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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045822 ID=TCONS_00045822|Name=TCONS_00045822|organism=Clytia hemisphaerica|type=transcript|length=504bp
cggtcgtggcttcttcgtacGGGTGAGAGTAGATCTTGTATTTTTCTATC
TTTGATCTGGAGTTTTCTGGAGTTTCTGAACCTTTAGGATGTTTCTAAGT
TGGACTTGGTCAATTTTAGAGTTCaactttgatattttgaaatttgccaa
aatgGGGTTCTGGGTGGGATTCGAAGagaagaactgaaaaaaaagaagaa
ctgaataatcgatattttttttcatttctgccAGTACCTTAGGTCGTACC
GCCAATCGTAACTCCCATGAACGTTTGGTGCTTTTAAAGCCGCCAAACTG
CAAACTCCTTTGGCCTGCTTTATGTTACTTGGTTAATTACAATACATCAA
ACTCATGGTGATCGACAATCAAATGAGTTCAAAGCCatcgaaaaagaaat
tctagaTACCATGGGTTCAGCGTTGGACATTAATAATACGGCTACCAAAA
TCCAAATCATTAACATCAGACCAGGCAGTGTTATTGTGGATTTACAGATT
TTTG Run BLAST on NCBI transcript from alignment at scaffold_102:46993..51339+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045822 ID=TCONS_00045822|Name=TCONS_00045822|organism=Clytia hemisphaerica|type=transcript|length=4347bp|location=Sequence derived from alignment at scaffold_102:46993..51339+ (Clytia hemisphaerica)
cggtcgtggcttcttcgtacGGGTGAGAGTAGATCTTGTATTTTTCTATC
TTTGATCTGGAGTTTTCTGGAGTTTCTGAACCTTTAGGATGTTTCTAAGT
TGGACTTGGTCAATTTTAGAGTTCaactttgatattttgaaatttgccaa
aatgGGGTTCTGGGTGGGATTCGAAGagaagaactgaaaaaaaagaagaa
ctgaataatcgatattttttttcatttctgccAGTACCTTAGGTCGTACC
GCCAATCGTAACTCCCATGAACGTTTGGTGCTTTTAAAGCCGCCAAACTG
CAAACTCCTTTGGCCTGCTTTATGTTACTTGGTTAATTACAATACATCAA
ACTCATGGTGATCGACAATCAAATGAGTTCAAAGCCatcgaaaaagaaat
tctagaTACCGTAAGTATACCCCCTTCTTACAGAccaactggaaaaattg
gtcaaaatatcgtccccagtgaaaAATTATCCTCCAGTTTTTGTCCcgac
tgaaaataatcagataagcaaaatcgtaactgcaaaatattatgctattc
ttcccatccccactgaattttctgacttgaaaacaaaataattgaaatcc
ccagccataaaaaatatgggaatatcaattcccatcgagttttagtccgt
tatttctacccccactggctgaaaaaatcctaccgggtctgtgagaaggg
gctgTGTAAGTCCAGTAGAGATTTATGTTTTTTGAGTGAGTAACAAATTG
GCAGTATCGCTCTTTTTTTCACCACTTGTTTTGAGCTTGCTTTcgttaaa
attattttagtcaACAAATTGTTGCGACAATCCTAACCACTTGTAACTGA
CTTGAACCCAAGCAAGTGTAACCGAAGGCTAGAAGTGAATCTAGGCTGGC
ATTTGCAGCCACTCATTTTCTACTTTAACTTTGCGGCCCGCGTAGTTTTC
ACTAGACAATGTTATCGTTCGTTACAGTGATAGCAAAGGTGGGGAAATAT
GGTGGtttggcgttatggcggtattcGGAAAAAAAAGGCGGAAGAGTTTC
GAAgagactggcaaactctaccggctgtaaactcttttcggcaaaaaaaa
aattttcttcggcttttgGATTATTTCTTAGATAGCGATTTGCCTTAGAC
TAAAGCATAGTCTAGGTTTTCACATGAATATTAGATTTGAAGTGACATTT
AATTGCTTAATTGCCTGAACCCACCAATTCAGATCTTTTTCAATATCATT
ATGTTTCAGATGGGTTCAGCGTTGGACATTAATAATACGGCTACCAAAAT
CCAAATCATTAACATCAGGTAATTAGAAATTAGAAATCGGTTCGTAGAGG
TCTACCTCGGGCCTGTGAACTTCTACATCATCATAAtaataccgtaactt
ggtctaacgtcgacacccctcctctaattccgaccccctctttatcagct
gaaatttatagaaaggtcaaaacgaataatccttttttcaatcagtgatt
caaactttcatattattcctttctctaaagaagggtgtcggaattagacg
agggatgtcgatattagaccaacttactgtactaactagtcatagctttc
actaaatgcccacgcagaagatcatgtcatccacttataaagcttttact
gcttttaatgctttaaaaattaaagcattaaaaataatcaggaataattg
attgatttaattattgaatgattgattaattgattgaggcatatgcttga
aaaaaaattatattccataaACACAATaattgaagaattcatgcagcttg
ataatttgataaaatttgaggaaaagcttctcaaaaatatatttcaaaaa
ttatggtatcattagcttactggttttcacatctcctgtttgtttttttt
tctctcagtttctttcttacaacaatatatgtcatgactattattcacaa
tagaccttttctgataatgccgcagacatcttagattgtaggcaaaatat
atggcgatgaataaataaacaaggaaaccaatcagaaatagcttgctttt
ttcattggttgctatatttcaacaattctctagtgctactttgcctaata
aacaatagtcaagagaatactacgtataaaatttatcaaaaagttctgcg
ccatcttaaattgggtgaaatagaaaccaatcctagttgaGGCCCGGGCT
CCTCttgtgtacgctgtgattgcgCTTCTCAAGTAAAATcttatgttgtt
ggtcaaaagaaaaataaaggaatgccattgtgctCTATTCAGACTTACAG
Tcgagaaaatttgaaatgcgctttaattttttttcaagtgcatagtactt
tttcatgatgcaatcttttctccaagctgaaaggatcgaagccaataaga
tgatcgcagcgcagacaatgaagagacgtgcctccaggaagctagacttt
ttgagtttatagctatatacttttactttatTGTGTTTCCGTATGAATGT
CTGTGtatctagtctaaccaccgttaaatgccttcgggaaggtccctcct
aacttggaatgccagaattggagctatttcaccaaaccactggagcgtaa
gttatttagaaaaagttgaatatgggcatgtaaagttaaacgaatgttag
caaacttttttcaggtttttgaaatagattttagcgcactgaaaaaacag
tgaatacactctaagtgaggtaaatctattttgaagaccaaaagaaaaag
tttgtttacattgattgacattcaacattcattcaaccacttttggattc
aactttacatatggcAATACatacattcaacatttttgtactttgccggt
atcttgttttactaagttaagaaggactttctcgagttacgaccatatga
tggtatttaaagctcaagaagctctNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATCAAATGTACgtacattaaaaaacttgagcaaat
ttctttaaagattccagaaaaagaattgaaatcattgctgaaatgaactt
ctgattaaattacagtatttagtattcagtttcatagaccagaaacaaaa
tttgacatacaaaacactttttccagtcaatgaatcagctcatcatcata
accagtctaccattttgtttgttttgatttgcacaagtaatattgtaatt
cgtgtgtatatcatacactgttataatttgcatttataacactcgcttca
gcttttcaaaggtaaattaaaactaataaattgtaatatgtaacaatggt
aatagcatacaacgtaatatgaaaatatgcatactactgtcccgaaaaaa
aaccgaacatttacggaagagactaactacggggatgcttgcgcgacaaa
acacaAACAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcaacaaaaacaacaaaatttcgagat
tccagtccaatatctatgcgtgaaactatgagtgcctcctcgtcgctgcg
ctcctgcgggggcaataataataataagtcATTCTTCTTCGGATGCCATT
TCTAGCTGTAAGATGAGAGTGAGTATACCACCAAAAGGTTTCTCTTTCAA
GcaaattttctcgagttctcgAATTTTAGACTAATATAAATCTTTCTcca
ttgaaaaaagaaagaaagtttaaATTTTAACGGACTTTTTATTGCAATGG
TTATTGGATCAACATTTGTACTCAACTGAATAAACATTCTTGATATTGGT
TCAAAATCTAAAAgtctgaaaaatatttcatttactTTATGActtttata
taccctggacatcCCGATCAAGCATaccttttttgaaagtggtacctaat
ggtagcactactcgatGTTGCtggattgaataacaaattGACCCACGTCA
AATGGTCCTACCGTTAGGTCACCACTTCtctaaaaactccgatcaaagat
ggcggatatagcttggtccagggtttatATAAGTCAGTGTTTGGTGATTT
TAACAAATAATATCATAGATCTTTCTCTAACATAACACCATTCTGCTTCG
TTTCCTTTACAGACCAGGCAGTGTTATTGTGGATTTACAGATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045822-exon-scaffold_102-1491911889:46993..47402 | TCONS_00045822-exon-scaffold_102-1491911889:46993..47402 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1510915933:46993..47402 | TCONS_00045822-exon-scaffold_102-1510915933:46993..47402 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1575043694:46993..47402 | TCONS_00045822-exon-scaffold_102-1575043694:46993..47402 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1491911889:48252..48310 | TCONS_00045822-exon-scaffold_102-1491911889:48252..48310 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1510915933:48252..48310 | TCONS_00045822-exon-scaffold_102-1510915933:48252..48310 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1575043694:48252..48310 | TCONS_00045822-exon-scaffold_102-1575043694:48252..48310 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1491911889:51305..51339 | TCONS_00045822-exon-scaffold_102-1491911889:51305..51339 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1510915933:51305..51339 | TCONS_00045822-exon-scaffold_102-1510915933:51305..51339 | Clytia hemisphaerica | exon |
| TCONS_00045822-exon-scaffold_102-1575043694:51305..51339 | TCONS_00045822-exon-scaffold_102-1575043694:51305..51339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:46993..51339 + |
Blast
The following BLAST results are available for this feature:
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