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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045855 ID=TCONS_00045855|Name=TCONS_00045855|organism=Clytia hemisphaerica|type=transcript|length=4076bpRun BLAST on NCBI protein sequence of TCONS_00045855-protein >TCONS_00045855-protein ID=TCONS_00045855-protein|Name=TCONS_00045855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp MKRASDAKKQQMINGMASMLLGGIDIKKPEPPQDDQGEQQKPIPINKLGRRun BLAST on NCBI transcript from alignment at scaffold_102:449526..470863+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045855 ID=TCONS_00045855|Name=TCONS_00045855|organism=Clytia hemisphaerica|type=transcript|length=21338bp|location=Sequence derived from alignment at scaffold_102:449526..470863+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:449526..470863+ >TCONS_00045855 ID=TCONS_00045855|Name=TCONS_00045855|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_102:449526..470863+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045855 vs. Swiss-Prot (Human)
Match: SIR6 (NAD-dependent protein deacetylase sirtuin-6 OS=Homo sapiens GN=SIRT6 PE=1 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 9.362e-54 Identity = 114/270 (42.22%), Postives = 157/270 (58.15%), Query Frame = 2
Query: 2783 EYFDDPETLSQKLDTLATWVKESKHCIFFTGAGISTSAGIPDFRSGMKTVLPTGP-GAWELRDAGKARDKKSAVKKLLQAIPTYTHLAIVKLEEEGKVSYVVSQNVDGLHLRSGLNPKALSELHGNTNLEKCSRCKKKYLRDYRTRSAKRVHDHKTGRLCADPK------CRAPLLDSIINFGEDLPMRDLNRACEHAEKADLCISLGSSLTVSPANEIPEIVSERKQKLVIGNLQNTPLHSRCDLAIYAMCDDVMRGLIERLGLEVDQW 3571
E FD PE L +K+ LA V +S +F TGAGIST++GIPDFR GP G W + + G A + + A PT TH+A+V+LE G + ++VSQNVDGLH+RSG L+ELHGN +E+C++CK +Y+RD + + TGRLC K CR L D+I+++ + LP RDL A E + ADL I+LG+SL + P+ +P R +LVI NLQ T DL I+ D+VM L++ LGLE+ W
Sbjct: 22 EIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFR---------GPHGVWTMEERGLAPKFDTTFE---SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGT---MGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAW 276 The following BLAST results are available for this feature:
BLAST of TCONS_00045855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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