sbjct: 6 TTQISKDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKVREIIQKLMLDGDRNKDGKISFDEFVYIFQEVKSSDIAKTFRKAINRKEGICALGGTSELSSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQK-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFNKYPALTKPENQDIDWTLLEGETREERTFRNWMNSLGVNPHVNHLYADLQDALVILQLYERI-KVPVDWSKVNKPPYP-KLGANMKKLENCNYAVELGKHPAKFSLVGIGGQDLNDGNQTLTLALVWQLMRRYTLNVLEDLGDGQKA-NDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMK 628 The following BLAST results are available for this feature:
BLAST of TCONS_00045821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.