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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045856 ID=TCONS_00045856|Name=TCONS_00045856|organism=Clytia hemisphaerica|type=transcript|length=1161bp
GGCGTTACTAAATTGTTTATTGTGATTGTTATCAAGCATGGCCAAGAAAA
CTCAAGCTGGACAAACTGAATGTACCAAATCTTATTGAAAAGCAGAaata
tcgttttttttttctatttgagaAAGTCTCACGTTGTGTTTATTAGTGTG
GGTGTAGACTCGCAAGATAAATTCAACTTAGAAATTCTTGATTTCCAATT
GAAGTGATCGAAGTGCAACTTGGAACCCTACAACCTACAACCTGGTAAAG
GATGTTGATGTTCAAAGTAACTTGCATTGTTGTCATCCTCGTGATTGTCC
AATCAGCTGCTTTCAATGACGAAAAAGAGTCTGAGAACAAGCGCATGCGC
AGAGATGCTGGTTTAACAGCCGCCCTGATTGGTGCCGGCATTTCCGCTGG
AGCTTCATTGGTTGGAACAACTGTTGGAGCACTTAAAAGAAGTGATTATT
CCGTGGCTGTTTCAGGATCCATTACTAACTTTGCCAAATGGAATATGGGT
CTTAAACAGTGTGTTGTAGAAAGTGGTTATATGAACATTCCAATGCGAAG
TGTTTCATCAGGAAAACGTGAAGGATTTGCTGGCCACAAAGAAGGTAACA
CTGCCACCGGAAACTGGGTTCAATGCACTTACAAAATATTGAATAGTAAC
GTCATAATACATTTGATGTATTCTGCTCCTTTTTCGTTCGATTTTCATTA
CAACCAGATTGCGGTGGCAATTTGTCATTCGTCAGACTCGCGATGTACAA
ATATGAAGATTGGACAGATGACAAATGATGCCCGACCCTATTTAGCCCGA
ATGGATTACTATAACACTATTCGTATGTTAAAGCTTTGTAAGGAAGGATT
CTGTGTGACCGGTGTTATGGGAACATCACATCATTCTGAAATTACATGGA
AAGTATATCCCATTATTTATGACAATTTATCAAATGCAGTTCAATCTTCA
GCAGCGAAAACACGATGGGATAAAGCTGATTATGACCACTTTGTTGTTAA
AGAACTGATGTAAACATTACaatttgtaaacattttttggGTCATGTTAT
GGAAAATAAAAACCGGTGGAAGAATGTAATTTACAGATTTTcttatgaaa
ttttctttaaaactcTGACGATCAATCCCAAATATTGAGAAAAGTTTTCA
ACAAGTAAAAG Run BLAST on NCBI protein sequence of TCONS_00045856-protein >TCONS_00045856-protein ID=TCONS_00045856-protein|Name=TCONS_00045856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MLMFKVTCIVVILVIVQSAAFNDEKESENKRMRRDAGLTAALIGAGISAG
ASLVGTTVGALKRSDYSVAVSGSITNFAKWNMGLKQCVVESGYMNIPMRS
VSSGKREGFAGHKEGNTATGNWVQCTYKILNSNVIIHLMYSAPFSFDFHY
NQIAVAICHSSDSRCTNMKIGQMTNDARPYLARMDYYNTIRMLKLCKEGF
CVTGVMGTSHHSEITWKVYPIIYDNLSNAVQSSAAKTRWDKADYDHFVVK
ELM Run BLAST on NCBI transcript from alignment at scaffold_102:477228..479935+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045856 ID=TCONS_00045856|Name=TCONS_00045856|organism=Clytia hemisphaerica|type=transcript|length=2708bp|location=Sequence derived from alignment at scaffold_102:477228..479935+ (Clytia hemisphaerica)
GGCGTTACTAAATTGTTTATTGTGATTGTTATCAAGCATGGCCAAGAAAA
CTCAAGCTGGACAAACTGAATGTACCAAATCTTATTGAAAAGCAGAaata
tcgttttttttttctatttgagaAAGTCTCACGTTGTGTTTATTAGTGTG
GGTGTAGACTCGCAAGATAAATTCAACTTAGAAATTCTTGATTTCCAATT
GAAGTGATCGAAGTGCAACTTGGAACCCTACAACCTACAACCTGGTAAAG
GTAAATTACCTTTTTCTTactagctggcacacaacgttgtttcaacgttt
atttaaagTTCACAGCATCCATCTAACGTTagatgtgccagctgggatct
tACTAGagaggtacacgtttttttataagaacaaactatataagaacata
aaggcttcgatggcctaaATATTAAGATCAAGTACTTTTTAagactttgc
agactctaaagcacccaatttcttaggaaaatgggcaaaaaaagtcacaa
aatggtgaaaataagaacatgttaagaatgtTTTTAAGCTTGAAAGGGAA
AATCTAAAAGAAACCAATTTTTGAAAGATAATTAATGAATGATGATTCGA
AACTTGACGGTTCAAAATTAATAAACTTTAGTAGCAAAATTTGTAGACTA
TTTCCATTAGAGATCGGGTTTATTGTAGTTTTCAATGCAATAAATAGTAT
CCCTTGTCATATTCCTGAAGAAACAAAATGTTGGGTCGATTTCCTCAGTT
TTGGGTGTTTCACTGGTTCGGTTTTGTGGGGAATTTTGATGCAAGAAACT
CTTTCTTTAAACCCTTTCTACTATAACTCAGTATTGTCCATTTCACCAGG
CAAGAAGAGAATAGTCTCTTATATGCAAAAAAACCTTATATCTGGGTATT
GTCTTTTTAATTTCGCCAGGATGTTGATGTTCAAAGTAACTTGCATTGTT
GTCATCCTCGTGATTGTCCAATCAGCTGCTTTCAATGACGAAAAAGAGTC
TGAGAACAAGCGCATGCGCAGAGATGCTGGTTTAACAGCCGCCCTGATTG
GTGCCGGCATTTCCGCTGGAGCTTCATTGGTTGGAACAACTGTTGGAGCA
CTTAAAAGAAGTGATTATTCCGTGGCTGTTTCAGGATCCATTACTAACTT
TGCCAAATGGAATATGGGTCTTAAACAGTGTGTTGTAAGTACAGTAGTAG
TCTATGTTACTCTATCTATGTAACTTAAATgtacaagttttatggtccct
tcagttaacgaTGGCTTacttaaaaactcaaaatttaagtcgAAAATATA
TCGCTTTCGAGatatagagactccactgtaataATTAACATCTGACTTGA
GATACAGATGCTAACACGACCATCTAACGTTCCAGCAGTGTTTAAATCAT
TTAAGGTGGTAGAAAGTGGAACCTCCAATTAGTGGACACCATCGGGTGAT
GcagttagtgtccgctaattagaagtgtccgcctctTAGAGTGACCATTA
ATGGGACGTTTTACTGTATACCGATCACTTTATTTCCCAATTACCAACAA
ACTGATAATCTTTTCGTTTAAATACCGTCaccggtaatttttttttattt
cccgGTAtgcaaatttagaaaacgaaggCTCACTTTAGCTTTCTtcttga
aaactgaaaaacgTAAAATTTATGGTTCATCTTTATGGTCGAAATATTTA
GATGATTTGTTCTTTTCCAAACAAAAACTATACAATTCTGGTACAGAAAC
AGGATAGCCATCTGTGTGTTTTGGGATGGCCTGGTAAGTCCTGGTAAGGA
ATATAGATGAAATAAATTTCatgtacagtagagtctctttaactcgaacc
tctataactcgcaTATTTCCTTAACTTGAAAAAATGTGTTCCTCGTGCTG
GTTTGAGTAATGGAGGCTCCACTGTAGGAGTTTTGAATTTAATANAGGTT
ACATCGTCccgttttttttcttgaacaatttttcgccaGCTCGATCCCCA
GCACGGCCTCGTGAAGCAACATAGGCTCCCTTCGGGAGCAATAATTCCCT
GTTTCCTGATAGGTAGAAAGTGGTTATATGAACATTCCAATGCGAAGTGT
TTCATCAGGAAAACGTGAAGGATTTGCTGGCCACAAAGAAGGTAACACTG
CCACCGGAAACTGGGTTCAATGCACTTACAAAATATTGAATAGTAACGTC
ATAATACATTTGATGTATTCTGCTCCTTTTTCGTTCGATTTTCATTACAA
CCAGATTGCGGTGGCAATTTGTCATTCGTCAGACTCGCGATGTACAAATA
TGAAGATTGGACAGATGACAAATGATGCCCGACCCTATTTAGCCCGAATG
GATTACTATAACACTATTCGTATGTTAAAGCTTTGTAAGGAAGGATTCTG
TGTGACCGGTGTTATGGGAACATCACATCATTCTGAAATTACATGGAAAG
TATATCCCATTATTTATGACAATTTATCAAATGCAGTTCAATCTTCAGCA
GCGAAAACACGATGGGATAAAGCTGATTATGACCACTTTGTTGTTAAAGA
ACTGATGTAAACATTACaatttgtaaacattttttggGTCATGTTATGGA
AAATAAAAACCGGTGGAAGAATGTAATTTACAGATTTTcttatgaaattt
tctttaaaactcTGACGATCAATCCCAAATATTGAGAAAAGTTTTCAACA
AGTAAAAG Coding sequence (CDS) from alignment at scaffold_102:477228..479935+ >TCONS_00045856 ID=TCONS_00045856|Name=TCONS_00045856|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_102:477228..479935+ (Clytia hemisphaerica)
ATGTTGATGTTCAAAGTAACTTGCATTGTTGTCATCCTCGTGATTGTCCA
ATCAGCTGCTTTCAATGACGAAAAAGAGTCTGAGAACAAGCGCATGCGCA
GAGATGCTGGTTTAACAGCCGCCCTGATTGGTGCCGGCATTTCCGCTGGA
GCTTCATTGGTTGGAACAACTGTTGGAGCACTTAAAAGAAGTGATTATTC
CGTGGCTGTTTCAGGATCCATTACTAACTTTGCCAAATGGAATATGGGTC
TTAAACAGTGTGTTGTAGAAAGTGGTTATATGAACATTCCAATGCGAAGT
GTTTCATCAGGAAAACGTGAAGGATTTGCTGGCCACAAAGAAGGTAACAC
TGCCACCGGAAACTGGGTTCAATGCACTTACAAAATATTGAATAGTAACG
TCATAATACATTTGATGTATTCTGCTCCTTTTTCGTTCGATTTTCATTAC
AACCAGATTGCGGTGGCAATTTGTCATTCGTCAGACTCGCGATGTACAAA
TATGAAGATTGGACAGATGACAAATGATGCCCGACCCTATTTAGCCCGAA
TGGATTACTATAACACTATTCGTATGTTAAAGCTTTGTAAGGAAGGATTC
TGTGTGACCGGTGTTATGGGAACATCACATCATTCTGAAATTACATGGAA
AGTATATCCCATTATTTATGACAATTTATCAAATGCAGTTCAATCTTCAG
CAGCGAAAACACGATGGGATAAAGCTGATTATGACCACTTTGTTGTTAAA
GAACTGATGTAAATGTTGATGTTCAAAGTAACTTGCATTGTTGTCATCCT
CGTGATTGTCCAATCAGCTGCTTTCAATGACGAAAAAGAGTCTGAGAACA
AGCGCATGCGCAGAGATGCTGGTTTAACAGCCGCCCTGATTGGTGCCGGC
ATTTCCGCTGGAGCTTCATTGGTTGGAACAACTGTTGGAGCACTTAAAAG
AAGTGATTATTCCGTGGCTGTTTCAGGATCCATTACTAACTTTGCCAAAT
GGAATATGGGTCTTAAACAGTGTGTTGTAGAAAGTGGTTATATGAACATT
CCAATGCGAAGTGTTTCATCAGGAAAACGTGAAGGATTTGCTGGCCACAA
AGAAGGTAACACTGCCACCGGAAACTGGGTTCAATGCACTTACAAAATAT
TGAATAGTAACGTCATAATACATTTGATGTATTCTGCTCCTTTTTCGTTC
GATTTTCATTACAACCAGATTGCGGTGGCAATTTGTCATTCGTCAGACTC
GCGATGTACAAATATGAAGATTGGACAGATGACAAATGATGCCCGACCCT
ATTTAGCCCGAATGGATTACTATAACACTATTCGTATGTTAAAGCTTTGT
AAGGAAGGATTCTGTGTGACCGGTGTTATGGGAACATCACATCATTCTGA
AATTACATGGAAAGTATATCCCATTATTTATGACAATTTATCAAATGCAG
TTCAATCTTCAGCAGCGAAAACACGATGGGATAAAGCTGATTATGACCAC
TTTGTTGTTAAAGAACTGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045856-exon-scaffold_102-1491911889:477228..477477 | TCONS_00045856-exon-scaffold_102-1491911889:477228..477477 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1510915933:477228..477477 | TCONS_00045856-exon-scaffold_102-1510915933:477228..477477 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1575043694:477228..477477 | TCONS_00045856-exon-scaffold_102-1575043694:477228..477477 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1491911889:478147..478411 | TCONS_00045856-exon-scaffold_102-1491911889:478147..478411 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1510915933:478147..478411 | TCONS_00045856-exon-scaffold_102-1510915933:478147..478411 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1575043694:478147..478411 | TCONS_00045856-exon-scaffold_102-1575043694:478147..478411 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1491911889:479290..479935 | TCONS_00045856-exon-scaffold_102-1491911889:479290..479935 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1510915933:479290..479935 | TCONS_00045856-exon-scaffold_102-1510915933:479290..479935 | Clytia hemisphaerica | exon |
| TCONS_00045856-exon-scaffold_102-1575043694:479290..479935 | TCONS_00045856-exon-scaffold_102-1575043694:479290..479935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:477228..479935 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR015926 | Cytolysin/lectin |
Blast
The following BLAST results are available for this feature:
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