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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045852 ID=TCONS_00045852|Name=TCONS_00045852|organism=Clytia hemisphaerica|type=transcript|length=1913bp
CGAGTGTGTTacaattttccggtctgtagtttgtatgacctgcgtcctgt
gtcctgtctcctgcgtccTGTCTCCTGCCTTTCGAACCAACCGAACCACA
CTTGCTTTAATTTTCACACGCACCTACCACCTACAGAGACGATCAATTGA
TAATCGTTCTCCCACGTTTTATTTACTTTCATTTCTATTATATTTTTAAT
ATCATCTTTCATTACTTCGTTTGTACATTCAATGCGATATTTTTAAATGC
TTTCATCAGCACGTCTATTGCGAAAGAGAGGACTGTCCACCTCTAGTCGA
TTGGAAGCTGTCATGTCGACTTTTTACGAACTTTCGGCTGAAAAGCTAGA
TGGAAAAACCGTTcaactttcaaaatataaagGCAAAGTTGTTCTGGTAT
TGAATACAGCAACACTATGAGGAACAACTGTCAGGGATTTCACTCAGATG
AACGAATTGATGGACAAATATGCATCAAAAGGTTTATCAATCCTTGCTTT
CCCATGTAACCAATTTGGTCACCAAGAGAACTGCACAAATAGTGAAATTC
TTTCCACATTGAAATATGTCCGTCCTGGAAACGGGTATGTACCAAAATTT
GACATGTTTGCCAAAGTTGAAGTTAACGGTTCAAACACTCATCCAGTTTT
TAAATTCTTGAAACAACATTTACCATTACCACATGACGATCAGGTTAGTT
TGATGGGGAATAACGCGTACATCATATGGAATCCAGTTGAACGGTCTGAT
ATTGcttggaattttgaaaaatttcttgttgGCAAAAATGGATTACCAAT
TAAAAGGTatagtaaaaaatttgaaaccatGAATATTGCAGATGATATTG
AGGCTGCACTTAAGGCCGCTTAAGTTAAAGTAGAATTATTATGGGATGCA
TTGGTGAGACAAGTAGTTTATGGGCGGAGTAACCGTTAAATATGATTTTT
TTTAGATAGAAAAGATGACTTTTGGTTTATTATTGCTGTTGTTGACTAAC
TGTTTGGAAATAGAAACTTAAAATATTAAATCAATTGTCAACCAACGCTA
CTTTTTTTACATTTTTAAATTAAGTCTTTCTCATAAAATTACAAATTAGT
TTAGCCTACAATCATGGTCGAAATATATTGAGAATTCCGGTCATGTTAAC
GTTTTTCAAGATTTTAAGCTCCGGTAAGAAAGTTGATTTTGGGCTATCTC
TTTAATTTAATCGAATATTTCAATTTGGGATGGGTTGACTTCCAGGCTAT
ATTTTGAGCCTTATTGGACTATTTTTGAACTTTTGAATCCTTCGACTCCG
ATTCTAGCGTTAAAACTCTACCCTTCGAACCTATTTTAGAGCACTTACAT
ATCGATTGTGGTTTCAAAACTTCCTGGGGAATTTCCCTTTTTTCTCAAAT
ATTATGACCTTGATTGATTGTACCATTAAAAAGGTAACTGATTGTATTTA
TTTTGGTAGGTCTATATGGAAATTATGATTGTATTTTTTTTATCTGCACA
TATTATTTTTCTAGTCGTAGTTTACTTTAACTCATAGCTTGCACACTTTA
GAATACTGTTTTTTTCCTTGATACCCAGATAATATTTATACGCAATTTTA
TGATTTTAACTTGGTAAATTGTATATTTTTTTAATACAAGTCAATTTAAA
GGATGTAATTTATGATTAGCGGATTTATATAACTTGGTTACCAGGGTAAA
ACTTGCAGTAGAATAAAGAATCAATTTTTTGAATATCTTTTTTTACTTCC
ATGAGTATTTTAACACCAGGGGGGTTGaagcagttactacaagacatcat
gccggttagtaccgtggtggtgtgccatatgaattggataaagtcactta
gtactcagatgtactaactgcaaaaaagggtggtcccctgctaaaaaatt
gccaaattttggt Run BLAST on NCBI transcript from alignment at scaffold_102:434988..442086+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045852 ID=TCONS_00045852|Name=TCONS_00045852|organism=Clytia hemisphaerica|type=transcript|length=7099bp|location=Sequence derived from alignment at scaffold_102:434988..442086+ (Clytia hemisphaerica)
CGAGTGTGTTacaattttccggtctgtagtttgtatgacctgcgtcctgt
gtcctgtctcctgcgtccTGTCTCCTGCCTTTCGAACCAACCGAACCACA
CTTGCTTTAATTTTCACACGCACCTACCACCTACAGAGACGATCAATTGA
TAATCGTTCTCCCACGTTTTATTTACTTTCATTTCTATTATATTTTTAAT
ATCATCTTTCATTACTTCGTTTGTACATTCAATGCGATATTTTTAAATGC
TTTCATCAGCACGTCTATTGCGAAAGAGAGGACTGTCCACCTCTAGTCGA
TTGGAAGCTGTCATGTCGACTTTTTACGAACTTTCGGCTGAAAAGCTAGA
TGGAAAAACCGTTcaactttcaaaatataaagGCAAAGTTGTTCTGGTAT
TGAATACAGCAACACTATGAGGAACAACTGTCAGGGATTTCACTCAGGTA
TCTATCTAATTTATTCTCAAAATttacttcagttgagctagattTGTGTG
TGTGGGTGTCTGTCCTGTTGTGCACATGTGTGCCTGTTCTGTCattaaaa
ctttagggcagcctggagacttcaaagtTGGTCTTACTGGGCTGAAATTT
AGCACACTTGTtctttgggtgaatatctggagttttttttcattttttaa
aaaactttgattTCTGGGGCCTCTaggagccccccccccaagcgGACCCA
AAATTCCCGCCAtcgtgccaattttttttcgatttcacgacatcacgcct
gaaaaatttgattatcACAATCACgctaattttttccaattttatgccat
tacgcctagaaaatttagttttcacgctcatattttATTCTCTGGATAAA
TTCAGTTTTAAACCACGTTTAGACCCATTGTATGAATAAAATACTGttat
ataaacttaatttttgtcCACAAATAGGTGTGTGTTTggtcgtcaatcag
tttttaggcattctcaTATGTGTAAGTGAAGATATATCGTGTTTCTGATA
GGAAAAATAACGTAATTTTGACTTGTGCATAACGAAAAATGTTTGACAAC
TGGTGGGTCACATCAAAGGGAttgagggctgaggtatatttgagtaaatc
gacaaggcccaccatggttgaacaacggagaaaatttttgaattttgaag
ggttcaaagtgctattttaggacccattccaattcaaattgaaaaataat
tcatgtaaaaataatggaaattttttaaaaatacaagtagctttttttgt
aaaaacgtgaggggccatgccccctggtccatgggcattaattgtgaatt
agcgtgaatagttttcaaaagggaaCAAGGAGAggcgacgggagaaattt
tcaattccataagggtaaaattgccctcatttactctcttttttttctcc
aaaatatGGTTTGATCAATGCCAATCTGCtcaaaattacacctcataata
aacctgttgctttctttctgtttaaggctttgctacaaatatatattttc
ctgaaataaaggacctgatgtctttgatgcatctaaaaataagcatctaa
gaaagagaggaaaatgttaGTTACAGAGGAagcacaaccatggtttgcgc
cgacgggagaaattttccattttttgaccCTCTCAtagagatattaaccc
ttaaaaacagtgtttttcagccagaacaGGCCAGAAACAgttgttttgtc
cagtttttgcacttttggaagctcaatatcccgagttaggtacagaaatc
acctatacttgcaatatatctctaactctaatcttaattttttgagagct
ttccaaaaatatacaacaggtctccgttttctcaagctaaaattttcatN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTACTACAAAGCTTTACCCTCAAAAATGGTTTCGAAATaaaggaaaaa
ctttaattgcaattttctcaaaatgactaTTATTGGAACTGATTTTCGCA
GAAACTAATATTCGcggttgaaaaaaaatcagaaaattgtatttcgcggc
tTCAAAGTTTTgcggttttgccaaaaaaagcctgaaaaacgCTGAAATGA
ACTCCCGtgcaaaattagttccaataaggttaTAAGGAAGTgaatgcccc
ttggtcaggctcgtgtgtgcttaagttctcaaagcatccagacatagctt
atgcttattatatgcttatgaatcatgcttgtGATTAACCCTGAGCCAAA
TTTTTAGTGAAATGTCAGAAATAATGTAAACATtttggaatgtctttttt
ttacttgacctctaccaaacctttttaaacagataaaaaatgacaactgg
aaaaatatttaaggctgacatatatgcccATGCTATGCTTagaaattctg
caaatctgagtttttgtatgcttataagcgaTATGCTCATAAAAAATATG
TAGATCCATTTTGAATTAAGGCTCACAGGACTTAGatcccttttgaatta
aggataACTTGGATCATGCGCTTGGATAATTTGAGTTTTAATATTCAATT
CATCATCAAAAGCCTATTTTTCAATGACTTTGGGCAACaggtgaaaagtt
tttaacactTACAAGGGGGTTTAAGGTTGGGGGAGGAGGGGAATTAACCC
TTTTTTCTCAACGAAAATTTCAACAGAATTTTGGAAATAGGGTCCTCTGT
TGGCGACAAAAAACAGGGTTTGACAGATATCGGGGAAAAACAGGTGGAAT
CACGGAAACATATCCCCCCTGAAGCCCCCCTTTACCACTGCTAGCAAAAG
CAAATACATAATAGCTATTTCGATAGAATGAAAGGGCATCTTACAGATTT
ATCTAGCCTATTGGTATGAATTGTGCTCATAATTTAGATTTTGGTGCACT
TTCAACTCATCCAGTCTATAATAaataaaacaagacgacttttagtggaa
aataattttgaaaataagagACCAATTTGATCAACAGTTTTATGGACCCA
ACCAAAcctgaaattccaaaagtcctaataacaataaaataaaaattcta
cttttattttttttttgcctactGACCGACCCTTTTTTATGGGTAGCTTG
GCccttaaaacaacaaattaaattggcctcgcctacATATGATGACGTAA
AACTGAAACCATCAtgtgaaaatgagaaaaataatgaACTTGGGCATTTT
GACTATAAAATCTATATATATTCTaatcaagataaaaagaaattgaatca
CATCTCTTTTTTTAACCGTATGAAGAAGATCTGCGTGTTCAATTttggaa
gccttcggatgttcttaacatgttcttaattttgtgTTCTgggttcttaa
tttcaccattttatgagtattttggTGCATTTTCCTCataaattgggtgt
tttagagtttatAAAGCCTTACATTTTTCTCAACTTGCTCTTAAGATTTT
Ggctatcaaagccttatgttcttatataatttgttcttataaaaaaaagt
attaGAGCGTAGGATATAGCAATCAACCaatttaattttattgtttttta
cgctcactacagtatgtggcccccaaaacgtcaatcaaacttaaaatttc
tctcaaatctagaggaaaagaggttttacaaagatttttgctgcatgaaa
aactttaacatctctactttatttcccggaagttctttttcaaaattttc
aatttcaacaatatttttcaatcgcttaaagataggtagctgttttctaa
tggcccccaaaacaaaggtttgcaatttttgcaatttctcgagatatctt
taagatatgaagacaaaattttgaccatagtttggaaatgtgatttagag
ggttttggacataaatttgtttgataaaacgtaggtgtagttaaaatcaa
attattaagctcagtggtaatagggggaaatatatgaacatatttgtgtt
tacccttaaatttacgacccgatggattcaaaatttatgatttttatgaa
atatttcaagattttcgatattgcaaagtccaaactgaaaatttagaaat
tttcaaaatgacaattttgatttaacaacgtcttaatcaagtttctaaaa
actaatctcttttgaaattagttccattcatgtatggaataagctgtgaa
aattttagaaaaaaatgttaagctttaaaggtatttttctcctatatttt
gcaaaaaaatgacagaatttgctgtttttgctgattcagcgaaaatcttt
ataatataatgttaattttttgttataaaatatTAACTCGAGCTGATAGG
GAtagaatttcaagattttttgctgtttctcatatttagaaatTTCGGTT
TAATCAATGCTGATTTTAGGGTCCCAAAATAAAGGTTGatctttaagatg
ctatatcttttacccatcctctaaagtaACAGATGTATTTGCCTTtcctg
aacggcattaggtgtagaaagtttcctatacctcATTTTCATTacttatt
ttcactatccaaggagctagagtgagttatatgcaatttttatctaattt
tggtgttaaaatatttccttcagacgcaaatatgttattttgaatctgtc
tcaaaccatcaagaacatactcatttttaagtataactatcattctctca
aaataaacaaaaatcgtttaattcggataaatctacaagtcagaatcctc
attttaatgacgacctccgttttgggggccgtctccgttttgggggccgt
ctccgttttgggggccgtctccgttttgggggccatatactgtaggaTAC
AAGTTTTCTCCCCGGTATTAATGTGACACGATACCATAACAGCTGTTTAG
CTGCGCCGTATTGTTTGGCTGCCAATCTTACTAGCAATAAATTTACCATT
GTAACTTTAAACACTCCTTGACGGATAAAATAAGATTATTGCAAAATAGG
ATTAAGACTGACAGTATCTTTACTTGAGTTTATTTTGTATATTTCAGATG
AACGAATTGATGGACAAATATGCATCAAAAGGTTTATCAANaattctgat
aaatctacaagtcagaatcctcattttaatgacgacctccgttttggggg
ccgtctccgttttgggggccatatactgtaggaTACAAGTTTCTTCCTCG
GTATTAATGTGACACGATACCATAACAGCTGTTTAGCTGCGCCGTATTGT
TTGGCTGCCAATCTTACTAGCAATAAATTTACCATTGTAACTTTAAACAC
TCTTTGACGGATAAGATAAGATTATTGCAAAATAAGATTAAGACTGACAG
TATCTTTACTTGAGTTTATTTTGTATATTTCAGATGAACGAATTGATGGA
CAAATATGCATCAAAAGGTTTATCAATCCTTGCTTTCCCATGTAACCAAT
TTGGTCACCAAGAGAACTGCACAAATAGTGAAATTCTTTCCACATTGAAA
TATGTCCGTCCTGGAAACGGGTATGTACCAAAATTTGACATGTTTGCCAA
AGTTGAAGTTAACGGTTCAAACACTCATCCAGTTTTTAAATTCTTGAAAC
AACATTTACCATTACCACATGACGATCAGGTTAGTTTGATGGGGAATAAC
GCGTACATCATATGGAATCCAGTTGAACGGTCTGATATTGcttggaattt
tgaaaaatttcttgttgGCAAAAATGGATTACCAATTAAAAGGTatagta
aaaaatttgaaaccatGAATATTGCAGATGATATTGAGGCTGCACTTAAG
GCCGCTTAAGTTAAAGTAGAATTATTATGGGATGCATTGGTGAGACAAGT
AGTTTATGGGCGGAGTAACCGTTAAATATGATTTTTTTTAGATAGAAAAG
ATGACTTTTGGTTTATTATTGCTGTTGTTGACTAACTGTTTGGAAATAGA
AACTTAAAATATTAAATCAATTGTCAACCAACGCTACTTTTTTTACATTT
TTAAATTAAGTCTTTCTCATAAAATTACAAATTAGTTTAGCCTACAATCA
TGGTCGAAATATATTGAGAATTCCGGTCATGTTAACGTTTTTCAAGATTT
TAAGCTCCGGTAAGAAAGTTGATTTTGGGCTATCTCTTTAATTTAATCGA
ATATTTCAATTTGGGATGGGTTGACTTCCAGGCTATATTTTGAGCCTTAT
TGGACTATTTTTGAACTTTTGAATCCTTCGACTCCGATTCTAGCGTTAAA
ACTCTACCCTTCGAACCTATTTTAGAGCACTTACATATCGATTGTGGTTT
CAAAACTTCCTGGGGAATTTCCCTTTTTTCTCAAATATTATGACCTTGAT
TGATTGTACCATTAAAAAGGTAACTGATTGTATTTATTTTGGTAGGTCTA
TATGGAAATTATGATTGTATTTTTTTTATCTGCACATATTATTTTTCTAG
TCGTAGTTTACTTTAACTCATAGCTTGCACACTTTAGAATACTGTTTTTT
TCCTTGATACCCAGATAATATTTATACGCAATTTTATGATTTTAACTTGG
TAAATTGTATATTTTTTTAATACAAGTCAATTTAAAGGATGTAATTTATG
ATTAGCGGATTTATATAACTTGGTTACCAGGGTAAAACTTGCAGTAGAAT
AAAGAATCAATTTTTTGAATATCTTTTTTTACTTCCATGAGTATTTTAAC
ACCAGGGGGGTTGaagcagttactacaagacatcatgccggttagtaccg
tggtggtgtgccatatgaattggataaagtcacttagtactcagatgtac
taactgcaaaaaagggtggtcccctgctaaaaaattgccaaattttggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045852-exon-scaffold_102-1491911889:434988..435434 | TCONS_00045852-exon-scaffold_102-1491911889:434988..435434 | Clytia hemisphaerica | exon |
| TCONS_00045852-exon-scaffold_102-1510915933:434988..435434 | TCONS_00045852-exon-scaffold_102-1510915933:434988..435434 | Clytia hemisphaerica | exon |
| TCONS_00045852-exon-scaffold_102-1575043694:434988..435434 | TCONS_00045852-exon-scaffold_102-1575043694:434988..435434 | Clytia hemisphaerica | exon |
| TCONS_00045852-exon-scaffold_102-1491911889:440621..442086 | TCONS_00045852-exon-scaffold_102-1491911889:440621..442086 | Clytia hemisphaerica | exon |
| TCONS_00045852-exon-scaffold_102-1510915933:440621..442086 | TCONS_00045852-exon-scaffold_102-1510915933:440621..442086 | Clytia hemisphaerica | exon |
| TCONS_00045852-exon-scaffold_102-1575043694:440621..442086 | TCONS_00045852-exon-scaffold_102-1575043694:440621..442086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:434988..442086 + |
Blast
BLAST of TCONS_00045852 vs. Swiss-Prot (Human)
Match: GPX2 (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3) HSP 1 Score: 228.024 bits (580), Expect = 6.567e-70 Identity = 103/180 (57.22%), Postives = 130/180 (72.22%), Query Frame = 1
Query: 310 VMSTFYELSAEKLDGKTVQLSKYKGKVVLVLNTATL*GTTVRDFTQMNELMDKYASKGLSILAFPCNQFGHQENCTNSEILSTLKYVRPGNGYVPKFDMFAKVEVNGSNTHPVFKFLKQHLPLPHDDQVSLMGNNAYIIWNPVERSDIAWNFEKFLVGKNGLPIKRYSKKFETMNIADDI 849
+ +FY+LSA LDG+ V + ++G+ VL+ N A+L GTT RDFTQ+NEL ++ + L +L FPCNQFGHQENC N EIL++LKYVRPG GY P F + K EVNG N HPVF +LK LP P+DD SLM + IIW+PV RSD+AWNFEKFL+G G P +RYS+ F T+NI DI
Sbjct: 4 IAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182
The following BLAST results are available for this feature:
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