TCONS_00045912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045912
Unique NameTCONS_00045912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045912 ID=TCONS_00045912|Name=TCONS_00045912|organism=Clytia hemisphaerica|type=transcript|length=381bp
GTGGTGAAGTGAGATATTCtgtgtttgaaaatattttgtagaaaaaaatg
tatataaaCATAGACAGTGAAATGAGTGTTGAGGAACCATGTACTTAGGA
TTGTATTACTTGGTATAGACATATTTCATGTCTATACCGCCTCAACCACT
ATCTCATAGGTACATTAAGATATCAATGGTACATAACTCATTTCTCTTGT
TAAACATGTTGATTAATTGTAAAGAATTTTCTTACCTTCTCTTTCGAGAA
ATGTGGTATCAAAATTTGAAGCCATTGTAGATAAATTAGATGAACGATAA
ACGTAGATAACTTTTTGAAGATTAGCTCTTTACTTCTTTGTGGTCAGTAT
GGAAAGGATTTCTTCCTCgtgattttcgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_102:266765..267145

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045912 ID=TCONS_00045912|Name=TCONS_00045912|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_102:266765..267145 (Clytia hemisphaerica)
tttcgaaaatcacGAGGAAGAAATCCTTTCCATACTGACCACAAAGAAGT
AAAGAGCTAATCTTCAAAAAGTTATCTACGTTTATCGTTCATCTAATTTA
TCTACAATGGCTTCAAATTTTGATACCACATTTCTCGAAAGAGAAGGTAA
GAAAATTCTTTACAATTAATCAACATGTTTAACAAGAGAAATGAGTTATG
TACCATTGATATCTTAATGTACCTATGAGATAGTGGTTGAGGCGGTATAG
ACATGAAATATGTCTATACCAAGTAATACAATCCTAAGTACATGGTTCCT
CAACACTCATTTCACTGTCTATGtttatatacatttttttctacaaaata
ttttcaaacacaGAATATCTCACTTCACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029335XLOC_029335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045912-exon-scaffold_102-1491911889:266765..267145TCONS_00045912-exon-scaffold_102-1491911889:266765..267145Clytia hemisphaericaexon
TCONS_00045912-exon-scaffold_102-1510915933:266765..267145TCONS_00045912-exon-scaffold_102-1510915933:266765..267145Clytia hemisphaericaexon
TCONS_00045912-exon-scaffold_102-1575043694:266765..267145TCONS_00045912-exon-scaffold_102-1575043694:266765..267145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:266765..267145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.618798	0	0.820874	0.400048	1.11264	0.685198	1.93787	0.631597	0.965059	1.01195	1.03018	0.729249	0.751738	2.81171	1.89481	1.30116	0.852882	2.84735	2.77307	0.939472	3.86694	2.28502	1.38353	3.11525	0	0.395293	3.65655	2.25994	2.41404	3.88976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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