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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045935 ID=TCONS_00045935|Name=TCONS_00045935|organism=Clytia hemisphaerica|type=transcript|length=615bp
GGTGATATACATTTCAAGCTGTTTCCCAAAGAATGTCCGAAAACAGTAGA
GAATTTTGTCACTCATTGTCGAAATGGATATTACAACGGACACGTCTTTC
ATCGAATCATTAAACAGTTCATGTTGCAAACGGGTGACCCTCTAGGTGAC
GGTACGGGTGGAGAAAGTATTTGGGGCGGCGAATTCGAAGACGAATTTCA
TCACACCCTTCGCCATGATCGCCCCTACACATTGAGCATGGCAAACGCAG
GCCCGAATACCAATGGCAGTCAATTCTTTATCACCGTTGTCCCCACTccC
TGGCTGGACAATAAGCATACAGTGTTCGGACGTGTCGTCAAAGGGATGGA
TATCTGCCAACAGATGAGCATGGTGAAAACATACGCCAGAAACGATAAAC
CgtacgatgaaatcaaaattgtaaaCATGGTTGTTAAATAGCGCCAGATC
TCTCATGACTGACTCATCGTAAATCGTCTGTCGATTTAGTTTTAGATCAC
GATTAACCATTACCTAaccttttatacggaaacatcCCAAAAAACCGGGT
GTTTGCCACCAGTTTTTGAATTTGTAACAATAACACTTACTCTTTTGTGC
CTAATTGTAGGGGGT Run BLAST on NCBI protein sequence of TCONS_00045935-protein >TCONS_00045935-protein ID=TCONS_00045935-protein|Name=TCONS_00045935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
GDIHFKLFPKECPKTVENFVTHCRNGYYNGHVFHRIIKQFMLQTGDPLGD
GTGGESIWGGEFEDEFHHTLRHDRPYTLSMANAGPNTNGSQFFITVVPTP
WLDNKHTVFGRVVKGMDICQQMSMVKTYARNDKPYDEIKIVNMVVK Run BLAST on NCBI transcript from alignment at scaffold_104:42105..51177+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045935 ID=TCONS_00045935|Name=TCONS_00045935|organism=Clytia hemisphaerica|type=transcript|length=9073bp|location=Sequence derived from alignment at scaffold_104:42105..51177+ (Clytia hemisphaerica)
GGTGATATACATTTCAAGCTGTTTCCCAAAGAGTATGTCATTTTTTATAT
ATGCATTGATTAAGGCACCTTTATATTTGTGCCTTACAGGAGTGGTGGAT
CAACTGGCCATTTCACTGAAAATACGATAAAACCTCCTTTCTCTCCCCTT
GTTAACTCTTAACCAAGATAAGtcgtaaaattgaaaaatcgggaaaaatt
aAAGTGGTAAAACTTTCCTAAAATTTGCGAAACTAcggaaattttttaaa
acaagaGTCTCCAGTGAGTCTCCTTCCATGTAGGTAGGTAGGGGAGATAG
GAACTAATCTCAAAATGCCACAAGCCCTTCGCCACGTTTGTTTACGGtta
gtttgaaaaatctcaaactaTAAATTGCGAATGGGAACAAACCAACGGAA
ATAAACGCTTAAATTTTCAGTAGATAATACAGACAAGAGATGCAGGAAAT
GCAGGTGTTTTCCTCCCTATCCTGTAGGTAGATAGGTAGGATAGGAACTA
AGCTCCCACAAAAAAAGGTTAGTTTCTCAGGGAGTAGCGTCCCTGCCTTT
CCCAGCTAGATCTTCGCCATCATTGCATAGTTTACACGGTGAATGATCAA
AAGTAACGAGTAACAAGAAAAGGTTTTAGTCATGTTTAGCCCCGAAAACT
GTCATTTTAGCCTACATTTTGATAGAATCAAAGAACTTCGTTATAGTTTA
TAGTTTATTATAGTTTTGACTTAATTATAGTTCCTTAATAGAATTTAAGG
GAGAAATGGTATAGAATTATCCTCGACTAACTATAAGCGAAACattactt
tgcaaaaaagtgagaTGGCCACATGCTTCTAAAAAGCCAAGAGTTATAGG
ATTTATGTCAAAGGACCAAAACCACACCTTTACCTTTAAAATGCTTTCAA
TAAAGTAAATAAACGcacacttttttttaagaaagatttTATACTTTATG
TTCCTGTAGTTGTAGAAAATAAGCGCTTCTTTTAATTCTCCTTACTTTAA
TGAGAAAGCCCTCTTCAATTATATAAGATTTCTCTattaatgacgtcatt
aattaTAACATTTCTCTTCATAGCGACAAGCAAATAAAGTCGTTAAAGAA
AGCAAATGAAACGGTTAAACATAAATAACATCAGGGTGCAAGCATAACAT
CATATTGTGATAATATAAGACAGTGAAATCTTAGGCTTTGATGATGAAGT
TCTGTTTGTAAAGTTTGgctgtgttttgttttttaacttGATTTATCTCT
TTCAATATCGCCAGAAAGAGAAAATTTCCGGATTCCAGCAACTGACAAAA
TGAGAAAGTTTGCAGGGCGATTTTTCACTGATGAAAAGACTTGAAACCgt
catttttgttttaatcgaaagtaaattttatcAACTTGCAATTTCAAAGC
GAGTGAAAGGTTCTATCAGAGGCTATAAGGTGAAGAAGACGTCGTGCCAA
TAGGAACGAATTTTGGCTGGGCGGTATCGAAAGAGTTAAGCACGACGATA
GTTGAAAGGATAAATTCAAAAACTCGGTGCAGTGAAGAAGCGGATCACTA
AGGCCGGTCCGGCCGCGCACCCGCCGCGCAGCACCCGACCTTTTTTGTGG
TTGAAATTCCCTAGAGAAGATTACGTCATTGAAAAAAAGCACCGcgctca
aaaaagaaaattgacaactgttctacttttttttcgaagtcGCGCGAACT
GTAACGTCATATTTAACCAACCGAATGGCTTCGTTTATTTCTAGGCCAAT
GGTGTTCTAGTATTACGTCATGTTACAAAAAAGTCGAGTGCTGCGCGACG
CTGAATGGCCTTTAGTTCCTTGATTTTACTGTATATATATATTAAGATTA
CGACACTTCCTCAGCAAGAATAGCGGGTTTAAATCATGATTCCGCTAGTA
AAAGATACGATCCATATGaatattgtatatttttaatGAAGTAACTGTAG
ATACGTAACGTTATTTTAACGTCAGAACATTATTTGGAATAGCGTTGTTG
TGTGCCTCCCGAGGAACGATCCTACGAACTCTGTGTGTTTGTGGTTTACC
AACACTGACACTTTGGAAACGTAAACTGCATCCATTGGTCATTGGtgcaa
aaattcatgatatgcgtaAGTCTGATTTTGCCCCCTCTGACGTAATCTTT
TTAGCATATATGGCGAAAATTATGATGTAACTGCTCCTTATATGGTAAAA
AGATTGCGTCAGAGGGGGCAAAATCAGACTTACGCTTATCATGAATACAA
GTGTCCGTCTTTTAGAGATGTCCGCATATTATAGAGAAATGAACTAAAAT
CAGTTGTATTAGTCCTTTCGTTCCTAGGAATAGTGTCTGCAATACTTAAA
TATCTTTTGcgtatcttaaaattttatcattttatcgaAGTAGTATATTT
TTCCAAAGCAATTGGATTGTGAAAGCtaaaaaattgcctaaaaataTTTG
TCACTATATGTAGCCTGTTGCGAAATGAttgcagtgccgtaggaagcatt
tttgtttttgagggGGATAAATTtcagtgacaccgcgagggccaaccatg
gtttgtcCCGAGGGggcgattttgaaaattggagcCTCTAGATGGTCTAA
AAACGCATCAAAATAGCTTAATAGTTGTGatataggaagaaaaaaatatt
attaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGACATTGCCCCTACC
CCCGGTTGCTATGGCACTGGATTGTCAGTGATAATTGCTCCTATGTAGAA
ACCAATTCTTCCGTGTCATCCTGGTTTCTACATTAACTGCTTTTActgga
aatatttttgaactaCTTTAGTACTGCACCGACAAACTCAAGCGTAATTT
ACCTTTGTGTAAATATGTTGCTTTGGGCTATTAAAGGCAGTCGATCGAGG
TTTATAGCCATCTAATATCAGTCCGACTaccgattaaaaaaattgatgat
gttGCAAAACTTTTGCagtttttttaatcaatcaaAATAGAACAATAACA
TCAGTTTATTGTTTATAGCTAACAATGAAAGTGTTACTTTTGTTATCACC
AAATTGCAGTCCAGAAAACTTGCAATGCTTTGGCTTAACATAGAATAACA
AACATTGGAATAAAAGGTCAGTGTTTTTTCAACCTTCTTGCTTTTCACTG
CTGACGCGCTGCTGACTCAGTATATGGAATATTAACCCGATCGATTGCCT
TTAACTTTATGATAAAGAAATAACTGAGaagcttcattttaaaaattaag
aatttatttatttaattataCCTTTGTGTATTTCCATAGGTAAGTGAAAC
CACTTACGTGGCAAACTCTATTACAGTGAAATCTCTCGTCCCATAGAAAa
caatataatataaaaagatagctGATAGAAGATGATGTTTTCAAGGCTTT
GGTACTCAGACGAACTCGACGACGAACAGAAAACCAAATATCAAACTTAT
AGAGTGTTAGATTCGTCAACAAAACATCTTGAATTACCACCGCCGACATC
GTTGCCAGGCGACGATGTTTGTGATCAGAATGATTCTACTATCCAAGTAA
CGGTCTACAATCTACCACCACCAACCGGACCAGACAGAGTCCAATTGATC
TTCAAACGCCGATTTGACCAATCCAACCACACGTTCGATATCAAAAAACA
CATCACCAAGGAGTTAGGTATACCTGCAGAAGCGCaaatcattttaaaat
attaccAGCGTTCAAAGTCCTATAGAGCTTCACCGTTGCCAGAGAACATC
AAACTCTCCTATCTGTCGGAAAAAGGAGATCACGAAGAGAGCTTGACGTT
ACTGTTGGCTGTTTGCCAGCAGCGGAGTGAATGCAGGGAAAAGTTTGGAG
AAAAATTAAACGAGTACAACATTGCAGAATTAAGTGGATTAACTGTTAGG
GGTTTTGCCACCAAACATATTATGATGATGCTTGGGACAACGTTTTCTAT
AGACTTGGTCAGACTCAACATTCTTAATCTTACCGGGTTACCAAGCGACG
AGCAATTGATTTACGACCGTAACGGTTTGATAGTGACTTCAGATCTACCG
AAAGATTGTGCGTTTAAAGACCTTTACGTAGCTACTACAAGTTTGAGGCG
TGAGGTGCTTTGTTTCGATTATAGCatcaaagtcttcaagatgttCAAAT
TAACCTTCTTGACTAAAATGGAGGAACTTGAATTAGGGAAGTATCCGACA
ATCGCAGATGTGAAGAACTACTTATTTGACCAGCATCAGATACACAAGCA
TAATCAGTCTTTAATGTTGCAAGGAACGGAGCGCCAAGATTCAGAGGAGA
TATTGGCTTTGGCAGGCCAGGAATGGAGCTGTTCCAACAAGGAGTTGATT
CTTCATTTGTTGGTGATTCGAGGAAAGTTTGACGTACTTTTTGCCCCGTG
TTGGGAATCCGATTTCCAGTCTGGCACGAATTGGTCCCCAATTACTGTTC
AAGATTCCAGCACTGTGGAGGAAGTTAAAACCAAGTTAGCTGAATATTTA
AGAGTGGAAACTCTGTCGTTCAAATTGTCCTTAAAAGACGCTAAAACAAA
AGGAGAGTTTCTACCGAATGATAAaacaatcaaagattttgactCAACAT
TTCCGATACGTTTCAAGTATCACCCGGTTTATACGTATCGGGTTTTCAGT
AACGAATCTGAAATCGGGGAATTGTTAGAAGAGAAAGAAATCATGTTAGA
TACAGAAATCACAGGCTGGAGTCTTGTAAAAACCATCTTGAAAAAATACA
GCCGGACCAAGAAAGACATCAGGCCTGTACCGGTTGGTAAAGCAGCTAGG
TACACGTCACGGTTTCGGTATCCGGACGATTTGAATCATCATGGGCTGGA
TGAATCTTTGTGGAGGAGATGGGAAGAAGGCCAATGTGTCCAAGAATTTG
TCATTTACAAAAAGACTAACGACTGTGTGTTAATGTAGAATAGTTATTAT
GAGATGGTCTACACTTGCGTTGTTAACCCTTTGACTCTgcagtgtttttg
aaaaaagtgaaaagtttccacaattttttttacataaaattcaaacttta
aatGGTTGTAGCAGAGCGGAGACCGGGCTTACAGACTGTATAttaaatat
ataatatatacgTGGAATTCCTTTTCCTAAAGAACGGTCTACACTTGCGG
AGTGAAACACTTGCGGTAACTTTGAAATGAAGATTACGTCATGCGTTTGC
ACGACCATGACGTCAGATTAAACCAATAGAGTCGTTATATCTTTTTTTCG
ACCAATGGCGTGACAGAACGATATTAAAAAAATCGTCACGTGATCTGTTC
TATGAGTGCAGACCGGCCTTAAAATGTCGTATGTAATTTATACTTAGAAA
AATGTGTAAAATAGATTTAATTATGTACAGATAATATACTGCCAaagcaa
aatttcttcaaatacTGAAACTTTTGTGGTGTGAGCGTCAAAAGCAGACT
TAATAGCATGAAAAACGTACCTCGCTTGTAAAGCAAACCTGAATATTGAG
TCGCTTAAAATACGATAGATTTCCTAGAGGGTACACCAAAATATGGGGGA
AATGATTGTAACTTTTTGCTgggaaaattgggaaaatgcGGAATTacggg
aaaattttaaaatctcttGCATAATCAAgattgttgtaaaattttcccgC
AATTCCgaattttcccgatttttccaGCAAAAATTACCGATTTTAGGAAA
TATTTACCACTgtaattttcccgattttttcgatttttcccCCAATGTTC
TGACCAAAAAGATTACAGGTGGTTAGGATGGGAATTAATagtacacaata
gacagctgcAGGCTTTTAGGATTTCCTCTTGGTCTATAGGTTTTCCTACG
TTTTTTTTAGCCAAAGCGCATATCCCGAAGAGAAGGAGTTTACGCTCTGA
ACGAAGAAGATATGACGTAGGACTTAACTCTTCTTAAAGTGGCTATTTTC
TCTCAGGGAGAAATTccgtcaaaaaaattttttttctttacttctTAGAT
GTCCGAAAACAGTAGAGAATTTTGTCACTCATTGTCGAAATGGATATTAC
AACGGACACGTCTTTCATCGAATCATTAAACAGTTCATGTTGCAAACGGG
TGACCCTCTAGGTAAGTGAGTCTCGATTATTAGAAGATTTCCTTTACAAA
ATATTATTAATAAAACTTACTGAACAAATGAGTCAAACACAACATAAACA
GTTCATGTTGTAAACGGGTGACTCTCCACGTAGGCGAGTCTCGATTATTT
CCTTTACAAAATCGTATAAAGACTTACTGAACAAATGAGGCAAACAGACA
CAACATAAGTTTCCATCGAATCTCGAATGTATGATGCCTTGAATGCTTCG
AAGTCGTGAGTCATTTTTGGCGTGTTCTCGATTACAGATGTTGAAAGTTT
TTGTATAAACGAGGCTGGGATTGTCAATGGCATATCCTAGAATCGGATAT
GGCATATAATTCATCTGTCAAATTGAGACCATGGCGTTCTTTAGTACAAA
AGTCTCTAGAAATCGCTTGAAtaaaagagagaaattttttgtCTCGATGC
TTCGTTCTCCTAACTAGTTTAAGGCACTTTAAAGACGGAAAACTTGAATG
GCCAAATTGTTGGCAGCTCCACAACCTCGTGGTCAAACTTTTTGGCGCCA
GAAAATCCATTACGTATTCTTCCATATATGGAAACATCCGGCTTTTTGGG
TTGTTTCCGTAAAATGATTTGCGTAATGGATTTCTTTCATGACCAGAAAG
TTCTGATCAGTTAAGGCCTTACTTATACAAATCAACCAAAACGCTAGACT
TGAAAACAAGTCTGTTATAAAACACGTTATAATTAGGAAAAACTTCAATC
GGTAAAAATATTACGCTCACGTGAGGaggaaaaacaacaaatttgacCAT
TACGTTTCGATTGCTTTATGTATGTTGCTGGTCTCATTAAACGAATAGTT
AACTAAGTCTATCAAAATGCCAGAAATTAATTTCGGCCGATAGGTTCTTG
AGCCTGTACCAGACGATCTTGTATTTTCCTTGCACACAATGATAAAAAGA
ACTGTAGATAGTTCTAGTACAGGCTAATGGAAACTGACTATTATTCCGAA
TGAAATATTTTCCAATGATTTTTAAACATCTTACAGGTGACGGTACGGGT
GGAGAAAGTATTTGGGGCGGCGAATTCGAAGACGAATTTCATCACACCCT
TCGCCATGATCGCCCCTACACATTGAGCATGGCAAACGCAGGCCCGAATA
CCAATGGCAGTCAATTCTTTATCACCGTTGTCCCCACTGtaagttctttt
tcttttggaaatcctttttaaatttcgccATATGCATCTGCGATTTTAGA
ATATATATCAGCCCCAAGATGAGTAATAGAAAGCCGTATGCGGTATCGTT
TTTCTAACTAACTATCCGAAGTTTCTAACTAACTATCCGGTACTAAAGTC
TAAAGTCTGTTGGAAAAATATTGTCTGTGAAACTGGTTAAAACCGTTAAT
ATGTAGAAACCAGGATAGGAAGAAAGAAGCAAAAagtaagtaattgataa
tgtccTGGTTTCTACATGGAAGAAATTTACACTGACAATATTTTTGCAAC
AGATGTAACAGGTGTAATAGATTACGTAATGGATATcataattttcaggt
tttaaaTATGTACTCTCAGGTGCCGAATAAACGGAGGGGGCAaaataaat
ggggggggggggttggaaaatttcaattttttttaataaacggggggggg
gtttggaaaaattcaattttttttaataaacggggggggggtttggaaaa
attcaattttttttaataaacggggggggggtttggaaaaattcaatttt
ttttaataaacggggggggggtttggaaaaattcaattttttttaataaa
cggggggggggtttggaaaaattcaattttttttaataaacggggggggt
cgaaaaaaagggggggggggtttggaaaatttcaattttttttaataaac
gggggtggTCGAAATAAACGAGGGGTTGGAATCTCAACTgttaaaaacac
tgaaaacagGCTAAAAACAGGGTTTtaatttaacagcaaaataagagact
taGCTTTGGTACTTCAGAAACTttgtcaaaaattaataaacggtaGGGTC
CTAACAAGGTCCTGGGGAGGtcctggggggggggttggaaaaactTTATG
AACGTCCCGTTTATTCGGCACCTGTTTGGACAATAAACGTACGTAAGAGG
TTACACAAAAGAATATTTAGGACGTTAGACGCGTGTATGGCGGCCTGCAC
ATAGATTTTCGTTAATAAATTTTGTTTAGACGAATTATGTAGAGGCCGAC
AAAAACGCGTTTagcgtttaaaaaaaatttaaaacttttttttctcaaat
tttagccCTGGCTGGACAATAAGCATACAGTGTTCGGACGTGTCGTCAAA
GGGATGGATATCTGCCAACAGATGAGCATGGTGAAAACATACGCCAGAAA
CGATAAACCgtacgatgaaatcaaaattgtaaaCATGGTTGTTAAATAGC
GCCAGATCTCTCATGACTGACTCATCGTAAATCGTCTGTCGATTTAGTTT
TAGATCACGATTAACCATTACCTAaccttttatacggaaacatcCCAAAA
AACCGGGTGTTTGCCACCAGTTTTTGAATTTGTAACAATAACACTTACTC
TTTTGTGCCTAATTGTAGGGGGT Coding sequence (CDS) from alignment at scaffold_104:42105..51177+ >TCONS_00045935 ID=TCONS_00045935|Name=TCONS_00045935|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_104:42105..51177+ (Clytia hemisphaerica)
GGTGATATACATTTCAAGCTGTTTCCCAAAGAATGTCCGAAAACAGTAGA
GAATTTTGTCACTCATTGTCGAAATGGATATTACAACGGACACGTCTTTC
ATCGAATCATTAAACAGTTCATGTTGCAAACGGGTGACCCTCTAGGTGAC
GGTACGGGTGGAGAAAGTATTTGGGGCGGCGAATTCGAAGACGAATTTCA
TCACACCCTTCGCCATGATCGCCCCTACACATTGAGCATGGCAAACGCAG
GCCCGAATACCAATGGCAGTCAATTCTTTATCACCGTTGTCCCCACTccC
TGGCTGGACAATAAGCATACAGTGTTCGGACGTGTCGTCAAAGGGATGGA
TATCTGCCAACAGATGAGCATGGTGAAAACATACGCCAGAAACGATAAAC
CgtacgatgaaatcaaaattgtaaaCATGGTTGTTAAATAGGGTGATATA
CATTTCAAGCTGTTTCCCAAAGAATGTCCGAAAACAGTAGAGAATTTTGT
CACTCATTGTCGAAATGGATATTACAACGGACACGTCTTTCATCGAATCA
TTAAACAGTTCATGTTGCAAACGGGTGACCCTCTAGGTGACGGTACGGGT
GGAGAAAGTATTTGGGGCGGCGAATTCGAAGACGAATTTCATCACACCCT
TCGCCATGATCGCCCCTACACATTGAGCATGGCAAACGCAGGCCCGAATA
CCAATGGCAGTCAATTCTTTATCACCGTTGTCCCCACTccCTGGCTGGAC
AATAAGCATACAGTGTTCGGACGTGTCGTCAAAGGGATGGATATCTGCCA
ACAGATGAGCATGGTGAAAACATACGCCAGAAACGATAAACCgtacgatg
aaatcaaaattgtaaaCATGGTTGTTAAATAGGGTGATATACATTTCAAG
CTGTTTCCCAAAGAATGTCCGAAAACAGTAGAGAATTTTGTCACTCATTG
TCGAAATGGATATTACAACGGACACGTCTTTCATCGAATCATTAAACAGT
TCATGTTGCAAACGGGTGACCCTCTAGGTGACGGTACGGGTGGAGAAAGT
ATTTGGGGCGGCGAATTCGAAGACGAATTTCATCACACCCTTCGCCATGA
TCGCCCCTACACATTGAGCATGGCAAACGCAGGCCCGAATACCAATGGCA
GTCAATTCTTTATCACCGTTGTCCCCACTccCTGGCTGGACAATAAGCAT
ACAGTGTTCGGACGTGTCGTCAAAGGGATGGATATCTGCCAACAGATGAG
CATGGTGAAAACATACGCCAGAAACGATAAACCgtacgatgaaatcaaaa
ttgtaaaCATGGTTGTTAAATAGGGTGATATACATTTCAAGCTGTTTCCC
AAAGAATGTCCGAAAACAGTAGAGAATTTTGTCACTCATTGTCGAAATGG
ATATTACAACGGACACGTCTTTCATCGAATCATTAAACAGTTCATGTTGC
AAACGGGTGACCCTCTAGGTGACGGTACGGGTGGAGAAAGTATTTGGGGC
GGCGAATTCGAAGACGAATTTCATCACACCCTTCGCCATGATCGCCCCTA
CACATTGAGCATGGCAAACGCAGGCCCGAATACCAATGGCAGTCAATTCT
TTATCACCGTTGTCCCCACTccCTGGCTGGACAATAAGCATACAGTGTTC
GGACGTGTCGTCAAAGGGATGGATATCTGCCAACAGATGAGCATGGTGAA
AACATACGCCAGAAACGATAAACCgtacgatgaaatcaaaattgtaaaCA
TGGTTGTTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045935-exon-scaffold_104-1491911889:42105..42136 | TCONS_00045935-exon-scaffold_104-1491911889:42105..42136 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1510915933:42105..42136 | TCONS_00045935-exon-scaffold_104-1510915933:42105..42136 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1575043694:42105..42136 | TCONS_00045935-exon-scaffold_104-1575043694:42105..42136 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1491911889:48453..48565 | TCONS_00045935-exon-scaffold_104-1491911889:48453..48565 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1510915933:48453..48565 | TCONS_00045935-exon-scaffold_104-1510915933:48453..48565 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1575043694:48453..48565 | TCONS_00045935-exon-scaffold_104-1575043694:48453..48565 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1491911889:49591..49742 | TCONS_00045935-exon-scaffold_104-1491911889:49591..49742 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1510915933:49591..49742 | TCONS_00045935-exon-scaffold_104-1510915933:49591..49742 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1575043694:49591..49742 | TCONS_00045935-exon-scaffold_104-1575043694:49591..49742 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1491911889:50860..51177 | TCONS_00045935-exon-scaffold_104-1491911889:50860..51177 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1510915933:50860..51177 | TCONS_00045935-exon-scaffold_104-1510915933:50860..51177 | Clytia hemisphaerica | exon |
| TCONS_00045935-exon-scaffold_104-1575043694:50860..51177 | TCONS_00045935-exon-scaffold_104-1575043694:50860..51177 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:42105..51177 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002130 | Cyclophilin-type_PPIase_dom |
| IPR024936 | Cyclophilin-type_PPIase |
| IPR029000 | Cyclophilin-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006457 | protein folding |
| GO:0000413 | protein peptidyl-prolyl isomerization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006457 |
protein folding |
| biological_process |
GO:0000413 |
protein peptidyl-prolyl isomerization |
| molecular_function |
GO:0003755 |
peptidyl-prolyl cis-trans isomerase activity |
Blast
BLAST of TCONS_00045935 vs. Swiss-Prot (Human)
Match: PPWD1 (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 3.199e-79 Identity = 114/146 (78.08%), Postives = 125/146 (85.62%), Query Frame = 1
Query: 1 GDIHFKLFPKECPKTVENFVTHCRNGYYNGHVFHRIIKQFMLQTGDPLGDGTGGESIWGGEFEDEFHHTLRHDRPYTLSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDICQQMSMVKTYARNDKPYDEIKIVNMVVK 438
GDIH KLFP ECPKTVENF H RNGYYNGH FHRIIK FM+QTGDP G G GGESIWGGEFEDEFH TLRHDRPYTLSMANAG NTNGSQFFITVVPTPWLDNKHTVFGRV KGM++ Q++S VK + DKPY+++ I+N+ VK
Sbjct: 501 GDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646
The following BLAST results are available for this feature:
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