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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045934 ID=TCONS_00045934|Name=TCONS_00045934|organism=Clytia hemisphaerica|type=transcript|length=292bp
AAAAGATTTCGGCTTTCCTAAATGTGTCAAGTTCGAATACAAAACCGACA
CTGATTTGTTCGAATTTGTAGCGGCCAAAACAATAGTGGCTTCGTTGAAT
TTTTCACCAGATGAAAAACAGTTCGTTACTGTTTCTCCTGACAGGAAGAT
ACGGCTCTTCCGGTTTTTGACCGGCAAAAAGACACGCGTgttcgatgaaa
atttgaaaacatttactACAATGCAACAGGAGAAACAAATTTTACCGAAC
ATGGAATTCGGTCGACGGATGGCGAGCGAAAGAGAGTTGGAG Run BLAST on NCBI transcript from alignment at scaffold_104:36902..38649+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045934 ID=TCONS_00045934|Name=TCONS_00045934|organism=Clytia hemisphaerica|type=transcript|length=1748bp|location=Sequence derived from alignment at scaffold_104:36902..38649+ (Clytia hemisphaerica)
AAAAGATTTCGGCTTTCCTAAATGTGTCAAGTTCGAATACAAAACCGACA
CTGATTTGTTCGAATTTGTAGCGGTAAGAACTTTGTATGCcaataaataa
aatttgacaTTATCTTGCTCTCGTATAACATCGATGGGACCACAACTCTC
CTAAGAATTGCTTGTCCCCTATGTGAGTTCCCCACCCCCTTTTGGATCAT
GCTGGGTCTGTCCCCTCTAAGCTCTAAGGTGAAGTTATATGTAACTCAAG
GGGTTGAGGTTGACGCTTTTTTCTAGAAAATGTTGTTTACAAACAAACCA
GAAAGTCTCTctcaaataaaaagattttacagattttctgtAGCTTAAAA
ACATTTGGACTCATTGTCCCATTCCATTCTTAAGTTTGGCAAGCTAGAAA
AGGAAGACATCGTCGGTTGCCGGTTGTCAGTTGTCGGTCGTCGGTTGCCA
ATGTTTGTTATTCTTTTCTTCTGAACTTTGTTTATACTTTGTTTAATTCC
AGGCCAAAACAATAGTGGCTTCGTTGAATTTTTCACCAGATGAAAAACAG
TTCGTTACTGTTTCTCCTGACAGGAAGGTTTGTGCCATCTCATTTCATTA
TGACCTTTACCCTGTACCCATAGTATTTTTCACGTTTATCGTTTCCACTC
ACataagttggagattttgaGTATGGATCTAGACTCAAATTTCACTTCAA
CTAGAAGCTCATCATAATCAAGATTTGAAGAATTTGTTTTGCCCAAAGGA
AGGACTCTGCAATGTCAAGAGAGTGTGAGCCATTTACTGCAAAATATCCA
AATAAAAGAGGGCAATATTTAAAAGCAGATAAGATTAAACTATTAAATTA
AAAATCTGCTTGATTCTGGTTCAAATATGATCTCTATACGAGTACTATCA
ATAAGTTATACCAAGTAATTTAAcagttcgaattacatgagttttATCCT
TTTTTTCAGATACGGCTCTTCCGGTTTTTGACCGGCAAAAAGACACGCGT
gttcgatgaaaatttgaaaacatttactACAATGCAACAGGTAGCGTCTG
GTCGAAATAAGCTTTTTTCTTTCAGGTCGGTTACTTTAATGAATTCCACG
TGTTTAGTGCCGCCCGTCTTAGATCCGACAAaggagaaaaaatgttttta
ttcttGTTGTTATTCCGTTTTATTCTCACATGAATATTagtttaaaaatg
ttcaaatttcaAACCTGGGGTAGTGCTCATCTCTGGCCATCAACTTTGCT
AGTCTTGTCCTTTTTTCAGAATTCTTTAAGGAAACCCCGACAACGGTTTA
CAAAATTGGGCTCTTGTCTATTTTTCTTAACAattaaaagatttcaaatc
cCCCTGTATCCTAGGATATTGAATATTTGAACTCTTCCCTCTGGATATCC
TTGGTCTTcgaatttttaccccctggatattgaaaatataaaaccccctg
gatatcatATAAAATTCTCGACAGGGGGTACGgatatttttctggaaaag
cccattgcgTCAATTGGCTCAATTTTCTTCGTTGCGTCAATTGTGAAAAA
GATTTTGCGCGAATGCGTGAAATTAGGTTGCTTGAACGTGAATAATGAAT
TTtggagtaatcacatgtttttttggtgtttgtctttttattttgaaatc
tgtGTATAATTATTAATTATTTACCCATTTTTTAGGAGAAACAAATTTTA
CCGAACATGGAATTCGGTCGACGGATGGCGAGCGAAAGAGAGTTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045934-exon-scaffold_104-1491911889:36902..36974 | TCONS_00045934-exon-scaffold_104-1491911889:36902..36974 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1510915933:36902..36974 | TCONS_00045934-exon-scaffold_104-1510915933:36902..36974 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1575043694:36902..36974 | TCONS_00045934-exon-scaffold_104-1575043694:36902..36974 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1491911889:37404..37478 | TCONS_00045934-exon-scaffold_104-1491911889:37404..37478 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1510915933:37404..37478 | TCONS_00045934-exon-scaffold_104-1510915933:37404..37478 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1575043694:37404..37478 | TCONS_00045934-exon-scaffold_104-1575043694:37404..37478 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1491911889:37861..37941 | TCONS_00045934-exon-scaffold_104-1491911889:37861..37941 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1510915933:37861..37941 | TCONS_00045934-exon-scaffold_104-1510915933:37861..37941 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1575043694:37861..37941 | TCONS_00045934-exon-scaffold_104-1575043694:37861..37941 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1491911889:38587..38649 | TCONS_00045934-exon-scaffold_104-1491911889:38587..38649 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1510915933:38587..38649 | TCONS_00045934-exon-scaffold_104-1510915933:38587..38649 | Clytia hemisphaerica | exon |
| TCONS_00045934-exon-scaffold_104-1575043694:38587..38649 | TCONS_00045934-exon-scaffold_104-1575043694:38587..38649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:36902..38649 + |
Blast
BLAST of TCONS_00045934 vs. Swiss-Prot (Human)
Match: PPWD1 (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.124e-34 Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 2
Query: 2 KDFGFPKCVKFEYKTDTDLFEFVAAKTIVASLNFSPDEKQFVTVSPDRKIRLFRFLTGKKTRVFDENLKTFTTMQQEKQILPNMEFGRRMASERELE 292
++ FPK V +EYKTDTDL+EF K S+ FSPD K+ T+ DRK+R+FRF+TGK RVFDE+L FT +QQ +Q LP+MEFGRRMA ERELE
Sbjct: 255 HEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELE 351
The following BLAST results are available for this feature:
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