TCONS_00045835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045835
Unique NameTCONS_00045835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4106

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045835 ID=TCONS_00045835|Name=TCONS_00045835|organism=Clytia hemisphaerica|type=transcript|length=4106bp
TGGGTGACTCTGAAATCAAAAAGGTGTCCCAAATTGGTATCCCAAATAGA
CATTTTCGAAACAATCATGTACAATATATAACTTATGACAaagatgttat
tatttttttccactTTTATGAAGATATTATAAAGTAttaaaatgtatata
ttttgatttttgtagtgaaataatcaaaagaaaaattttatttacaaaat
ctCTTATCATTCAAGAATGAAGTAATAGGTAATTAAGATGTATACAATCG
CTCCCATCCCAGGGCGATTAGCGTGACTGATGAGGCTTCTTTCTTGCATG
ATGCGGGATCAGGAAATTTTCGCAATCGTGACGAAACCAAAAATTAGAAG
AGATGGTCTCGTGATaatctgtaccagagtgtatctcacgattatcgtag
cctagtgcaatgaattttgaaattagccgtagatatcgggtttgtgtaca
gactagTCTCGTGAGGGGTCCTACTCCATTTAGTATTCATAAGAGGGATG
GACTAACCTTTTCAAGCCACATGTAATTACCCCctgaatttttttctgga
aatttttcttgCATGAAAGGGAATGGCCCcagtaaaaaagtttaaaggTT
TGATAGATACCTTTTGTTAGATTGGGCTTGTAGCTACAATCAGCACCGAA
AAatattgaccatttttggtattttaacgtttttcagaatttaaaggtca
AAGCGAGAATTGCAGGTTCAGTATTTCCACTTTGCTTCATCggaattttt
caatttaggaGTGGCTTCCAGACTATATTCTctgccttattggaacattt
ttgagcttttagaacCTGAAATCCTAAGGTCCAAACTCTTAAGTCTAATT
TCAATACTCAGaattaaaactctacttccgaactgtacttcaaagcactt
aaaaatcacttgcggttttaaagttttaagagaattccccttttttgcca
aatatttcggcgccgattgtagCAAAATTCTTAAAGCTCTGATAAAATTA
TGAACTCAATTAAGGGACTGGAGTTAAGTGCTACATGTTACTTCGTAAGA
AAAGATTCAATAGATTTTTAAAAGTCGAATAATTGAAAGATGTATTATAA
TATAACTGTTGATCTATATGATATAAAATTTCGTGGAATAATATTTTCCT
ATAATATAAATGAATTAcctttaaaacataaaaattgaaaattaaagaaa
agttACCCCCGCATTAAAATTTTTACCGAGTCTAAATAGCAGAATaatgg
aaaattaaaaattagttGCCATTTTTAAAATTATCATACATTGGCTAAAC
AATATAGTATtggttttaaaaatattatcttGGATAAAACATAAAATGGC
TTTATCTATATCTAAAGCATATATATAGCTTCACGTGCTAAGGTCTTCAA
AaattggcactttgagcctcgaATTTTACTCAGCATTCTCTTATATTAAG
GGTGATTTGAGGTAGTCTTAACTCATTCTACTAAGTTTAGATTTTCTTAA
GAATCAATCATTCAAGGCTCAGGATTgtcctcaaattgttcttatttctt
gGCGCTTTTGAGCCTCGTTCGTGTTCTTAAAAACTATTCTTCTCGCTTAT
TCTTGTCAAACAGAAGTATTTTACCATCTTTTTCATGtaccttgaaaaaa
aatctctttgatcGATAATTAATGAGATAGTAGAAACTTCCCTGTGAAAA
ATATTACTGATGACAAGTATGACATAATGCTAATAAACACATTTAAAAAC
ATGTGCTGATAAGAGATTTGATAGATCTGTTAACAACAAGCTGACATCTA
TTCGTACATACTAATTATCAGTAATTTGGCAAACATGTTAGAATGAAAAG
ATTTCTAGTAAATTTTGAAGATTAGATCTATCCCTAGATTTTAAACCTTT
AAAATGAAAACTATGTAAAACTACGAAATTAAAACGTAAAATTAATATGA
CTAAAGGCAAATCTCAGGCCAAGTATTGCTTTAACGACCACTTCATTCTA
ACCTGAAGTCCACCATTCGCTATTTAATGCGTGCAATCTTTTTTTCTACC
ATTATGGAAACCGCTTGAAAGGAATCAGCCTTTACGCTAACATGGTTTTT
GTATGGTCGcgaaaaagagtgcacactaaAGCGAATTGACTTCAgaacat
aacgttgtttcaacattcatttAACGTTTTAATGGACGTTAGATATTATG
CTGTTTTGACATTTTGTGTCAGTCCGTTTGGTTTAGGCTTATTttgagta
catgttttttttttataagcattgcacttataagcatatctaggctcaga
tatgggaaaaaattaagcatatggcaagcattacttgagcctacgaaaaa
tgtttttttcctgattttagctttttttggctcgaattttacggattttc
agtatttccttaaatttaaggtttagatttaagcatcccctcaagcattt
ttcagcctttttaAGCTTTCGACCTGAGCATTTCGGagcctgttttcaaa
tttttgtatgcttataaataaaaaaacaagtatttaAATTCTAATTTCTA
AATTTGTTCTAAAGAAAAGAGTTAATGCTAAGATTTTAAGATTGCTAATA
ATTTACGTGTTGACAGAAAAAACAGTTTTTACAGACTTTGAAAGTCAAGA
AATGTCaaacaaaaatcacaaattttaacTACTACATAGCACATTGACCA
TTTTGACAGCATTTTATTCAATTGCTACAATTCCTTCTCTTTCCAAATAA
TTGACCCCACATTATAATGTAAGGGTCTACACCTTCAAACCTAGTGTTAA
ttaaaagtctaaaaaatagtattaaaaagataaattagtTCTTTGATATT
ATATTCCATGAATCTAACTGTTAGCAAATACAGTGATAtctcaaaaaaag
atattccaaTTTTGTAGTAATCTTGCCTTTTGAATCTTACATCATCTAAT
AATCAAGACTTTTCTCTAGATCTAAATTATTTGGAAAGCCACACATACCA
ACATTTCTACAAATTATTAAATTCATCCAATTTTGATCTCCAATCAGAAT
TCTGTTTGACTTCTTTACGTTTCGGTGTTTTCATAAACATCTTTTTAAAA
GAGTCCTTCTTAGATTCTTTATTAGAATCCTTTTCAACAACTTTTGTATC
GATTGGTGGTTGCTTTTTGCTCTTTCCTTCAAGAACACTAAATTGTTGCT
CAATCGGAACAACAGGCTCTGCAGATTCTTGTTCTGGTTGAGGAGAATCT
GGCATTGTTGATTCATCTTGCGGTGCTTCTATCACAGATCCCTTTTCTGC
CGGAGACTCTATCACAGATCTCTTTTCTGGTGGAGGTGATTCTAGAATTG
CATAATCTGGATCTTCTGGTTGTGATATATTTTCATCTAGTTGTGATATG
TTTTCATCAGGTTGGGATTCTTCAGGTTGGGATTCTTCAGGTGGTGGATC
TTGATTAGTAGGCTCTTCTGGTTCTGGTGAGATTGATGTATGTGAATTTA
GAGGTGGAGATTCAATGTCTCCTGGGACAGATGAAATTTTCTCTGACTCA
GGTGTGTCTCCAGGGGCCTCATTTTCTGGCTCTTCACCATTTGATGGTAA
CGAATCTGAATCTTGTAATtcaacattttcatcttcaacaCTCAATTGCG
TATTACCATCATCATCAGCATCATCAGTAacattttgttgttgttcaGCT
TGGAGTCTCAACTCCTGTAATTTCTCAGCTTCTTCTATTGTAATTTCATG
AACAGTAGTATAAGTGGCAAGGGCAGATGTAACAGGTCTGTTAATCTTTT
TCAAATAGTTATCAGTGATTTTATCCACTACCAAAAGAATAGCTTTTTTA
GGATCAGTGCGGATTTGTTGGACCACTTCTCCATGAGACATTGCTTCAAC
ATTGACTTCATTGACTTCGACAACGCGATCACCAACACATAATCCAGACT
TCTCAGCTGCGCTTCCTGAAAATTAGAGGCAAGATATTACACCCTTGTGT
GGCTTCTAGCACTACATTTATCATATCACAGAATTCTGCATATAAAATTA
AAATAGTGAGTTTCTGCCAAAAACGCAAAAGCCGTAGCGCCAAAATTAGG
GCTAGT
Run BLAST on NCBI

transcript from alignment at scaffold_102:232213..236413+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045835 ID=TCONS_00045835|Name=TCONS_00045835|organism=Clytia hemisphaerica|type=transcript|length=4201bp|location=Sequence derived from alignment at scaffold_102:232213..236413+ (Clytia hemisphaerica)
TGGGTGACTCTGAAATCAAAAAGGTGTCCCAAATTGGTATCCCAAATAGA
CATTTTCGAAACAATCATGTACAATATATAACTTATGACAaagatgttat
tatttttttccactTTTATGAAGATATTATAAAGTAttaaaatgtatata
ttttgatttttgtagtgaaataatcaaaagaaaaattttatttacaaaat
ctCTTATCATTCAAGAATGAAGTAATAGGTAATTAAGATGTATACAATCG
CTCCCATCCCAGGGCGATTAGCGTGACTGATGAGGCTTCTTTCTTGCATG
ATGCGGGATCAGGAAATTTTCGCAATCGTGACGAAACCAAAAATTAGAAG
AGATGGTCTCGTGATaatctgtaccagagtgtatctcacgattatcgtag
cctagtgcaatgaattttgaaattagccgtagatatcgggtttgtgtaca
gactagTCTCGTGAGGGGTCCTACTCCATTTAGTATTCATAAGAGGGATG
GACTAACCTTTTCAAGCCACATGTAATTACCCCctgaatttttttctgga
aatttttcttgCATGAAAGGGAATGGCCCcagtaaaaaagtttaaaggTT
TGATAGATACCTTTTGTTAGATTGGGCTTGTAGCTACAATCAGCACCGAA
AAatattgaccatttttggtattttaacgtttttcagaatttaaaggtca
AAGCGAGAATTGCAGGTTCAGTATTTCCACTTTGCTTCATCggaattttt
caatttaggaGTGGCTTCCAGACTATATTCTctgccttattggaacattt
ttgagcttttagaacCTGAAATCCTAAGGTCCAAACTCTTAAGTCTAATT
TCAATACTCAGaattaaaactctacttccgaactgtacttcaaagcactt
aaaaatcacttgcggttttaaagttttaagagaattccccttttttgcca
aatatttcggcgccgattgtagCAAAATTCTTAAAGCTCTGATAAAATTA
TGAACTCAATTAAGGGACTGGAGTTAAGTGCTACATGTTACTTCGTAAGA
AAAGATTCAATAGATTTTTAAAAGTCGAATAATTGAAAGATGTATTATAA
TATAACTGTTGATCTATATGATATAAAATTTCGTGGAATAATATTTTCCT
ATAATATAAATGAATTAcctttaaaacataaaaattgaaaattaaagaaa
agttACCCCCGCATTAAAATTTTTACCGAGTCTAAATAGCAGAATaatgg
aaaattaaaaattagttGCCATTTTTAAAATTATCATACATTGGCTAAAC
AATATAGTATtggttttaaaaatattatcttGGATAAAACATAAAATGGC
TTTATCTATATCTAAAGCATATATATAGCTTCACGTGCTAAGGTCTTCAA
AaattggcactttgagcctcgaATTTTACTCAGCATTCTCTTATATTAAG
GGTGATTTGAGGTAGTCTTAACTCATTCTACTAAGTTTAGATTTTCTTAA
GAATCAATCATTCAAGGCTCAGGATTgtcctcaaattgttcttatttctt
gGCGCTTTTGAGCCTCGTTCGTGTTCTTAAAAACTATTCTTCTCGCTTAT
TCTTGTCAAACAGAAGTATTTTACCATCTTTTTCATGtaccttgaaaaaa
aatctctttgatcGATAATTAATGAGATAGTAGAAACTTCCCTGTGAAAA
ATATTACTGATGACAAGTATGACATAATGCTAATAAACACATTTAAAAAC
ATGTGCTGATAAGAGATTTGATAGATCTGTTAACAACAAGCTGACATCTA
TTCGTACATACTAATTATCAGTAATTTGGCAAACATGTTAGAATGAAAAG
ATTTCTAGTAAATTTTGAAGATTAGATCTATCCCTAGATTTTAAACCTTT
AAAATGAAAACTATGTAAAACTACGAAATTAAAACGTAAAATTAATATGA
CTAAAGGCAAATCTCAGGCCAAGTATTGCTTTAACGACCACTTCATTCTA
ACCTGAAGTCCACCATTCGCTATTTAATGCGTGCAATCTTTTTTTCTACC
ATTATGGAAACCGCTTGAAAGGAATCAGCCTTTACGCTAACATGGTTTTT
GTATGGTCGcgaaaaagagtgcacactaaAGCGAATTGACTTCAgaacat
aacgttgtttcaacattcatttAACGTTTTAATGGACGTTAGATATTATG
CTGTTTTGACATTTTGTGTCAGTCCGTTTGGTTTAGGCTTATTttgagta
catgttttttttttataagcattgcacttataagcatatctaggctcaga
tatgggaaaaaattaagcatatggcaagcattacttgagcctacgaaaaa
tgtttttttcctgattttagctttttttggctcgaattttacggattttc
agtatttccttaaatttaaggtttagatttaagcatcccctcaagcattt
ttcagcctttttaAGCTTTCGACCTGAGCATTTCGGagcctgttttcaaa
tttttgtatgcttataaataaaaaaacaagtatttaAATTCTAATTTCTA
AATTTGTTCTAAAGAAAAGAGTTAATGCTAAGATTTTAAGATTGCTAATA
ATTTACGTGTTGACAGAAAAAACAGTTTTTACAGACTTTGAAAGTCAAGA
AATGTCaaacaaaaatcacaaattttaacTACTACATAGCACATTGACCA
TTTTGACAGCATTTTATTCAATTGCTACAATTCCTTCTCTTTCCAAATAA
TTGACCCCACATTATAATGTAAGGGTCTACACCTTCAAACCTAGTGTTAA
ttaaaagtctaaaaaatagtattaaaaagataaattagtTCTTTGATATT
ATATTCCATGAATCTAACTGTTAGCAAATACAGTGATAtctcaaaaaaag
atattccaaTTTTGTAGTAATCTTGCCTTTTGAATCTTACATCATCTAAT
AATCAAGACTTTTCTCTAGATCTAAATTATTTGGAAAGCCACACATACCA
ACATTTCTACAAATTATTAAATTCATCCAATTTTGATCTCCAATCAGAAT
TCTGTTTGACTTCTTTACGTTTCGGTGTTTTCATAAACATCTTTTTAAAA
GAGTCCTTCTTAGATTCTTTATTAGAATCCTTTTCAACAACTTTTGTATC
GATTGGTGGTTGCTTTTTGCTCTTTCCTTCAAGAACACTAAATTGTTGCT
CAATCGGAACAACAGGCTCTGCAGATTCTCGTTCTGGTTGAGGAGAATCT
AGCATTGTTGNACAACAGGCTCTGCAGATTCTTGTTCTGGTTGAGGAGAA
TCTGGCATTGTTGATTCATCTTGCGGTGCTTCTATCACAGATCCCTTTTC
TGCCGGAGACTCTATCACAGATCTCTTTTCTGGTGGAGGTGATTCTAGAA
TTGCATAATCTGGATCTTCTGGTTGTGATATATTTTCATCTAGTTGTGAT
ATATTTTCATCTGGTTGTGATATGTTTTCATCAGGTTGTGATATGTTTTC
ATCAGGTTGGGATTCTTCAGGTTGGGATTCTTCAGGTGGTGGATCTTGAT
TAGTAGGCTCTTCTGGTTCTGGTGAGATTGATGTATGTGAATTTAGAGGT
GGAGATTCAATGTCTCCTGGGACAGATGAAATTTTCTCTGACTCAGGTGT
GTCTCCAGGGGCCTCATTTTCTGGCTCTTCACCATTTGATGGTAACGAAT
CTGAATCTTGTAATtcaacattttcatcttcaacaCTCAATTGCGTATTA
CCATCATCATCAGCATCATCAGTAacattttgttgttgttcaGCTTGGAG
TCTCAACTCCTGTAATTTCTCAGCTTCTTCTATTGTAATTTCATGAACAG
TAGTATAAGTGGCAAGGGCAGATGTAACAGGTCTGTTAATCTTTTTCAAA
TAGTTATCAGTGATTTTATCCACTACCAAAAGAATAGCTTTTTTAGGATC
AGTGCGGATTTGTTGGACCACTTCTCCATGAGACATTGCTTCAACATTGA
CTTCATTGACTTCGACAACGCGATCACCAACACATAATCCAGACTTCTCA
GCTGCGCTTCCTGAAAATTAGAGGCAAGATATTACACCCTTGTGTGGCTT
CTAGCACTACATTTATCATATCACAGAATTCTGCATATAAAATTAAAATA
GTGAGTTTCTGCCAAAAACGCAAAAGCCGTAGCGCCAAAATTAGGGCTAG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029298XLOC_029298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045835-exon-scaffold_102-1491911889:232213..235427TCONS_00045835-exon-scaffold_102-1491911889:232213..235427Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1510915933:232213..235427TCONS_00045835-exon-scaffold_102-1510915933:232213..235427Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1575043694:232213..235427TCONS_00045835-exon-scaffold_102-1575043694:232213..235427Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1491911889:235481..235654TCONS_00045835-exon-scaffold_102-1491911889:235481..235654Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1510915933:235481..235654TCONS_00045835-exon-scaffold_102-1510915933:235481..235654Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1575043694:235481..235654TCONS_00045835-exon-scaffold_102-1575043694:235481..235654Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1491911889:235697..236413TCONS_00045835-exon-scaffold_102-1491911889:235697..236413Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1510915933:235697..236413TCONS_00045835-exon-scaffold_102-1510915933:235697..236413Clytia hemisphaericaexon
TCONS_00045835-exon-scaffold_102-1575043694:235697..236413TCONS_00045835-exon-scaffold_102-1575043694:235697..236413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:232213..236413 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.23154e-10	1.34947e-09	3.65164e-08	0.00804266	8.91617e-08	1.25699e-06	5.77447e-07	0.404739	0	0.344629	0	6.94872e-07	0	0	7.19988e-10	0	0	0	0	0	1.52069	0.857709	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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