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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045898 ID=TCONS_00045898|Name=TCONS_00045898|organism=Clytia hemisphaerica|type=transcript|length=2354bpRun BLAST on NCBI protein sequence of TCONS_00045898-protein >TCONS_00045898-protein ID=TCONS_00045898-protein|Name=TCONS_00045898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp MVKRKVSTNGDVKGSKKTKNEKPGMGKLQVTTPGETFGSLLGKVSIETFMRun BLAST on NCBI transcript from alignment at scaffold_102:350923..365184- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045898 ID=TCONS_00045898|Name=TCONS_00045898|organism=Clytia hemisphaerica|type=transcript|length=14262bp|location=Sequence derived from alignment at scaffold_102:350923..365184- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_102:350923..365184- >TCONS_00045898 ID=TCONS_00045898|Name=TCONS_00045898|organism=Clytia hemisphaerica|type=CDS|length=18513bp|location=Sequence derived from alignment at scaffold_102:350923..365184- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00045898 vs. Swiss-Prot (Human)
Match: RIOX2 (Ribosomal oxygenase 2 OS=Homo sapiens GN=RIOX2 PE=1 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.616e-78 Identity = 162/399 (40.60%), Postives = 232/399 (58.15%), Query Frame = 1
Query: 403 KRKVSTNGDVKGSKKTKNEK----PGMGKLQVTTPGETFGSLLGKVSIETFMKENWEQKFLHIKRED---QEYYGSLFSXXXXXXXXXXXXXXXXRDINCCRYVDGEKELLNEGEEISXXXXXXXXXXXXATLQFHQPQRFEDGLWNLMEKLETHFNSLVGANVYITPAESQGLAPHCDDVEIFVLQLEGKKTWKLYEPHVKLSRDYTQDLLQDAIGEPIYECTLEPGDMLYFPRGTIHQAKT-FGDSHSTHISMSTFQNHCVGDFMDHAVRMAIENAMEDDVTFRQGLPLNYRNFLGTQRDMSKYVEDDKEDKMSNEKDTEVMKFKKRIKDYLSKLVDHIDVNK--AADAMSSDFIGSRLPPFGHA-PPEVDENEAEPPTLDCQIKMRYPEHVRVMYL 1566
K K + +G +G K K G L +P F SL+ + ETF KE WEQK L I+R+D YYGSLF L LK + + RD+N CR V+G+K++LN+ + L + D+K+AT+QFHQPQRF+D LW + EKLE +F SLVG+NVYITPA SQGL PH DDVE+F+LQLEG+K W+LY P V L+R+Y+ + ++ IG P++E L+PGD+LYFPRGTIHQA T G +HSTH+++ST+QN+ GDF+ + + + ++DV R G+P R + VE T V +R+ +L L D ++ K + M DFI RLPP+ E+ + P LD +++++ +H+ + L
Sbjct: 4 KAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKSLCSRGMYYG-RDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEA-EERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIP----------RQLLLQVES-----------TTVAT--RRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLPRLDSVVRLQFKDHIVLTVL 377 The following BLAST results are available for this feature:
BLAST of TCONS_00045898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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