TCONS_00045867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045867
Unique NameTCONS_00045867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045867 ID=TCONS_00045867|Name=TCONS_00045867|organism=Clytia hemisphaerica|type=transcript|length=696bp
CGTGAATTGAtaatatgcgagttgcgagttggtcctgcgagttgcgagtt
gctatcaaatatgcgagttgcgagttgcaagttgcgagttacgagttacg
NAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGCAATTAC
GTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATATGCGCCAA
ATGAAAATGTGGACTGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAG
CTTGAGCGGACCAACAACAAACACGGTTGAAGATCCGGCTCTGTACGATG
AACAAGACCATctcgttctgtaaaatacatgcACTTGAGGTTTTTAATAC
AAGGCCATCCATCTTGAATTCTTTTATTTCACACGCTATAagactttttt
cgaaaaatgacgACCATACGCTTCTTTTTGTAATCAgtcaaattgtaaat
tttttttgattttatttttaactgtaaattttttggtttaatttaTATAT
TGTAACATCAAGTTTTTGTTCATTGTGCACActataaaagataaaaaaat
atatcagcAAACAAGATTAAAACGTGTCAGTTCTCACCTGAACGAAGTCT
AAacataagcataaattaaggctgaaaatgagattttgttaAGCATACTc
ttgggtgcctaataaacgtacagaccaaaataaacgtacaggaggg
Run BLAST on NCBI

protein sequence of TCONS_00045867-protein

>TCONS_00045867-protein ID=TCONS_00045867-protein|Name=TCONS_00045867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MRVASWSCELRVAIKYASCELQVASYELXKYSQRIHEQEVLGKQLREKQK
YLRENHAPNMRQMKMWTDLTQLLKCKKESLSGPTTNTVEDPALYDEQDHL
VL
Run BLAST on NCBI

transcript from alignment at scaffold_102:544910..546383+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045867 ID=TCONS_00045867|Name=TCONS_00045867|organism=Clytia hemisphaerica|type=transcript|length=1474bp|location=Sequence derived from alignment at scaffold_102:544910..546383+ (Clytia hemisphaerica)
CGTGAATTGAtaatatgcgagttgcgagttggtcctgcgagttgcgagtt
gctatcaaatatgcgagttgcgagttgcaagttgcgagttacgagttacg
NAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGGTCAGTT
TGCTTCTCCTTCCTTCTTTCTTTCTCACTCTCCAAACTTTCGATCCTTAA
CTCAAAAGAGTAATTTTTGGCTGAGActcgactgttcttatttttaggaa
ttttcaggcgtaaatgttcttaacattttattcatttattgGTCTAAATT
CAATTTCCGTGGCCATTTTCGAGATTTCCTTTATACGAAATTGTTCATAT
TCAAAAAGCTTGTACACCTAACTTTAAATGGTATAAATGTTCTTTCCCTC
TTTTTACTCagctaaaaatgttgaaatggTTTTGGTGTATTTTGCTGTTA
TAAGACCAGCGACAGTGCTTATTCATTATTGTTTTGTTTCAGCAATTACG
TGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATATGCGCCAAA
TGAAAATGTGGACTGTAAGTGATATCTAATCTTTAGATTGATGTAAACTT
TATTTCATAAAGATCATGAATCTAACAAAACAAAGCACAAATCTAGCGAA
ACATTCCTTACATTCTACAAATAATATAGCTGCTTTTTTGGTAGTGATCT
TTAAACTCATTGCAATTTGTCCATCCAATTATCCTTAAAATTAATATGTT
CGCGAATACCAATTATAAAGGGGTACGCGAAAAAGGCACACAAATTGGTA
GGACTAAGGTATATCGGatggacaaaataaaatgaGTTTCGTAAAAGCCT
ATGTGGTTTTTGAAAAGGTCTACATGATTTTGACTACTCAAGCATGATGA
CAAATAAGCACTAGATGACTTCAAACAATGTGCTTGATCGTATCATCTAA
GGAGAGTTTCAATGCTCtgttattttcaactttttgtttcCAGGATCTGA
CGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGAGCGGACCAACAACAAAC
ACGGTTGAAGATCCGGCTCTGTACGATGAACAAGACCATctcgttctgta
aaatacatgcACTTGAGGTTTTTAATACAAGGCCATCCATCTTGAATTCT
TTTATTTCACACGCTATAagacttttttcgaaaaatgacgACCATACGCT
TCTTTTTGTAATCAgtcaaattgtaaattttttttgattttatttttaac
tgtaaattttttggtttaatttaTATATTGTAACATCAAGTTTTTGTTCA
TTGTGCACActataaaagataaaaaaatatatcagcAAACAAGATTAAAA
CGTGTCAGTTCTCACCTGAACGAAGTCTAAacataagcataaattaaggc
tgaaaatgagattttgttaAGCATACTcttgggtgcctaataaacgtaca
gaccaaaataaacgtacaggaggg

Coding sequence (CDS) from alignment at scaffold_102:544910..546383+

>TCONS_00045867 ID=TCONS_00045867|Name=TCONS_00045867|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_102:544910..546383+ (Clytia hemisphaerica)
atgcgagttgcgagttggtcctgcgagttgcgagttgctatcaaatatgc
gagttgcgagttgcaagttgcgagttacgagttacgNAAATATTCACAGA
GGATTCACGAACAAGAAGTATTGGGAAAGCAATTACGTGAGAAGCAGAAA
TATCTCCGAGAAAATCATGCTCCCAATATGCGCCAAATGAAAATGTGGAC
TGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGAGCGGACCAA
CAACAAACACGGTTGAAGATCCGGCTCTGTACGATGAACAAGACCATctc
gttctgtaaatgcgagttgcgagttggtcctgcgagttgcgagttgctat
caaatatgcgagttgcgagttgcaagttgcgagttacgagttacgNAAAT
ATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGCAATTACGTGAG
AAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATATGCGCCAAATGAA
AATGTGGACTGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGA
GCGGACCAACAACAAACACGGTTGAAGATCCGGCTCTGTACGATGAACAA
GACCATctcgttctgtaaatgcgagttgcgagttggtcctgcgagttgcg
agttgctatcaaatatgcgagttgcgagttgcaagttgcgagttacgagt
tacgNAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGCAA
TTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATATGCG
CCAAATGAAAATGTGGACTGATCTGACGCAACTGTTGAAGTGCAAGAAAG
AAAGCTTGAGCGGACCAACAACAAACACGGTTGAAGATCCGGCTCTGTAC
GATGAACAAGACCATctcgttctgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029311XLOC_029311Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045867-proteinTCONS_00045867-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045867-exon-scaffold_102-1491911889:544910..545052TCONS_00045867-exon-scaffold_102-1491911889:544910..545052Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1510915933:544910..545052TCONS_00045867-exon-scaffold_102-1510915933:544910..545052Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1575043694:544910..545052TCONS_00045867-exon-scaffold_102-1575043694:544910..545052Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1491911889:545402..545473TCONS_00045867-exon-scaffold_102-1491911889:545402..545473Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1510915933:545402..545473TCONS_00045867-exon-scaffold_102-1510915933:545402..545473Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1575043694:545402..545473TCONS_00045867-exon-scaffold_102-1575043694:545402..545473Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1491911889:545903..546383TCONS_00045867-exon-scaffold_102-1491911889:545903..546383Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1510915933:545903..546383TCONS_00045867-exon-scaffold_102-1510915933:545903..546383Clytia hemisphaericaexon
TCONS_00045867-exon-scaffold_102-1575043694:545903..546383TCONS_00045867-exon-scaffold_102-1575043694:545903..546383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:544910..546383 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.0457	21.722	15.9061	11.1657	23.6804	20.6759	19.3806	22.794	12.0658	11.9845	11.8705	12.4903	6.92314	8.03597	10.4122	11.5626	11.1828	10.4369	12.2769	13.7547	7.01094	6.77066	15.2966	10.134	25.7046	31.3387	7.30231	4.83658	9.14956	8.68271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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