TCONS_00045889 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045889
Unique Name	TCONS_00045889
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	693

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_102:325830..330273-

transcript sequence

>TCONS_00045889 ID=TCONS_00045889|Name=TCONS_00045889|organism=Clytia hemisphaerica|type=transcript|length=693bp
TAAATACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTATTTG
TCGTCGTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAATAA
GTTTATAATCATCGCTTTGGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGG
CTAGCAAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTC
CAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCAATGTCCACA
ACAGCAATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATG
GATGTGAGATCTGCAAATGCAACGAATGCCCACAAAGACAATGCAGAATG
CGATGCCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGTCA
ATGCAAAgAAGTTGCTCCAATGATGGACGAAAAATGCCCAGAAAGACAAT
GCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAA
ATCTGCAAGTGCAATGAATGTCCACAACAACAATGTCGTATGTTCTGCAA
AAATGGATTCCAAAAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACG
AATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACAA
GACAAAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAAAA

Run BLAST on NCBI

transcript from alignment at scaffold_102:325830..330273-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045889 ID=TCONS_00045889|Name=TCONS_00045889|organism=Clytia hemisphaerica|type=transcript|length=4444bp|location=Sequence derived from alignment at scaffold_102:325830..330273- (Clytia hemisphaerica)
TAAATACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTATTTG
TCGTCGTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAATAA
GTTTATAATCATCGCTTTGGTAAGTTGACTTTGAATATGGCATAGGGGAT
AGAGGATATAACATTTTTTGGAAATTTACCCCGCGGACAAGCATTCCTAG
ACATTAGCCTCAAACAGAGCAAAATTACCCCAAACAGAGCAAGTTCACCC
ACCGCAAGTGAACTTTCAAAATCTGCAGCAAGTTTGATGAAATATTTGAG
ATAAAAATCTCATTTGCTCAAAAGTGGGGAGGCTCAAGTCTCTCCAGTCT
CCCCGCTTCCTTCCACCGGGCCTGAGAATGATCTAAAATTGGATCTTCAT
TTTTTTTTAGAGTTTTATCCTTTCATTAAATGCAACTTTTCTTTTTATAA
TCAGGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAGTAAGTAGA
ATTGAAAATTTGATTTCATGTCGCTTACAAACACCCCTTTAGTGTAGTGG
CTTGGCTTGAAAAAATTCATTTTTTCATTTTTTATATTTTCATCTTAATT
GCCATCATAAAATACAACTTTGGGCCAAATATATTTTGAATTTCCGGTTA
TGACATCATCACTAAAATGGCCTAAAAAAGAGTATTCCACCGATGAAAAT
TTAGGGGAATTTTTTTATGTGGTTAAAGGATACTATAAGGAGGTGCAAAA
TTTTAAGCCGGGTTATTTTGAATTTCCTACAAAGAGTGCTTTTTTAGCTG
GCACGACCATACTACCTTTATGAGTGACCAAAAGAATTTTGATTCCCCAG
GTTGTCTATGCATGAAAGGTTAGGATGTGTGCCGCCCTTAAAAATACCTT
TTTGGACCTGGAAGTCGTTGCAAGGATTGAAAGTTTCAAGTTTTTAATTT
TTGAAAGATTGAAATTTTGTTAAATTAGTCCCAACAACAGTCGTAAAAAT
TCACAAAATTTTGCAACATTATTTTTCATAAAAACACGCTATACATTATT
TTTCAGAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTC
CAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCGTAAGATCAT
TGATTTCAAACTCCGAATAGGCAAGACCCGAGACTCTTGGATGGGAAATG
AATCCACTTATTTCTCATCCAAAATGCGTGACCCCGTGATTTTTACATAA
ACGCCAGAAAAGTTTTCACGCACCTGCCCACGTGAGTACGTTCGAAAAGG
TTTATTGAGGGGCATTACGCTAAGGTTTGTAACAACATCTGCATGGATAC
GAGCGCTTACTAAACTTGCCTTTATTTATAGAATGTCCACAACAGCAATG
CCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGATGTGAGA
TCTGCAAATGCAACGGTAAGGGAATAACTATTTAGAATTGATATTTATTT
AATGGATGCACATCCTGTTTTATGGGAAATACGAACTTTAATATACCTGA
GCTTTGATTGGATTTAATTTCGCGAGCCAAAAAATCACGAAATTTTCTGG
ATTTATTTTGACGAATTGGCGTTTTCAAATATTTCACGTTGTATTTTTGT
AAAAACGCAAATAATTTTATCTGATTTAAAGTATGTCTCAGTAAAAGATT
TCAGCCTATGCTGAACTAAATGTCATCACTGTAATACTTATGTAAACAGC
GTTAGTGCGTTGATTCGGTAAGCGGCAAATTGTCATCTTCTTCTCATTCT
TCGTTCTAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAATATGGC
TTCAAGAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGGTACTAA
AAAGATCGATTTTTTAACAATTGTACCTAACTTCTGTATTTCTGCATATG
ATTTTTATGTGATCTTAATAGTTCCAGGGAGGGGAGAGAAAAAAAATATT
TTGGGTTCCAAATGTCCTCTTATGCAGTTTTACAGCGTAGGAAAAATTGA
ATTTATAATGTTTTTAAGGGAGGTATCTTATTCTTAAGTAACTGGTGGAA
TGGTCGGTGGTGACTAACATATCCCTTCAACAATATTGCAAATAAAGGAA
AGGATTCACAGTTCATGTCCTAAATATCAATTTCTTTTTGTATTTCACAG
AATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAGCAA
GACAAAAATGGCTGCCAAATCTGCCAATGCAAAGGTCAGAAAATAAGCCC
TTCAGTGTTAAAAATATTTCATAAACAAATTCAAAACTTTGCAAAATCAA
AAGATTTCTGAATTCAAGATAACTGTTTTTCTCCAATTTTATTTCAGAAG
TCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGTATGTTC
TGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAATG
TAACAGTATGCAACTATATCAATTATTTTAGTTTAATATTTGTTAGATTT
GTGAAACTTGTAAGCCATTGGCACTCTCTAACACTCTGCTACTTCATTCA
ATTCAAATGATCTTCAAAACTTAAATAATGCAAATCTGACACTTTTTACC
GAAAGAAAATCACTTTTCACTAAAACTAAATTTTTCATCCTGACAGAATG
CCCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAACAAGACA
AAAATGGTTGCCAAATCTGTCAATGCAAAGGTTAGAAAAAAGTTTTTAAA
AAATATTGTTCAATTTCTATGAGAAAAGCGTTCACAGTATTTTTTCAGGT
TATCTAACGGTAAGAAAGCAACCCAAATTTGATTTAGGTCCCATAATCTG
ACTTATGTTTTATATTACATAAACAGGCAACCGAACTCTCAATTATATTT
TAGAAGTTGCTCCAATGATGGACGAAAAATGCCCAGAAAGACAATGCCGT
ATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTG
CAAGTGCAATGGTATACAACTATTAAACACGCCTAATTCCAGATAGCAAT
AGTATTTTGGAGAGAGGCTGAATGACATAATTCAAAGTCAGGGGAGAATT
TCCACGCCTGACAAATAATACTTGATACAGCTCAAAGCTTCAAACAATTT
TGAATTTTGAATTACCATCTAGCCTAAACTAGCTGTTTGTAAACCCGGGG
TCTTCGAAACACAAAAATGAAAAGTGAGAAAAAGTTGACACCCTGGGTAT
TCAGTGTACTGTTTCTATATCATTTAATTTATCCATGTCAGTGTACCAAC
CCCTTTCCACAGACCCATTGGGATCCCTTCCCACTGAAGGGAAAGTCCAA
AAAGTCGTCCCGGTGAAAATTATTCTCCAATTTTTATCCCCACTGAAAAT
AATCAATTAAACCAATCCTCACTGCAAAATGTTATGCTATTTTTTCCATC
CCCACTGAAATTTCTGACTTGAAAACAAAAGAATTGAAAGCCCAAGTCAT
AAAAAATACGGGAATATCAATCCCAATCGAGTTTCAATCTGTTATTTTTA
TCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGAGCAGGGGGTGTAGT
GTACTGTTTCTAAGAGGCTATTATTATCAGTGCTTGGGCAATGTTAATAT
ATCTATATTGCATGTNGGAGGTGTAGTGTACTGTTTCTAAGAGGCTATTA
CTATCAGTGCTTGGGCAATGTTTTAATATATCTATATTGCATGTTTTTAG
AATGTCCACAACAACAATGTCGTATGTTCTGCAAAAATGGATTCCAAAAG
AACGCCAACGGCTGTGAGATCTGCAAATGCAACGGTAAGGGAACTGTTTA
GTTGATTCAACTTGCCTGTATCACTAACCAAATAAAAGGGAGTAATCGAA
AGTGCTAAATCAGGAATAATGGAATATATCTTGCATGTTGTCCAAGAATA
GGACAATCCTAATGCTGAAAGCTCAGGCGACTCTTATATGAAAGCTTAAT
CTAAATACTGTAGGACAGTTAAACTTTCTCGTTCCCAGGGAAGTTTTCCT
ATAGCCACTATAGCGGAAAAAGGCCAACACGCGGGGAATGTAAAAGTGAT
TTAAATTTGTTAGGTGTTGTGTATTATCTACGTGTTTGTACGCAGCAAAA
AAGCAGGTATACCCTTAAAAACACCGGAAAGATCTTGGAAATGCCACCAA
AAATGTTTCCTCTGGATTGGAGAGAGTTTAGCTGTCCTACGGTACCTTGG
GAGGTGTAACTTGTTCTCTGCAACAAAATTACTTATAAATATTCTCTACA
GAATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACA
AGACAAAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029321	XLOC_029321	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_102	supercontig	scaffold_102:325830..330273 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.303151	0.427312	0.120164	1.1629	123.641	150.857	81.9902	215.542	59.7646	58.276	235.903	255.986	457.822	447.158	58.323	90.5397	16.5209	23.6656	0	1.50792	1.27111	2.49421

Blast

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BLAST of TCONS_00045889 vs. Swiss-Prot (Human)
Match: CRIM1 (Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.320e-19
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 3

Query:  354 CPNGFEQDKNGCQICQCKEVAPMMDEKCPERQ--CRMFCKNGFQKNANGCEICKCNECPQQ----QCRMFCKNGFQKNANGCEICKCNECPQRQCRMRCPNGFEQDKNGCQICQCK 683
            C NGF++D NGC+ CQC       +E C ER+  C + C  GF  +A  CEIC+C   P++     C  +C  G  KN +GC+IC+C +CP+  C   CP GF+QD +GC IC+C+
Sbjct:  482 CINGFKRDHNGCRTCQCINT----EELCSERKQGCTLNCPFGFLTDAQNCEICECRPRPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCR 593

HSP 2 Score: 84.3445 bits (207), Expect = 3.193e-18
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 3

Query:  270 CKNGFKKDVNGCEICKC----NECPQRQ--CRMRCPNGFEQDKNGCQICQCKEVAPMMDEKCPERQCRMFCKNGFQKNANGCEICKCNECPQQQCRMFCKNGFQKNANGCEICKCNE 602
            C NGFK+D NGC  C+C      C +R+  C + CP GF  D   C+IC+C+       +KC    C  +C  G  KN +GC+IC+C +CP+  C   C  GFQ++++GC ICKC E
Sbjct:  482 CINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDAQNCEICECRP----RPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCRE 594

The following BLAST results are available for this feature:

BLAST of TCONS_00045889 vs. Swiss-Prot (Human)

BLAST of TCONS_00045889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CRIM1	5.320e-19	43.10	Cysteine-rich motor neuron 1 protein OS=Homo sapie...	[more]

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TCONS_00045889 (transcript) - C. hemisphaerica