TCONS_00045865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045865
Unique NameTCONS_00045865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045865 ID=TCONS_00045865|Name=TCONS_00045865|organism=Clytia hemisphaerica|type=transcript|length=918bp
ATTTTTCGAATTCTAGAGTTGATCGGTTTTTAAAAGAGTAAATCAAATTT
TGACTCGCCTCAACGAAGAAAACACGTACGTTGAAGGCGATATTCTAGAG
TTGCATTTGAAATTCGTCAGATTTCCGCcttaaaaatttgacgtcaaata
cacAATTGAACATTTTTCCtctatgaaaataaatttaaagaaaaaaatcg
aacaaaggCAAAACAAACACCGTGATGGATTCGAATGAAGAGGAAATTGG
AACTAAAGGCAATGAAGGTTTCTATAAATCATAAAGTGTTAATATGTTTG
GTATTTTTCAACTCTCCACTCGTGTTGAGTATAATTTATAACCACATGGT
GCAAGgaTGTGACAAATATAAGACATACGAGTACTGCGTTGGACAATCTG
CTTTCCTATCCCATGCAGAAAAACAGGATTATGCTTGGTTTAGAGTCAAC
GAAAAGGAAAAACCCGCACAACTAAAGAACACTGTTTTCGATCAAGATGG
ATACGAAATCAAAAATGATGAAAGGCATTCTATTGAAGGTGGTTCCCTGC
GTATTAAAGAACTTGTACCCACTGACCACGCATTATACTTCTATAAACGA
AAATTTACAACAATCCTCGAATGTCCAAATTATAGGCTAAACGTATATGG
TTTAAGAAGTGAATCCAACAGCTCGAGTATCAAGATTAAACAGGGAGACA
CTGCCGTTTTAGGATTTTATTCAAACATACCAGAGACATATAATCCTAAA
GATTCCAAGATATACAAAATGGACGGTAAAGTCATGTTTGACGGAAATAA
TGGCAACACAGGAAATTACAAACTTGAAAGTAAAGTCAAAAGAATACCCT
TTCAGTATATGACAAATGATTTTGAGAAATACAAATATTCTGTCTTGACT
TATACAGCTTTGACCATT
Run BLAST on NCBI

transcript from alignment at scaffold_102:539462..542041+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045865 ID=TCONS_00045865|Name=TCONS_00045865|organism=Clytia hemisphaerica|type=transcript|length=2580bp|location=Sequence derived from alignment at scaffold_102:539462..542041+ (Clytia hemisphaerica)
ATTTTTCGAATTCTAGAGTTGATCGGTTTTTAAAAGAGTAAATCAAATTT
TGACTCGCCTCAACGAAGAAAACACGTACGTTGAAGGCGATATTCTAGAG
TTGCATTTGAAATTCGTCAGATTTCCGCcttaaaaatttgacgtcaaata
cacAATTGAACATTTTTCCtctatgaaaataaatttaaagaaaaaaatcg
aacaaaggCAAAACAAACACCGTGATGGATTCGAATGAAGAGGAAATTGG
AACTAAAGGCAATGAAGGTTTCTATAAATCATAAAGTGTTAATATGTTTG
GTATTTTTCAACTCTCCACTCGTGTTGAGTATAATTTATAACCACATGGT
GCAAGGTAAATAGGATTTATTTATATCCCattctaactgaaaaattcgta
tgaggtaatctttgcatgtctcagccaatcagagTTTTACTCGGCATTTT
CTCGTGACTTTCTtatatgaatctgctaataagAAATTTGTGAATTCCTC
AAAAATTAGTCAATTCATTAaagatgttttttatttatttcaggaTGTGA
CAAATATAAGACATACGAGTACTGCGTTGGACAATCTGCTTTCCTATCCC
ATGCAGAAAAACAGGATTATGCTTGGTTTAGAGTCAACGAAAAGGAAAAA
CCCGCACAACTAAAGAACACTGTTTTCGATCAAGATGGATACGAAATCAA
AAATGATGAAAGGCATTCTATTGAAGGTGGTTCCCTGCGTATTAAAGAAC
TTGTACCCACTGACCACGCATTATACTTCTATAAACGAAAATTTACAACA
ATCCTCGAATGTCCAAATTATAGGCTAAACGTATATGGTAAGATATTTGC
ATTGTATTTTTCATAGAAGACGCCCCGCTTGCTTTCCCACGactgaaatg
ctgaatcagctaTTTGGGCAAACAAGTTTAGATCAACCAACCCAGCTTAA
ACATAACTTCAAAGGTCTTCTTAGCGGTCATATCGTCAATATAACGCCAT
AACGTTGTCTGCCATCAGCGGAGTTACTGATTAGCCTTGTCATGGTAAGG
AGAAACGCACTTAAAGGTTTtacttttacataagtgtttccgtttcatat
cagacacatgtttcatatcaggacaagTGTCTtgtattgttatattatgc
tgatataaacaaaaaatatttttcttttccttcttctGACTAATTTTGCT
CCACAatcgtgtcaattcaatgtgaaaaagcttgtaaattaaaattgatg
agtaagcaaacgatatcactcttatttaaaaacaaaacctttaaaatgac
CTAAGATCAAAATCAGCATTATATTTGGCAGGGAACTCTTGCTTTGGCGG
ACCTCTCAAAAAGCAAGGAAATATCTTCCTTTATTGTGGATTGACGCAAC
GCTAAAGGTTTTTACTCCTTTCTTGAATCAAACCAAATTTCTAAGCTAAT
AAACAGAGTGCAAGATTTGAGGTTAtaataactcctgaccacttgattta
aatgTGCACAACCGTAATTCTACTAATTGTCTACTTACCTTTTAAGCTTC
AAgcttttatttctaaatttgaaatttagaatttcaaaaagataatACGC
GCTGGAAAAGGTTAAATACTGTTAAATATTTGGTTTAAATCAGTCGATTC
CAGAAATTAAGAATAAAAACAACCATCTTCAGTGCTAGATgttaaaaatt
aattgaaattcgTTAGATATTGTCTTAACAATAATATaacatttaacaaa
atttaataaaactttTACTTTCACTTTTCAGGTTTAAGAAGTGAATCCAA
CAGCTCGAGTATCAAGATTAAACAGGGAGACACTGCCGTTTTAGGATTTT
ATTCAAACATACCAGAGACATATAATCCTAAAGATTCCAAGATATACAAA
ATGGACGGTAAAGTCATGTTTGACGGAAATAATGGCAACACAGGAAATTA
CAAACTTGAAAGTAAAGTCAAAAGAATACCCTTTCAGTATATGACAAATG
ATTTTGAGAAATACAAATATTCTGTCTTGACTTATACAGGTGAGttatat
tgggcttttccagaaaaaaaactgtaAACCCCCTGTTGAAGAGGTCCAAA
CTTTTGTTGCTAGAAATACTGTAACCCCTTAGAATTCTAGGAAATTTTAG
GTATAAAACCCCTCtcgaattctgaattttagtaggatttaaaaaaatta
aaaattccccatggaattcctgctaattttgacagatttttgtatatcCA
TATGGAATTCCGctacatatcaaaccttaccccctagGAACGGAAATGGA
TCTCTTCAACAGGGGGTATAtggtttttctggaaaagcccagtTTTAACC
TATATTTGaagcccgggggtactaggtttgagATGTCCGGGTATGTCCGA
GAGTCTGAAAATCgaaccttagagagactgaatttcgaaacaTTTGCCCT
TCCTTTCAAcgtttttgctaaaaaaattattgttggTATATCTTTAAAGT
ACATTCAAAATGTAATAATACTTAACCAATTGCTTGcacttttaatttct
ttatttcttgtaTCAAAAGCTTTGACCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029310XLOC_029310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045865-exon-scaffold_102-1491911889:539462..539816TCONS_00045865-exon-scaffold_102-1491911889:539462..539816Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1510915933:539462..539816TCONS_00045865-exon-scaffold_102-1510915933:539462..539816Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1575043694:539462..539816TCONS_00045865-exon-scaffold_102-1575043694:539462..539816Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1491911889:540005..540298TCONS_00045865-exon-scaffold_102-1491911889:540005..540298Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1510915933:540005..540298TCONS_00045865-exon-scaffold_102-1510915933:540005..540298Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1575043694:540005..540298TCONS_00045865-exon-scaffold_102-1575043694:540005..540298Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1491911889:541243..541500TCONS_00045865-exon-scaffold_102-1491911889:541243..541500Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1510915933:541243..541500TCONS_00045865-exon-scaffold_102-1510915933:541243..541500Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1575043694:541243..541500TCONS_00045865-exon-scaffold_102-1575043694:541243..541500Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1491911889:542031..542041TCONS_00045865-exon-scaffold_102-1491911889:542031..542041Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1510915933:542031..542041TCONS_00045865-exon-scaffold_102-1510915933:542031..542041Clytia hemisphaericaexon
TCONS_00045865-exon-scaffold_102-1575043694:542031..542041TCONS_00045865-exon-scaffold_102-1575043694:542031..542041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:539462..542041 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.053324	0	0	0	0	0	0	0	0	0	0	0	0	0.000411211	0	0.0483807	0	0	0.208645	0.160947	0.0475418	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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