TCONS_00045904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045904
Unique NameTCONS_00045904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045904 ID=TCONS_00045904|Name=TCONS_00045904|organism=Clytia hemisphaerica|type=transcript|length=363bp
tgaCAATCTTTATTATTCATTATTCGAGAATATCATCTCCTTACCAGGGT
TGTGTACCCTGTTGTCCTGCTCATTGCATTTGCATCTGATACTGGTTATC
TGCCATATGTGTTCCATTCATTGCGTACTGTTCTTGGCCATTCTGCTGCC
ATCCTCCTTGTGTTGACATCTGGTTTTGGATCCCTAAAGGCTGTCCTCTA
TTCATTTCATATTGTGCTTGTGTACCCTGTTGTCCTCCTCCAATTGAGAT
CTGCTTTTGGATTCCTAAAGGCTGTCCTCCATTCATTCCGTATTGTGCTT
GGTAGCCTTGCTGTCCTCCTCCTGGTACACCAGATGTTGTTTTTGAGTCT
TCTTCATCCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_102:537319..538248-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045904 ID=TCONS_00045904|Name=TCONS_00045904|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at scaffold_102:537319..538248- (Clytia hemisphaerica)
TGACAATCTTTATTATTCATTATTCGAGAATATCATCTCCTTACCAGGGT
TGTGTACCCTGTTGTCCTGCTCATTGCATTTGCATCTGATACTGGTTATC
TGCCATATGTGTTCCATTCATTGCGTACTGTTCTTGGCCATTCTGCTGCC
ATCCTCCTTGTGTTGACATCTGGTTTTGGATCCCTAAAGGCTGTCCTCTA
TTCATTTCATATTGTGCTTGTGTACCCTGTTGTCCTCCTCCAATTGAGAT
CTGCTTTTGGATTCCTAAAGGCTGCCTTCCATTCATTGCGAATTGGGCTT
GGGTACCCTGTTGTCCTCCTCCAATTGAGATCTGCTTTTGGATTCCTAAA
GGCTGTCCTCCATTCATTGCGAATTGGGCTTGGGTACCCTGTTGTCCTCC
TCCAATTGAGATCTGCTTTTGGATTCCTAAAGGGTGTCCTCCATTCATTG
CGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGATCTGCTTT
TGGATTCCTAAAGGCTGTCCTCCATTCAATGCGAATTGGGCTTGGGTACC
CTGTTGTCCTCCTCCAATTGAGACCTGCTTTTGGATTCCTAAAGGGTGTC
CTCCATTCATTGCGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAATT
GAGATCTGCTTTTGGATTCCTAAAGGCTGTCCTCCATTCAATGCGAATTG
GGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGACCTGCTTTTGGATTC
CTAAAGGGTGTCCTCCATTCATTGCGAATTGGGCTTGGGTACCCTGTTGT
CCTCCTCCAATTGAGATCTGTTTTTGGATCCCTAAAGGCTGTCCTCCATT
CATTCCGTATTGTGCTTGGTAGCCTTGCTGTCCTCCTCCTGGTACACCAG
ATGTTGTTTTTGAGTCTTCTTCATCCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029328XLOC_029328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045904-exon-scaffold_102-1575043694:537979..538248TCONS_00045904-exon-scaffold_102-1575043694:537979..538248Clytia hemisphaericaexon
TCONS_00045904-exon-scaffold_102-1575043694:537319..537411TCONS_00045904-exon-scaffold_102-1575043694:537319..537411Clytia hemisphaericaexon
TCONS_00045904-exon-scaffold_102-1510915933:537979..538248TCONS_00045904-exon-scaffold_102-1510915933:537979..538248Clytia hemisphaericaexon
TCONS_00045904-exon-scaffold_102-1510915933:537319..537411TCONS_00045904-exon-scaffold_102-1510915933:537319..537411Clytia hemisphaericaexon
TCONS_00045904-exon-scaffold_102-1491911889:537979..538248TCONS_00045904-exon-scaffold_102-1491911889:537979..538248Clytia hemisphaericaexon
TCONS_00045904-exon-scaffold_102-1491911889:537319..537411TCONS_00045904-exon-scaffold_102-1491911889:537319..537411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:537319..538248 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.76718	5.50616	2.82872	1.78866	3.57757	3.20561	1.24225	1.80378	0.539665	0	0	0.276681	0.291291	0	0.062172	0.280768	0	0	0.489787	0	0	0	16.1498	13.9732	0	0.0894079	1.66481	2.04107	8.87468	19.4047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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