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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045895 ID=TCONS_00045895|Name=TCONS_00045895|organism=Clytia hemisphaerica|type=transcript|length=1172bpRun BLAST on NCBI protein sequence of antistasin >TCONS_00045895-protein ID=TCONS_00045895-protein|Name=antistasin|organism=Clytia hemisphaerica|type=polypeptide|length=290bp MNKFIIIALVGLACLALSEASKCSPVMCKMFCKNGFQRDANGCEVCKCNQRun BLAST on NCBI transcript from alignment at scaffold_102:325830..330476- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045895 ID=TCONS_00045895|Name=TCONS_00045895|organism=Clytia hemisphaerica|type=transcript|length=4647bp|location=Sequence derived from alignment at scaffold_102:325830..330476- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:325830..330476- >TCONS_00045895 ID=TCONS_00045895|Name=TCONS_00045895|organism=Clytia hemisphaerica|type=CDS|length=9603bp|location=Sequence derived from alignment at scaffold_102:325830..330476- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045895 vs. Swiss-Prot (Human)
Match: CRIM1 (Cysteine-rich motor neuron 1 protein OS=Homo sapiens GN=CRIM1 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.306e-18 Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 2
Query: 833 CPNGFEQDKNGCQICQCKEVAPMMDEKCPERQ--CRMFCKNGFQKNANGCEICKCNECPQQ----QCRMFCKNGFQKNANGCEICKCNECPQRQCRMRCPNGFEQDKNGCQICQCK 1162
C NGF++D NGC+ CQC +E C ER+ C + C GF +A CEIC+C P++ C +C G KN +GC+IC+C +CP+ C CP GF+QD +GC IC+C+
Sbjct: 482 CINGFKRDHNGCRTCQCINT----EELCSERKQGCTLNCPFGFLTDAQNCEICECRPRPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCR 593 HSP 2 Score: 80.8777 bits (198), Expect = 2.758e-16 Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 2
Query: 473 CKNGFKKDVNGCEICKCNECPMQRCRMRCEYGFKKDXXXXXXXXXXXXPQRQCRMRCPNGFEQDKNGCQICQCKEVAPMMDEKCPERQCRMFCKNGFQKNANGCEICKCNKCPQRQCRMRCPNGFEQDKNGCQICQCKEVA 895
C NGFK+D NGC C+C + C R ++ C + CP GF D C+IC+C+ +KC C +C G KN +GC+IC+C KCP+ C CP GF+QD +GC IC+C+E +
Sbjct: 482 CINGFKRDHNGCRTCQCINT-EELCSER---------------------KQGCTLNCPFGFLTDAQNCEICECRP----RPKKCRPIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCREAS 596 The following BLAST results are available for this feature:
BLAST of TCONS_00045895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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