TCONS_00045905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045905
Unique NameTCONS_00045905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045905 ID=TCONS_00045905|Name=TCONS_00045905|organism=Clytia hemisphaerica|type=transcript|length=950bp
GATTTGTCAACCCAGGGTAGGTTTACTCGAAACTTATAGGACCGAGGCGC
CGCCATGGTTGGTCATTCGTTTGTAGATTTCTTTCATTGTTCTAGCTGAG
CAAAGCCTAAAGATCGTTTATGtgtatctattttcaaaattcgaGATTCC
AAGTTACAAGTCTTCCGAAATTATTGGCGTTTCAATTGTAGTCTCAGAGA
AAAGAATCTATCAAATTTACTtttcaaacataaaaagatttttcataaaa
aaataaaatttgttgaCAATCTTTATTATTCATTATTCGAGAATATCATC
TCCTTACCAGGGTTGTGTACCCTGTTGTCCTGCTCATTGCATTTGCATCT
GATACTGGTTATCTGCCATATGTGTTCCATTCATTGCGTACTGTTCTTGG
CCATTCTGCTGCCATCCTCCTTGTGTTGACATCTGGTTTTGGATCCCTAA
AGGCTGTCCTCTATTCATTTCATATTGTGCTTGTGTACCCTGTTGTCCTC
CTCCAATTGAGATCTGCTTTTGGATTCCTAAAGGCTGCCTTCCATTCATT
GCGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGATCTGCTT
TTGGATTCCTAAAGGCTGTCCTCCATTCATTGCGAATTGGGCTTGGGTAC
CCTGTTGTCCTCCTCCAATTGAGATCTGCTTTTGGATTCCTAAAGGGTGT
CCTCCATTCATTGCGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAAT
TGAGATCTGCTTTTGGATTCCTAAAGGGTGTCCTCCATTCATTGCGAATT
GGGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGATCTGTTTTTGGATC
CCTAAAGGCTGTCCTCCATTCATTCCGTATTGTGCTTGGTAGCCTTGCTG
TCCTCCTCCTGGTACACCAGATGTTGTTTTTGAGTCTTCTTCATCCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_102:537319..538511-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045905 ID=TCONS_00045905|Name=TCONS_00045905|organism=Clytia hemisphaerica|type=transcript|length=1193bp|location=Sequence derived from alignment at scaffold_102:537319..538511- (Clytia hemisphaerica)
GATTTGTCAACCCAGGGTAGGTTTACTCGAAACTTATAGGACCGAGGCGC
CGCCATGGTTGGTCATTCGTTTGTAGATTTCTTTCATTGTTCTAGCTGAG
CAAAGCCTAAAGATCGTTTATGTGTATCTATTTTCAAAATTCGAGATTCC
AAGTTACAAGTCTTCCGAAATTATTGGCGTTTCAATTGTAGTCTCAGAGA
AAAGAATCTATCAAATTTACTTTTCAAACATAAAAAGATTTTTCATAAAA
AAATAAAATTTGTTGACAATCTTTATTATTCATTATTCGAGAATATCATC
TCCTTACCAGGGTTGTGTACCCTGTTGTCCTGCTCATTGCATTTGCATCT
GATACTGGTTATCTGCCATATGTGTTCCATTCATTGCGTACTGTTCTTGG
CCATTCTGCTGCCATCCTCCTTGTGTTGACATCTGGTTTTGGATCCCTAA
AGGCTGTCCTCTATTCATTTCATATTGTGCTTGTGTACCCTGTTGTCCTC
CTCCAATTGAGATCTGCTTTTGGATTCCTAAAGGCTGCCTTCCATTCATT
GCGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGATCTGCTT
TTGGATTCCTAAAGGCTGTCCTCCATTCATTGCGAATTGGGCTTGGGTAC
CCTGTTGTCCTCCTCCAATTGAGATCTGCTTTTGGATTCCTAAAGGGTGT
CCTCCATTCATTGCGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAAT
TGAGATCTGCTTTTGGATTCCTAAAGGCTGTCCTCCATTCAATGCGAATT
GGGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGACCTGCTTTTGGATT
CCTAAAGGGTGTCCTCCATTCATTGCGAATTGGGCTTGGGTACCCTGTTG
TCCTCCTCCAATTGAGATCTGCTTTTGGATTCCTAAAGGCTGTCCTCCAT
TCAATGCGAATTGGGCTTGGGTACCCTGTTGTCCTCCTCCAATTGAGACC
TGCTTTTGGATTCCTAAAGGGTGTCCTCCATTCATTGCGAATTGGGCTTG
GGTACCCTGTTGTCCTCCTCCAATTGAGATCTGTTTTTGGATCCCTAAAG
GCTGTCCTCCATTCATTCCGTATTGTGCTTGGTAGCCTTGCTGTCCTCCT
CCTGGTACACCAGATGTTGTTTTTGAGTCTTCTTCATCCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029328XLOC_029328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045905-exon-scaffold_102-1575043694:537736..538511TCONS_00045905-exon-scaffold_102-1575043694:537736..538511Clytia hemisphaericaexon
TCONS_00045905-exon-scaffold_102-1575043694:537319..537492TCONS_00045905-exon-scaffold_102-1575043694:537319..537492Clytia hemisphaericaexon
TCONS_00045905-exon-scaffold_102-1510915933:537736..538511TCONS_00045905-exon-scaffold_102-1510915933:537736..538511Clytia hemisphaericaexon
TCONS_00045905-exon-scaffold_102-1510915933:537319..537492TCONS_00045905-exon-scaffold_102-1510915933:537319..537492Clytia hemisphaericaexon
TCONS_00045905-exon-scaffold_102-1491911889:537736..538511TCONS_00045905-exon-scaffold_102-1491911889:537736..538511Clytia hemisphaericaexon
TCONS_00045905-exon-scaffold_102-1491911889:537319..537492TCONS_00045905-exon-scaffold_102-1491911889:537319..537492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:537319..538511 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13783	2.75168	0.412268	0.263936	1.69148	2.06712	0.407815	0.0184235	0	0.246265	0.332494	0	0.262078	0.0812297	0.000432514	0	0	0.00056481	0.168639	0.273369	0	0	4.60119	4.61157	0.00615712	0	0.866089	0	2.99073	3.42155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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