TCONS_00045901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045901
Unique NameTCONS_00045901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045901 ID=TCONS_00045901|Name=TCONS_00045901|organism=Clytia hemisphaerica|type=transcript|length=739bp
CTAACTAACCGCATAGCGCTGGAGATTGACGATTGGCGTTACAGAACATT
TTGATCATTGCCAAGATGTTAAAGTGTAAAACTCTGGTGGTAGTCTTGCT
ATTGGCTTTCGATGGATGCTTGGCTAAAATCAATATTAATCTGGATATCT
TGTCAGGGACTATTGATGCTGGTTCTTCATTGACCGGAACAACTGTCGAA
GGTCTGAAAGAATCCAAGTTTAGTGTTGCTGTATCTGGATCAATTGAGAA
TTACTCCACAAAAGCGGGAATTTAGCAACAGGCACATGGTTACGATGTAC
ATTCAAAATCGGAGATGAGTATGTTCATTTCATGTATTCGGCTCCTTATT
CTTTCGATCTCCATGGAAACACATTGGCTGTTGCTCTCTGTCCTCAGTCG
TCTAACGATTGCCAAAGCATGAATGCAAAGAAAATGTATTATGATAACAA
ACCATACATGGTTCGTCATACATATTACAATATCATCCGTGAAATCAGCA
AATgtggaaaaaacttttgcattcgTGGAAGTATGGGTACTAATCATAAA
CCAACAGTTCATTTGAAGTTGTTCCCAACAAAGTTTGATGATCTAGCGAC
TGCAGCTCGTGGCGAAGTTGAAGGTCGATGGAAGAAAGATGATTATGCAA
CATTTATCAAGGATCATTATTGATTTaatgcaaaatttaaaatttgtccT
TAGGTTGTCATTGctttgaaatatatttcatCCTTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00045901-protein

>TCONS_00045901-protein ID=TCONS_00045901-protein|Name=TCONS_00045901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MYSAPYSFDLHGNTLAVALCPQSSNDCQSMNAKKMYYDNKPYMVRHTYYN
IIREISKCGKNFCIRGSMGTNHKPTVHLKLFPTKFDDLATAARGEVEGRW
KKDDYATFIKDHY
Run BLAST on NCBI

transcript from alignment at scaffold_102:476037..476875-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045901 ID=TCONS_00045901|Name=TCONS_00045901|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at scaffold_102:476037..476875- (Clytia hemisphaerica)
CTAACTAACCGCATAGCGCTGGAGATTGACGATTGGCGTTACAGAACATT
TTGATCATTGCCAAGATGTTAAAGTGTAAAACTCTGGTGGTAGTCTTGCT
ATTGGCTTTCGATGGATGCTTGGCTAAAATCAATATTAATCTGGATATCT
TGTCAGGGACTATTGATGCTGGTTCTTCATTGACCGGAACAACTGTCGAA
GGTCTGAAAGAATCCAAGTTTAGTGTTGCTGTATCTGGATCAATTGAGAA
TTACTCCACATCTACGCTCCGGATGGAGGTTTGTGAGATCCAGGCAGGTT
ATGTCAACGTCCCAATGCAGAATGTAGCTTCTGGACAAAAAGAAGCCTTC
GCAAGCCACAAAAGCGGGAATTTAGCAACAGGCACATGGTTACGATGTAC
ATTCAAAATCGGAGATGAGTATGTTCATTTCATGTATTCGGCTCCTTATT
CTTTCGATCTCCATGGAAACACATTGGCTGTTGCTCTCTGTCCTCAGTCG
TCTAACGATTGCCAAAGCATGAATGCAAAGAAAATGTATTATGATAACAA
ACCATACATGGTTCGTCATACATATTACAATATCATCCGTGAAATCAGCA
AATGTGGAAAAAACTTTTGCATTCGTGGAAGTATGGGTACTAATCATAAA
CCAACAGTTCATTTGAAGTTGTTCCCAACAAAGTTTGATGATCTAGCGAC
TGCAGCTCGTGGCGAAGTTGAAGGTCGATGGAAGAAAGATGATTATGCAA
CATTTATCAAGGATCATTATTGATTTAATGCAAAATTTAAAATTTGTCCT
TAGGTTGTCATTGCTTTGAAATATATTTCATCCTTCAAT

Coding sequence (CDS) from alignment at scaffold_102:476037..476875-

>TCONS_00045901 ID=TCONS_00045901|Name=TCONS_00045901|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_102:476037..476875- (Clytia hemisphaerica)
ATGTATTCGGCTCCTTATTCTTTCGATCTCCATGGAAACACATTGGCTGT
TGCTCTCTGTCCTCAGTCGTCTAACGATTGCCAAAGCATGAATGCAAAGA
AAATGTATTATGATAACAAACCATACATGGTTCGTCATACATATTACAAT
ATCATCCGTGAAATCAGCAAATGTGGAAAAAACTTTTGCATTCGTGGAAG
TATGGGTACTAATCATAAACCAACAGTTCATTTGAAGTTGTTCCCAACAA
AGTTTGATGATCTAGCGACTGCAGCTCGTGGCGAAGTTGAAGGTCGATGG
AAGAAAGATGATTATGCAACATTTATCAAGGATCATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029325XLOC_029325Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045901-proteinTCONS_00045901-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045901-exon-scaffold_102-1575043694:476617..476875TCONS_00045901-exon-scaffold_102-1575043694:476617..476875Clytia hemisphaericaexon
TCONS_00045901-exon-scaffold_102-1575043694:476037..476516TCONS_00045901-exon-scaffold_102-1575043694:476037..476516Clytia hemisphaericaexon
TCONS_00045901-exon-scaffold_102-1510915933:476617..476875TCONS_00045901-exon-scaffold_102-1510915933:476617..476875Clytia hemisphaericaexon
TCONS_00045901-exon-scaffold_102-1510915933:476037..476516TCONS_00045901-exon-scaffold_102-1510915933:476037..476516Clytia hemisphaericaexon
TCONS_00045901-exon-scaffold_102-1491911889:476617..476875TCONS_00045901-exon-scaffold_102-1491911889:476617..476875Clytia hemisphaericaexon
TCONS_00045901-exon-scaffold_102-1491911889:476037..476516TCONS_00045901-exon-scaffold_102-1491911889:476037..476516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:476037..476875 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0891622	1.97932	2.0318	0.228062	0.448699	0	0	72.2638	93.4115	0.323603	0.189411	24.5034	28.3832	40.8468	47.8221	0.0917868	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015926Cytolysin/lectin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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