TCONS_00045884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045884
Unique NameTCONS_00045884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045884 ID=TCONS_00045884|Name=TCONS_00045884|organism=Clytia hemisphaerica|type=transcript|length=1720bp
GACCTGTATGCTGGCATGACAGAACGTCAAATTCAAGCGATCAAAGACGA
AGCTAAAAAAGCAGAAATGGACAAAATGGAAAAGTTGAAGgaagatttgg
aaaaagagcGCTTGGAACTTGACGAACTCAAGAGAAAAATCAAGGTAGCA
ACAGACCTGTGCAACGATGCACAACGTATCGAACCACTTGGTTATGATCG
CCACGATCGTTCCTATTGGCTTTTCTCCAGAAACAATCCTGGAATCTACG
TCTCCTCTTTAGCATTATGGTATATAATTGACAACGGTGAAACTATCAAA
GACCTCACGTCAGCGCTGACTGTCCGCGGAATAAGAGAGGACAGACTAAA
AAGAGCCCTTCTTAGATTGCAACCAGAAATCAAAGAATCTATTCAAGTTT
TGAAAGAGTAAGTTTTGTTAATTTCACAATTATTTGTCATCCTTGCTCTT
ACTCTTTGTGGCAATTGAAGTAGAAAGAGGATCCCGCCGACGCGGGTGAC
ATGGGCCTTTTTATGGAGTAGTTGCATATCCTAGGATAGGGTTATCATTG
CGCTTACCAGACACCGTTGACACTGTTTTGGAGACTCAACAAAGCCATTG
TGTATTACTGACATTATTCGAAAAAGCATTGGAAGATTGCTCTCGGAAGG
ATATACAACGCTTGCTAACTTTCCAAATTTCTAAACTTCACTACTTCTTA
CAACCTTTCTTGGTATGTCCAAATCATTGTTTAACTTGCCAAGTCTTTTT
TTCTTAGGAGCGGGACGTCAATTTTAAAAGATGATTTCAAAGACATGCAA
TCAAAAGGATGCAGCATTTCAGTTATCAAAAATGACGGCACGCGAACGAT
ATACGGGAAAACTGACGTCGACAGAAGCTCCGATTCGGATGGCGATAAAC
CGCTTGTGAAATCAGTAGAGAAAATCGACGAGTCTAAAGAAAACAATAAA
GTTGTTATGAAATCAATCAAAGAGACTGACACCTCAAATGATATTTCTTC
CTCGAAAGATGCCGAAACTGTTAAGGAAAAGATCACAGAGAACGGTAGTA
TTAAAGATTCCGAAAAGGAGGAAAGTGAGAACACTAAAAGTGATTCTGTT
GACAAAGATGGCGAACCAATTAAAATGGAAACGGACTTGAACGAAACTAA
TGAAGTTAATGGAGTCATTAATAAAAAGGAAATAAATGATTCCACGAACA
AATTAGTTAAATCTACAGAGAAGTCTAGTGATGATGCTAGcgacaagaaa
aatgaaaatgcggACAGCAAATTAAACGGTGACGTTAAAACTAGTAAAGA
ACCTGAAAAGGCTTCTTCCATTGCTACTGCTGCtgaaaataaaagtgaaa
ttaaaACGGACACAGataaaaaatctaaatcaaaaGGGTCGGACTTTCCG
ACATCCATTGAAGCTTTGAAAGCAGATATTTTTGAATCTTCCGAACGGAT
AGTGCAAGGGACTCTTGGTCAGCTCAAGCGTTATGATGAATGGACAGCTT
CCTTGACCGCGGTTGAGGAGACCAAGGATTTGAAAACGTTTATCATTGAT
CTACAAAAATCAGTATTCGAGAAGAGCTTTTTATCACCCTTTAAAGGGTT
CGATCCAGCTTTTGTGAAAGAGTGGTTGAAATCTGTAGAACAAGCAGAAA
CACTATCTAAACTGCATACGCTTTATGGAATCTTGGAGAACAGCATTTCA
TGGGAAAAATCCTCCGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_102:249290..253188-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045884 ID=TCONS_00045884|Name=TCONS_00045884|organism=Clytia hemisphaerica|type=transcript|length=3899bp|location=Sequence derived from alignment at scaffold_102:249290..253188- (Clytia hemisphaerica)
GACCTGTATGCTGGCATGACAGAACGTCAAATTCAAGCGATCAAAGACGA
AGCTAAAAAAGCAGAAATGGACAAAATGGAAAAGTTGAAGTATGGTTTTT
CAACGAGTTTTCCTAGCATTCTGAACGTTCTAAATTCAACTCAAAATCCT
GGAGGGACAAACTGGACTTTTTAAAAGCTCTTCTTTGATTTGGTTGGTTG
TTAACCTGTAATAAAACAATTTTGTTGCTTATTCATAAGAAAGCGTCATC
TCTTTTACCTCGAATGACCAATATTAGTCAAATATCTTATAAAAACTCCA
GCTCATCCCTTCCCAGAGAACTTCATCTTGTAGCCTAGAACTTTGCACTT
TTTAGAATGTTGAGTACTCAAAAAAACTTCAAATATGTAAACGCAATAAA
ATCACAGAATGTAAACATTTTGCTGCTTTCCTAAATCTCTATAATACGAC
TGAAACTTAACTGATTGGAACTGAAAAGTCTCGTTGCTCTCATTTGATTT
AAGATGCAAACAGCAATAGATAGGACAAGAATTTGAGCGACAGTTTATTG
GAACTTTCCTCTCATCAGCATCAATGAAGACTAAAATAACGAAAATTTCC
AAATAATCAATCGTAAACTGTAGTCCCTAACAATCTTAATGACTACTCTT
TTTTAGGGAAGATTTGGAAAAAGAGCGCTTGGAACTTGACGAACTCAAGA
GAAAAATCAAGGTAAGACATTCCTTTACATTGCGAACCAGAAAGCCTGGG
ATAGGAGGATACTTACAAAAATTCTAGGAGCTTTGAAATAGTTTTTTCTG
TGATACTGATATACAGAGATTTAATCATCCATTTTCATACATTTTTTTGA
AATTTGGTCTATTCTACTCCATTTAGTTAACCCTTGTTATAACACTACAT
TTCTACCCTTCATAAAATATCATAAGAACATTTGAAATAAAATATTGGTG
AAAACGCCGTTTTGGTAAGACTCAAGGTAAGTACTGATGCCAGTCAAAAA
TTGTGTGAGGTTTTAAAAATTTCAAAAATTGGTAAAAAAACTAATTTTGG
TCATAACTTTTAAAGAATTTATTTTTTTCAAGTGGTATTTTTACTGCAAT
TTATCAATAGACAGCCCATCAAGTTAAAACACTAAGTGTCAGTCGCCAGG
TTTGAAGCCACCAAAATGACTCACAGTTTAGACTCTGTTTTCTGATGATA
TTGTCAGCCACTTTTTATGTAAGTTATATCACCATAAAGCCAGATAATTT
ATCTTAACCATGAATTTAGTTTAAAATGTCAGCCACCATTCGGTCTCATT
TTATGAGCAAAAAGGTGGCTGATTTTTCAAACCTCACATTTAGGGGGGGT
ATTTTTGACTGGCATCTACTTCCCGTACTAAGATTCCACTGCCAATTTTG
TAGTAGTTGAAAAATGAGCTTCAGAAAGTTAGGCGGTTTCCCTAGTCAAC
ACAGGATTTTCCCTACCTTTAGAAAATAACTTTTTAAATCACATGTTGAT
TTTCCCGGGGAAAATAGCGGTAATTTTTTCCGTAAAATCTCACTCCCTAA
ACGGCAGTGACCTCTGTTTCCCATCAATAGATGTCCCTAGAGAAATATAA
TCCACATCTTCTGATTTCTTATGTCTATCGATTGTTACTTTATAGGTAGC
AACAGACCTGTGCAACGATGCACAACGTATCGAACCACTTGGTTATGATC
GCCACGATCGTTCCTATTGGCTTTTCTCCAGAAACAATCCTGGAATCTAC
GTCTCCTCTTTAGCATTGTATGTATTCATTTTTACCCTTAAATCATGGAA
CAGTGGCCAGAGTTTTGAGGGGTGACGCAAATTCGTCGAAAACTGTCTAC
TGGAAGAGTGACCTTATCTTTCCTTACAGGTCCCCGGAAAAGACATAACC
CATAAATAGTTAAAAACTTTCATATCCTCGAGTAACAAGCATCTAGGTGC
ACCTCGTGTTTGGTGCACTTACCTTTTTTTCTTTGTTCTTGGAATTATAA
AATTCAATTGAGATTTTAATGCGCCTCGATCTTGTTCTGCGTCTTTTTTA
TTTCAAATTTTTTGAAATCATTTTGTTCAACATTTCCTTCTGTAGATGGT
ATATAATTGACAACGGTGAAACTATCAAAGACCTCACGTCAGCGCTGACT
GTCCGCGGAATAAGAGAGGACAGACTAAAAAGAGCCCTTCTTAGATTGCA
ACCAGAAATCAAAGAATCTATTCAAGTTTTGAAAGAGTAAGTTTTGTTAA
TTTCACAATTATTTGTCATCCTTGCTCTTACTCTTTGTGGCAATTGAAGT
AGAAAGAGGATCCCGCCGACGCGGGTGACATGGGCCTTTTTATGGAGTAG
TTGCATATCCTAGGATAGGGTTATCATTGCGCTTACCAGACACCGTTGAC
ACTGTTTTGGAGACTCAACAAAGCCATTGTGTATTACTGACATTATTCGA
AAAAGCATTGGAAGATTGCTCTCGGAAGGATATACAACGCTTGCTAACTT
TCCAAATTTCTAAACTTCACTACTTCTTACAACCTTTCTTGGTATGTCCA
AATCATTGTTTAACTTGCCAAGTCTTTTTTTCTTAGGAGCGGGACGTCAA
TTTTAAAAGATGATTTCAAAGACATGCAATCAAAAGGATGCAGCATTTCA
GTTATCAAAAATGACGGCACGCGAACGATATACGGGAAAACTGACGTCGA
CAGAAGCTCCGATTCGGATGGCGATAAACCGCTTGTGAAATCAGTAGAGA
AAATCGACGAGTCTAAAGAAAACAATAAAGTTGTTATGAAATCAATCAAA
GAGACTGACACCTCAAATGATATTTCTTCCTCGAAAGATGCCGAAACTGT
TAAGGAAAAGATCACAGAGAACGGTAGTATTAAAGATTCCGAAAAGGAGG
AAAGTGAGAACACTAAAAGTGATTCTGTTGACAAAGATGGCGAACCAATT
AAAATGGAAACGGACTTGAACGAAACTAATGAAGTTAATGGAGTCATTAA
TAAAAAGGAAATAAATGATTCCACGAACAAATTAGTTAAATCTACAGAGA
AGTCTAGTGATGATGCTAGCGACAAGAAAAATGAAAATGCGGACAGCAAA
TTAAACGGTGACGTTAAAACTAGTAAAGAACCTGAAAAGGCTTCTTCCAT
TGCTACTGCTGCTGAAAATAAAAGTGAAATTAAAACGGACACAGATAAAA
AATCTAAATCAAAAGGGTCGGACTTTCCGACATCCATTGAAGCTTTGAAA
GCAGATATTTTTGAATCTTCCGAACGGATAGTGCAAGGGACTCTTGGTCA
GCTCAAGCGTTATGATGAATGGACAGCTTCCTTGACCGCGGTTGAGGAGA
CCAAGGATTTGGTAAGTCGCATGTGGCCCAGTGTCCTGACGACATTAGTT
TAAACAATTTGTTATTGTTTCCATGTTCTAAGATATACGTTAAGATATTC
GAGCTGTCAGACTGGTGTGAGATTCTCACTCAATTTCTTCTTGCTTTTCG
TGAAATCGAAAATTTGAGGCAAGTCTAAAGAGCTGAACAAATTCAGCATT
CCTTGTATTCCCTTTTTTAGACTATGCTCTAGACTAAGATCTCCTTAAAG
TTTCTTAGATCTAGATCTAATTGGATACTATACTATTCACTNTCTAGACT
AAGATCTCCTTAAAGTTTCTTAGATCTAGATCTAATTGGATACTGTACTA
TTCACTTTTAGAAAACGTTTATCATTGATCTACAAAAATCAGTATTCGAG
AAGAGCTTTTTATCACCCTTTAAAGGGTTCGATCCAGCTTTTGTGAAAGA
GTGGTTGAAATCTGTAGAACAAGCAGAAACACTATCTAAACTGCATACGC
TTTATGGAATCTTGGAGAACAGCATTTCATGGGAAAAATCCTCCGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029319XLOC_029319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045884-exon-scaffold_102-1575043694:253100..253188TCONS_00045884-exon-scaffold_102-1575043694:253100..253188Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1575043694:252478..252532TCONS_00045884-exon-scaffold_102-1575043694:252478..252532Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1575043694:251422..251543TCONS_00045884-exon-scaffold_102-1575043694:251422..251543Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1575043694:249828..251093TCONS_00045884-exon-scaffold_102-1575043694:249828..251093Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1575043694:249290..249477TCONS_00045884-exon-scaffold_102-1575043694:249290..249477Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1510915933:253100..253188TCONS_00045884-exon-scaffold_102-1510915933:253100..253188Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1510915933:252478..252532TCONS_00045884-exon-scaffold_102-1510915933:252478..252532Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1510915933:251422..251543TCONS_00045884-exon-scaffold_102-1510915933:251422..251543Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1510915933:249828..251093TCONS_00045884-exon-scaffold_102-1510915933:249828..251093Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1510915933:249290..249477TCONS_00045884-exon-scaffold_102-1510915933:249290..249477Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1491911889:253100..253188TCONS_00045884-exon-scaffold_102-1491911889:253100..253188Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1491911889:252478..252532TCONS_00045884-exon-scaffold_102-1491911889:252478..252532Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1491911889:251422..251543TCONS_00045884-exon-scaffold_102-1491911889:251422..251543Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1491911889:249828..251093TCONS_00045884-exon-scaffold_102-1491911889:249828..251093Clytia hemisphaericaexon
TCONS_00045884-exon-scaffold_102-1491911889:249290..249477TCONS_00045884-exon-scaffold_102-1491911889:249290..249477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:249290..253188 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.014991	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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