TCONS_00045890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045890
Unique NameTCONS_00045890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045890 ID=TCONS_00045890|Name=TCONS_00045890|organism=Clytia hemisphaerica|type=transcript|length=525bp
GGGTACTAGCTACTTAACACGTTATAAATACAGAGGATTTGCAAGACAGA
CATTCACATTGTTGTTGGTATTTGTCGTCGTAGCATCTCATATTTTCGCA
GAGCTCTTTATTCATCATGAATAAGTTTATAATCATCGCTTTGGTTGGTT
TGGCCTGTTTGGCTTTGTCAGAGGCTAGCAAATGTAGTCCAGTTATGTGC
AAAATGTTTTGCAAAAATGGATTCCAAAGAGATGCAAATGGTTGTGAAGT
CTGCAAATGCAATCAATGTCCACAACAGCAATGCCGTATGTTCTGCAAGA
ACGGGTTCAAAAAAGATGTCAATGGATGTGAGATCTGCAAATGCAACGAA
TGTCCAATGCAAAGGTGTCGTATGAGATGTGAATATGGCTTCAAGAAGGA
TGAAGAAGGCTGTGAAATCTGTGAATGCAATGAATGCCCACAAAGACAAT
GCAGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAA
ATCTGCCAATGCAAAGGTTAGAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_102:325830..330297-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045890 ID=TCONS_00045890|Name=TCONS_00045890|organism=Clytia hemisphaerica|type=transcript|length=4468bp|location=Sequence derived from alignment at scaffold_102:325830..330297- (Clytia hemisphaerica)
GGGTACTAGCTACTTAACACGTTATAAATACAGAGGATTTGCAAGACAGA
CATTCACATTGTTGTTGGTATTTGTCGTCGTAGCATCTCATATTTTCGCA
GAGCTCTTTATTCATCATGAATAAGTTTATAATCATCGCTTTGGTAAGTT
GACTTTGAATATGGCATAGGGGATAGAGGATATAACATTTTTTGGAAATT
TACCCCGCGGACAAGCATTCCTAGACATTAGCCTCAAACAGAGCAAAATT
ACCCCAAACAGAGCAAGTTCACCCACCGCAAGTGAACTTTCAAAATCTGC
AGCAAGTTTGATGAAATATTTGAGATAAAAATCTCATTTGCTCAAAAGTG
GGGAGGCTCAAGTCTCTCCAGTCTCCCCGCTTCCTTCCACCGGGCCTGAG
AATGATCTAAAATTGGATCTTCATTTTTTTTTAGAGTTTTATCCTTTCAT
TAAATGCAACTTTTCTTTTTATAATCAGGTTGGTTTGGCCTGTTTGGCTT
TGTCAGAGGCTAGCAGTAAGTAGAATTGAAAATTTGATTTCATGTCGCTT
ACAAACACCCCTTTAGTGTAGTGGCTTGGCTTGAAAAAATTCATTTTTTC
ATTTTTTATATTTTCATCTTAATTGCCATCATAAAATACAACTTTGGGCC
AAATATATTTTGAATTTCCGGTTATGACATCATCACTAAAATGGCCTAAA
AAAGAGTATTCCACCGATGAAAATTTAGGGGAATTTTTTTATGTGGTTAA
AGGATACTATAAGGAGGTGCAAAATTTTAAGCCGGGTTATTTTGAATTTC
CTACAAAGAGTGCTTTTTTAGCTGGCACGACCATACTACCTTTATGAGTG
ACCAAAAGAATTTTGATTCCCCAGGTTGTCTATGCATGAAAGGTTAGGAT
GTGTGCCGCCCTTAAAAATACCTTTTTGGACCTGGAAGTCGTTGCAAGGA
TTGAAAGTTTCAAGTTTTTAATTTTTGAAAGATTGAAATTTTGTTAAATT
AGTCCCAACAACAGTCGTAAAAATTCACAAAATTTTGCAACATTATTTTT
CATAAAAACACGCTATACATTATTTTTCAGAATGTAGTCCAGTTATGTGC
AAAATGTTTTGCAAAAATGGATTCCAAAGAGATGCAAATGGTTGTGAAGT
CTGCAAATGCAATCGTAAGATCATTGATTTCAAACTCCGAATAGGCAAGA
CCCGAGACTCTTGGATGGGAAATGAATCCACTTATTTCTCATCCAAAATG
CGTGACCCCGTGATTTTTACATAAACGCCAGAAAAGTTTTCACGCACCTG
CCCACGTGAGTACGTTCGAAAAGGTTTATTGAGGGGCATTACGCTAAGGT
TTGTAACAACATCTGCATGGATACGAGCGCTTACTAAACTTGCCTTTATT
TATAGAATGTCCACAACAGCAATGCCGTATGTTCTGCAAGAACGGGTTCA
AAAAAGATGTCAATGGATGTGAGATCTGCAAATGCAACGGTAAGGGAATA
ACTATTTAGAATTGATATTTATTTAATGGATGCACATCCTGTTTTATGGG
AAATACGAACTTTAATATACCTGAGCTTTGATTGGATTTAATTTCGCGAG
CCAAAAAATCACGAAATTTTCTGGATTTATTTTGACGAATTGGCGTTTTC
AAATATTTCACGTTGTATTTTTGTAAAAACGCAAATAATTTTATCTGATT
TAAAGTATGTCTCAGTAAAAGATTTCAGCCTATGCTGAACTAAATGTCAT
CACTGTAATACTTATGTAAACAGCGTTAGTGCGTTGATTCGGTAAGCGGC
AAATTGTCATCTTCTTCTCATTCTTCGTTCTAGAATGTCCAATGCAAAGG
TGTCGTATGAGATGTGAATATGGCTTCAAGAAGGATGAAGAAGGCTGTGA
AATCTGTGAATGCAATGGTACTAAAAAGATCGATTTTTTAACAATTGTAC
CTAACTTCTGTATTTCTGCATATGATTTTTATGTGATCTTAATAGTTCCA
GGGAGGGGAGAGAAAAAAAATATTTTGGGTTCCAAATGTCCTCTTATGCA
GTTTTACAGCGTAGGAAAAATTGAATTTATAATGTTTTTAAGGGAGGTAT
CTTATTCTTAAGTAACTGGTGGAATGGTCGGTGGTGACTAACATATCCCT
TCAACAATATTGCAAATAAAGGAAAGGATTCACAGTTCATGTCCTAAATA
TCAATTTCTTTTTGTATTTCACAGAATGCCCACAAAGACAATGCAGAATG
CGATGCCCAAATGGATTTGAGCAAGACAAAAATGGCTGCCAAATCTGCCA
ATGCAAAGGTCAGAAAATAAGCCCTTCAGTGTTAAAAATATTTCATAAAC
AAATTCAAAACTTTGCAAAATCAAAAGATTTCTGAATTCAAGATAACTGT
TTTTCTCCAATTTTATTTCAGAAGTCGCCCCAATGATGGACGAAAAATGT
CCAGAAAGACAATGCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGC
CAACGGATGTGAAATCTGCAAATGTAACAGTATGCAACTATATCAATTAT
TTTAGTTTAATATTTGTTAGATTTGTGAAACTTGTAAGCCATTGGCACTC
TCTAACACTCTGCTACTTCATTCAATTCAAATGATCTTCAAAACTTAAAT
AATGCAAATCTGACACTTTTTACCGAAAGAAAATCACTTTTCACTAAAAC
TAAATTTTTCATCCTGACAGAATGCCCACAAAGACAATGCAGAATGCGAT
GCCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGTCAATGC
AAAGGTTAGAAAAAAGTTTTTAAAAAATATTGTTCAATTTCTATGAGAAA
AGCGTTCACAGTATTTTTTCAGGTTATCTAACGGTAAGAAAGCAACCCAA
ATTTGATTTAGGTCCCATAATCTGACTTATGTTTTATATTACATAAACAG
GCAACCGAACTCTCAATTATATTTTAGAAGTTGCTCCAATGATGGACGAA
AAATGCCCAGAAAGACAATGCCGTATGTTCTGCAAGAACGGATTCCAAAA
GAACGCCAACGGATGTGAAATCTGCAAGTGCAATGGTATACAACTATTAA
ACACGCCTAATTCCAGATAGCAATAGTATTTTGGAGAGAGGCTGAATGAC
ATAATTCAAAGTCAGGGGAGAATTTCCACGCCTGACAAATAATACTTGAT
ACAGCTCAAAGCTTCAAACAATTTTGAATTTTGAATTACCATCTAGCCTA
AACTAGCTGTTTGTAAACCCGGGGTCTTCGAAACACAAAAATGAAAAGTG
AGAAAAAGTTGACACCCTGGGTATTCAGTGTACTGTTTCTATATCATTTA
ATTTATCCATGTCAGTGTACCAACCCCTTTCCACAGACCCATTGGGATCC
CTTCCCACTGAAGGGAAAGTCCAAAAAGTCGTCCCGGTGAAAATTATTCT
CCAATTTTTATCCCCACTGAAAATAATCAATTAAACCAATCCTCACTGCA
AAATGTTATGCTATTTTTTCCATCCCCACTGAAATTTCTGACTTGAAAAC
AAAAGAATTGAAAGCCCAAGTCATAAAAAATACGGGAATATCAATCCCAA
TCGAGTTTCAATCTGTTATTTTTATCCCCACTGGCTGAAAAAATCCTACC
GGGTCTGTGAGCAGGGGGTGTAGTGTACTGTTTCTAAGAGGCTATTATTA
TCAGTGCTTGGGCAATGTTAATATATCTATATTGCATGTNGGAGGTGTAG
TGTACTGTTTCTAAGAGGCTATTACTATCAGTGCTTGGGCAATGTTTTAA
TATATCTATATTGCATGTTTTTAGAATGTCCACAACAACAATGTCGTATG
TTCTGCAAAAATGGATTCCAAAAGAACGCCAACGGCTGTGAGATCTGCAA
ATGCAACGGTAAGGGAACTGTTTAGTTGATTCAACTTGCCTGTATCACTA
ACCAAATAAAAGGGAGTAATCGAAAGTGCTAAATCAGGAATAATGGAATA
TATCTTGCATGTTGTCCAAGAATAGGACAATCCTAATGCTGAAAGCTCAG
GCGACTCTTATATGAAAGCTTAATCTAAATACTGTAGGACAGTTAAACTT
TCTCGTTCCCAGGGAAGTTTTCCTATAGCCACTATAGCGGAAAAAGGCCA
ACACGCGGGGAATGTAAAAGTGATTTAAATTTGTTAGGTGTTGTGTATTA
TCTACGTGTTTGTACGCAGCAAAAAAGCAGGTATACCCTTAAAAACACCG
GAAAGATCTTGGAAATGCCACCAAAAATGTTTCCTCTGGATTGGAGAGAG
TTTAGCTGTCCTACGGTACCTTGGGAGGTGTAACTTGTTCTCTGCAACAA
AATTACTTATAAATATTCTCTACAGAATGCCCACAAAGACAATGCAGAAT
GCGATGTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGCC
AATGCAAAGGTTAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029321XLOC_029321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045890-exon-scaffold_102-1575043694:330155..330297TCONS_00045890-exon-scaffold_102-1575043694:330155..330297Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1575043694:329783..329819TCONS_00045890-exon-scaffold_102-1575043694:329783..329819Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1575043694:329134..329217TCONS_00045890-exon-scaffold_102-1575043694:329134..329217Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1575043694:328809..328892TCONS_00045890-exon-scaffold_102-1575043694:328809..328892Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1575043694:328381..328464TCONS_00045890-exon-scaffold_102-1575043694:328381..328464Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1575043694:325830..325922TCONS_00045890-exon-scaffold_102-1575043694:325830..325922Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1510915933:330155..330297TCONS_00045890-exon-scaffold_102-1510915933:330155..330297Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1510915933:329783..329819TCONS_00045890-exon-scaffold_102-1510915933:329783..329819Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1510915933:329134..329217TCONS_00045890-exon-scaffold_102-1510915933:329134..329217Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1510915933:328809..328892TCONS_00045890-exon-scaffold_102-1510915933:328809..328892Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1510915933:328381..328464TCONS_00045890-exon-scaffold_102-1510915933:328381..328464Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1510915933:325830..325922TCONS_00045890-exon-scaffold_102-1510915933:325830..325922Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1491911889:330155..330297TCONS_00045890-exon-scaffold_102-1491911889:330155..330297Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1491911889:329783..329819TCONS_00045890-exon-scaffold_102-1491911889:329783..329819Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1491911889:329134..329217TCONS_00045890-exon-scaffold_102-1491911889:329134..329217Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1491911889:328809..328892TCONS_00045890-exon-scaffold_102-1491911889:328809..328892Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1491911889:328381..328464TCONS_00045890-exon-scaffold_102-1491911889:328381..328464Clytia hemisphaericaexon
TCONS_00045890-exon-scaffold_102-1491911889:325830..325922TCONS_00045890-exon-scaffold_102-1491911889:325830..325922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:325830..330297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.124366	0.151404	0	0.71546	0.16687	0.562261	0	0	0	0	0	7.8117e-05	0	0	0	0.00216096	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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