TCONS_00045891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045891
Unique NameTCONS_00045891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045891 ID=TCONS_00045891|Name=TCONS_00045891|organism=Clytia hemisphaerica|type=transcript|length=754bp
CTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTCACACGTGT
TTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATATATACAGAG
GATTNTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATAAAT
ACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTATTTGTCGTC
GTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAATAAGTTTA
TAATCATCGCTTTGGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGC
AAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTCCAAAG
AGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCAATGTCCACAACAGC
AATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGATGT
GAGATCTGCAAATGCAACGAATGCCCACAAAGACAATGCAGAATGCGATG
CCCAAATGGATTTGAGCAAGACAAAAATGGCTGCCAAATCTGCCAATGCA
AAGAAGTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGT
ATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTG
CAAATGTAACAAATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATG
GATTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAG
AAAA
Run BLAST on NCBI

transcript from alignment at scaffold_102:325830..330418-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045891 ID=TCONS_00045891|Name=TCONS_00045891|organism=Clytia hemisphaerica|type=transcript|length=4589bp|location=Sequence derived from alignment at scaffold_102:325830..330418- (Clytia hemisphaerica)
CTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTCACACGTGT
TTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATATATACAGAG
GATTNTTTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATAAAT
ACAGAGGATTTGCAAGACAGACATTCACATTGTTGTTGGTATTTGTCGTC
GTAGCATCTCATATTTTCGCAGAGCTCTTTATTCATCATGAATAAGTTTA
TAATCATCGCTTTGGTAAGTTGACTTTGAATATGGCATAGGGGATAGAGG
ATATAACATTTTTTGGAAATTTACCCCGCGGACAAGCATTCCTAGACATT
AGCCTCAAACAGAGCAAAATTACCCCAAACAGAGCAAGTTCACCCACCGC
AAGTGAACTTTCAAAATCTGCAGCAAGTTTGATGAAATATTTGAGATAAA
AATCTCATTTGCTCAAAAGTGGGGAGGCTCAAGTCTCTCCAGTCTCCCCG
CTTCCTTCCACCGGGCCTGAGAATGATCTAAAATTGGATCTTCATTTTTT
TTTAGAGTTTTATCCTTTCATTAAATGCAACTTTTCTTTTTATAATCAGG
TTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAGTAAGTAGAATTGA
AAATTTGATTTCATGTCGCTTACAAACACCCCTTTAGTGTAGTGGCTTGG
CTTGAAAAAATTCATTTTTTCATTTTTTATATTTTCATCTTAATTGCCAT
CATAAAATACAACTTTGGGCCAAATATATTTTGAATTTCCGGTTATGACA
TCATCACTAAAATGGCCTAAAAAAGAGTATTCCACCGATGAAAATTTAGG
GGAATTTTTTTATGTGGTTAAAGGATACTATAAGGAGGTGCAAAATTTTA
AGCCGGGTTATTTTGAATTTCCTACAAAGAGTGCTTTTTTAGCTGGCACG
ACCATACTACCTTTATGAGTGACCAAAAGAATTTTGATTCCCCAGGTTGT
CTATGCATGAAAGGTTAGGATGTGTGCCGCCCTTAAAAATACCTTTTTGG
ACCTGGAAGTCGTTGCAAGGATTGAAAGTTTCAAGTTTTTAATTTTTGAA
AGATTGAAATTTTGTTAAATTAGTCCCAACAACAGTCGTAAAAATTCACA
AAATTTTGCAACATTATTTTTCATAAAAACACGCTATACATTATTTTTCA
GAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTCCAAAG
AGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCGTAAGATCATTGATT
TCAAACTCCGAATAGGCAAGACCCGAGACTCTTGGATGGGAAATGAATCC
ACTTATTTCTCATCCAAAATGCGTGACCCCGTGATTTTTACATAAACGCC
AGAAAAGTTTTCACGCACCTGCCCACGTGAGTACGTTCGAAAAGGTTTAT
TGAGGGGCATTACGCTAAGGTTTGTAACAACATCTGCATGGATACGAGCG
CTTACTAAACTTGCCTTTATTTATAGAATGTCCACAACAGCAATGCCGTA
TGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGATGTGAGATCTGC
AAATGCAACGGTAAGGGAATAACTATTTAGAATTGATATTTATTTAATGG
ATGCACATCCTGTTTTATGGGAAATACGAACTTTAATATACCTGAGCTTT
GATTGGATTTAATTTCGCGAGCCAAAAAATCACGAAATTTTCTGGATTTA
TTTTGACGAATTGGCGTTTTCAAATATTTCACGTTGTATTTTTGTAAAAA
CGCAAATAATTTTATCTGATTTAAAGTATGTCTCAGTAAAAGATTTCAGC
CTATGCTGAACTAAATGTCATCACTGTAATACTTATGTAAACAGCGTTAG
TGCGTTGATTCGGTAAGCGGCAAATTGTCATCTTCTTCTCATTCTTCGTT
CTAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAATATGGCTTCAA
GAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGGTACTAAAAAGA
TCGATTTTTTAACAATTGTACCTAACTTCTGTATTTCTGCATATGATTTT
TATGTGATCTTAATAGTTCCAGGGAGGGGAGAGAAAAAAAATATTTTGGG
TTCCAAATGTCCTCTTATGCAGTTTTACAGCGTAGGAAAAATTGAATTTA
TAATGTTTTTAAGGGAGGTATCTTATTCTTAAGTAACTGGTGGAATGGTC
GGTGGTGACTAACATATCCCTTCAACAATATTGCAAATAAAGGAAAGGAT
TCACAGTTCATGTCCTAAATATCAATTTCTTTTTGTATTTCACAGAATGC
CCACAAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAGCAAGACAA
AAATGGCTGCCAAATCTGCCAATGCAAAGGTCAGAAAATAAGCCCTTCAG
TGTTAAAAATATTTCATAAACAAATTCAAAACTTTGCAAAATCAAAAGAT
TTCTGAATTCAAGATAACTGTTTTTCTCCAATTTTATTTCAGAAGTCGCC
CCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGTATGTTCTGCAA
GAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAATGTAACA
GTATGCAACTATATCAATTATTTTAGTTTAATATTTGTTAGATTTGTGAA
ACTTGTAAGCCATTGGCACTCTCTAACACTCTGCTACTTCATTCAATTCA
AATGATCTTCAAAACTTAAATAATGCAAATCTGACACTTTTTACCGAAAG
AAAATCACTTTTCACTAAAACTAAATTTTTCATCCTGACAGAATGCCCAC
AAAGACAATGCAGAATGCGATGCCCAAATGGATTTGAACAAGACAAAAAT
GGTTGCCAAATCTGTCAATGCAAAGGTTAGAAAAAAGTTTTTAAAAAATA
TTGTTCAATTTCTATGAGAAAAGCGTTCACAGTATTTTTTCAGGTTATCT
AACGGTAAGAAAGCAACCCAAATTTGATTTAGGTCCCATAATCTGACTTA
TGTTTTATATTACATAAACAGGCAACCGAACTCTCAATTATATTTTAGAA
GTTGCTCCAATGATGGACGAAAAATGCCCAGAAAGACAATGCCGTATGTT
CTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAGT
GCAATGGTATACAACTATTAAACACGCCTAATTCCAGATAGCAATAGTAT
TTTGGAGAGAGGCTGAATGACATAATTCAAAGTCAGGGGAGAATTTCCAC
GCCTGACAAATAATACTTGATACAGCTCAAAGCTTCAAACAATTTTGAAT
TTTGAATTACCATCTAGCCTAAACTAGCTGTTTGTAAACCCGGGGTCTTC
GAAACACAAAAATGAAAAGTGAGAAAAAGTTGACACCCTGGGTATTCAGT
GTACTGTTTCTATATCATTTAATTTATCCATGTCAGTGTACCAACCCCTT
TCCACAGACCCATTGGGATCCCTTCCCACTGAAGGGAAAGTCCAAAAAGT
CGTCCCGGTGAAAATTATTCTCCAATTTTTATCCCCACTGAAAATAATCA
ATTAAACCAATCCTCACTGCAAAATGTTATGCTATTTTTTCCATCCCCAC
TGAAATTTCTGACTTGAAAACAAAAGAATTGAAAGCCCAAGTCATAAAAA
ATACGGGAATATCAATCCCAATCGAGTTTCAATCTGTTATTTTTATCCCC
ACTGGCTGAAAAAATCCTACCGGGTCTGTGAGCAGGGGGTGTAGTGTACT
GTTTCTAAGAGGCTATTATTATCAGTGCTTGGGCAATGTTAATATATCTA
TATTGCATGTNGGAGGTGTAGTGTACTGTTTCTAAGAGGCTATTACTATC
AGTGCTTGGGCAATGTTTTAATATATCTATATTGCATGTTTTTAGAATGT
CCACAACAACAATGTCGTATGTTCTGCAAAAATGGATTCCAAAAGAACGC
CAACGGCTGTGAGATCTGCAAATGCAACGGTAAGGGAACTGTTTAGTTGA
TTCAACTTGCCTGTATCACTAACCAAATAAAAGGGAGTAATCGAAAGTGC
TAAATCAGGAATAATGGAATATATCTTGCATGTTGTCCAAGAATAGGACA
ATCCTAATGCTGAAAGCTCAGGCGACTCTTATATGAAAGCTTAATCTAAA
TACTGTAGGACAGTTAAACTTTCTCGTTCCCAGGGAAGTTTTCCTATAGC
CACTATAGCGGAAAAAGGCCAACACGCGGGGAATGTAAAAGTGATTTAAA
TTTGTTAGGTGTTGTGTATTATCTACGTGTTTGTACGCAGCAAAAAAGCA
GGTATACCCTTAAAAACACCGGAAAGATCTTGGAAATGCCACCAAAAATG
TTTCCTCTGGATTGGAGAGAGTTTAGCTGTCCTACGGTACCTTGGGAGGT
GTAACTTGTTCTCTGCAACAAAATTACTTATAAATATTCTCTACAGAATG
CCCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACAAGACA
AAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029321XLOC_029321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045891-exon-scaffold_102-1575043694:330155..330418TCONS_00045891-exon-scaffold_102-1575043694:330155..330418Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1575043694:329783..329819TCONS_00045891-exon-scaffold_102-1575043694:329783..329819Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1575043694:329134..329217TCONS_00045891-exon-scaffold_102-1575043694:329134..329217Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1575043694:328809..328892TCONS_00045891-exon-scaffold_102-1575043694:328809..328892Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1575043694:327990..328073TCONS_00045891-exon-scaffold_102-1575043694:327990..328073Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1575043694:327769..327876TCONS_00045891-exon-scaffold_102-1575043694:327769..327876Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1575043694:325830..325922TCONS_00045891-exon-scaffold_102-1575043694:325830..325922Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:330155..330418TCONS_00045891-exon-scaffold_102-1510915933:330155..330418Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:329783..329819TCONS_00045891-exon-scaffold_102-1510915933:329783..329819Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:329134..329217TCONS_00045891-exon-scaffold_102-1510915933:329134..329217Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:328809..328892TCONS_00045891-exon-scaffold_102-1510915933:328809..328892Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:327990..328073TCONS_00045891-exon-scaffold_102-1510915933:327990..328073Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:327769..327876TCONS_00045891-exon-scaffold_102-1510915933:327769..327876Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1510915933:325830..325922TCONS_00045891-exon-scaffold_102-1510915933:325830..325922Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:330155..330418TCONS_00045891-exon-scaffold_102-1491911889:330155..330418Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:329783..329819TCONS_00045891-exon-scaffold_102-1491911889:329783..329819Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:329134..329217TCONS_00045891-exon-scaffold_102-1491911889:329134..329217Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:328809..328892TCONS_00045891-exon-scaffold_102-1491911889:328809..328892Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:327990..328073TCONS_00045891-exon-scaffold_102-1491911889:327990..328073Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:327769..327876TCONS_00045891-exon-scaffold_102-1491911889:327769..327876Clytia hemisphaericaexon
TCONS_00045891-exon-scaffold_102-1491911889:325830..325922TCONS_00045891-exon-scaffold_102-1491911889:325830..325922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:325830..330418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0250316	0	0	0	0	0	0.232864	0.119726	0.725682	0.232074	0	44.7116	49.1796	59.9519	106.187	27.3962	33.8632	167.557	168.197	204.011	227.819	27.5279	42.1882	0	0	0.714085	0.660656	3.41606	0.534739
Blast
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BLAST of TCONS_00045891 vs. Swiss-Prot (Human)
Match: CRIM1 (Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.055e-19
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:  415 CKNGFKKDVNGCEICKC----NECPQRQ--CRMRCPNGFEQDKNGCQICQCKEVAPMMDEKCPERQCRMFCKNGFQKNANGCEICKCNKCPQRQCRMRCPNGFEQDKNGCQICQCK 744
            C NGFK+D NGC  C+C      C +R+  C + CP GF  D   C+IC+C+       +KC    C  +C  G  KN +GC+IC+C KCP+  C   CP GF+QD +GC IC+C+
Sbjct:  482 CINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDAQNCEICECRP----RPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCR 593
The following BLAST results are available for this feature:
BLAST of TCONS_00045891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRIM16.055e-1943.10Cysteine-rich motor neuron 1 protein OS=Homo sapie... [more]
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