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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045936 ID=TCONS_00045936|Name=TCONS_00045936|organism=Clytia hemisphaerica|type=transcript|length=1526bp
TAGCCAAAGTTACGCAgagtcaaaattttgagatttgagCTAGATCTGAG
CAATCAATCAACTCTCTTGCAGGTCCAATGGATAGAATATAACAAGTGAG
AAGCTAAAATGTAGACCAACAATCTCCTGACTGACCTGATCAATGGCTCG
TTTTAAAGTCATCGTCATATTTCTATCTTTTCTTGTGATAATTTGGTTAG
GATATGTTTATATTTATTCAAATGAGAAATTTGGTTATTTGGTATCCAGC
ACTTCGTCTTCAAACACTTACTCaagtaaaatctatcaaaaattgaactt
tGATATTAgtaaaaatgatgttttttccTTTGTTCATATTCAAAAAACTG
GTGGCACAACCATGGAGAAACATCTTGTTATAAATCTGAAAAATGGTAAT
TGTAAGTGTGAGCAATCTAAAAAACCGTCTTGTATGTGTTACCGTAGTGT
TGAAAGTAAGGAAATATGGCTTGTCTGTCGGTATATTCAACCGAAATGGC
CATGTGGCTTGCATCCAGACTACGCATCTTTGGCTACTTGTACTCCAGAT
TTCATAAGGAAGAAACATGGTCAAAAGAATTATAGGTTTCTCTATGGAAC
TTTACTTAGAGAACCTGTGGATAGATATTTGAGTGAGTTCAGACATCGAC
AACGTGGGGCAAGCTGGGAAGGTTCAGCTATCAATTGTAAAGGCAAAAGT
TTTGAGGGTCAAAATCCCAGATGTTATGATGGCGAGATATGGCTTGATTT
GACATTAGAAAAGTTCTTAGCCTGCCCTCATAACCTTGCTGCTAACAGGC
AAACCTGGATGTTGTCAAATGTTTCGGATATATCTTGTAGCGTGAAATCT
TTAATGACAAAAGTAAATTATCAGCAGAGGTTACTGTCAATAGCAAAACA
AACAATCAGTGAAATTGCATTCTTTGGTTTACTCGAGTACCCAAGAGAAT
CtcaatttgtttttgaaaaaacttttggttTAGAATTTGATGAACCTTTT
CAATTATGGGATACAGGTTTTGCTAAAGTATACATAGACGGTGTAAACAA
AGAATTgatagaaaaagtgaaaaagaaaaactccTTGGATGTGGAACTTT
ACAAGTTTGCTAAATtagtattttttgaaagatatCATTACTTTGTTACA
TTGTATGGTCACCCAAAATTTCGAGCTCCCTCAAGCGAAAGTCGATTCAc
attaaaagataaaaagaagaGGAGGCTGAAAGAAAATCTACCAAAATCAA
AAGCAAAGCAAGAGACTTTGAAGCGAAGGATCAAGGCTGAACGAGCCAGA
CAAGCAGAAGAGAACTGACGATTATTTACTgtgatataaattattttttt
atttaaaggtATATTTATTCTAGAAGGAAAgcatagttttttttaaatat
atttttatagtTTCTAACTTTTTCCCTATTATCCAGTATTATCTCAAACT
TGAAAAACTattcttaattttcttattCAAGATTCAACCTGCAGCTATCA
AGAAGCTCTTCCGTCTCAGATTTCTC Run BLAST on NCBI protein sequence of TCONS_00045936-protein >TCONS_00045936-protein ID=TCONS_00045936-protein|Name=TCONS_00045936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MARFKVIVIFLSFLVIIWLGYVYIYSNEKFGYLVSSTSSSNTYSSKIYQK
LNFDISKNDVFSFVHIQKTGGTTMEKHLVINLKNGNCKCEQSKKPSCMCY
RSVESKEIWLVCRYIQPKWPCGLHPDYASLATCTPDFIRKKHGQKNYRFL
YGTLLREPVDRYLSEFRHRQRGASWEGSAINCKGKSFEGQNPRCYDGEIW
LDLTLEKFLACPHNLAANRQTWMLSNVSDISCSVKSLMTKVNYQQRLLSI
AKQTISEIAFFGLLEYPRESQFVFEKTFGLEFDEPFQLWDTGFAKVYIDG
VNKELIEKVKKKNSLDVELYKFAKLVFFERYHYFVTLYGHPKFRAPSSES
RFTLKDKKKRRLKENLPKSKAKQETLKRRIKAERARQAEEN Run BLAST on NCBI transcript from alignment at scaffold_104:83940..98496+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045936 ID=TCONS_00045936|Name=TCONS_00045936|organism=Clytia hemisphaerica|type=transcript|length=14557bp|location=Sequence derived from alignment at scaffold_104:83940..98496+ (Clytia hemisphaerica)
TAGCCAAAGTTACGCAgagtcaaaattttgagatttgagCTAGATCTGAG
CAATCAATCAACTCTCTTGCAGgtaactttaaatttttttgtcatatccA
CTCTTATGCAGTCTTATGACGCATGGAAATATAGGTTATGCTGTACTCCA
TCCCTGTTTGAATTACTAAAATTGTGCcagcagaaatttttttaatgata
aaaaagtCGGCTCTGCTCTGGCGTCTGGGCTGAAAGTGAGAAGTAGTCTA
ATTTGTCTGTTTGTGTTTGTTAGTTATTCAAACAACCACTCTGGCCTCCT
GAAATTCAAGGCAAGCAGCAGCAGACACTGTATGCTCACTTTAGCTGTTC
ACTTTATGATTAGTTCATCAGACCTATTTTGAGACTTCATACAGCAGTCA
GGCAGGTGTGTCAGCAGTCAGAGGAAAGGGAaactgcaattgcggtagtt
ttcaTTTGTGATTGGCCTAAAGGCTTACAAGTACATATAGACAACTTTTG
TAaggatgttgagttttgtttaaagTGACAAAGTGCCATATTGTGATGGA
CTGGttaagggaaagataaaagaggtaagactagcctagtttctaatcct
gatataggagtttaagctagacgtccgcgctcgataggatcgatcatcgg
aacggctcgatgacggaacgatatgtgatcgatggattacttaacgatct
gGATGATCAGTCCTATCAAGCGCAGACGTCTGGTTTAAGCTTAGACTGAA
AGATAACTTATTCTGTCTTGTACTGGCTGGAGTAatacagttaggaacat
ttggcgagttcctgtacgcagccgcaatcaaaaaaattataacNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
aaactttttcaaactttcagcgatgattgatcaaactgttacaatgaaaa
ttatccagcacattttttatcttcttaccttcttcatctttaatgaagca
ctaagtttactgaaagtaagcacataagatattcttataattaatgatat
tcatttaaaCACACTTAGttatgcgctgcggtggagtgcatgacgtaagt
cgcgcggcaactaactcgccttctgttggaagatcatattgggcgttttg
gcgttaccaccctcgacgcagcgagcgcctttgtctttccgcaactcttt
ccaccattttagatggccttaacaatagatccaaaagggcgccataatct
tggaagataatttgttttgctcttcggctttgggaagtagcaacgttttt
ggttgttttcgatggaaaatggtaagaaacttaagtttacaagtgtcatt
tagtttttgctggcttatagaatggcaggatcctggatggtttccctaac
tggtgttgatcaggtatgtttttattctatccaaaCTAATGTTATAAAAG
ACTAAAGAGGCCCTGACTGAATCTGGTggcagaattctattggctgttaa
acaattgttgaaatcatgtgatattattgttttgattggaagtgcgcaaa
tctgattggctaaccttatcatcggcttttttggcacaaagttcaaacca
aatgtaaacaaattaaaactgggtcaaaaataccgtactctcaatgagta
gcttctgGTGGGAATTTTGCTTATGTGGTgcaagtttgaatagagagtat
ggatctccagactactTTCAAGAGTGTCTGAGAGTGTTtctaaaagttaa
cttttatcaggctgggcttaaaaaattgttggtttgccatcacccgaccc
tagattttggaggtgggNtaatagaccttttttcaaagaggccaccctgt
tgaataattatgtagtccagcagaaaaacaatgataaaaccatgcataat
tattacaatatgcatgatatagtaactatgcatggctctatcattgtttt
tatggctggactacataattattcaacatgacgcCCTCTTTGATTCTATT
TGTTATtcaatcaaaactataaagtgaatgcacttacaaacatcaatata
tgTCAAATCTAAGGCCGaccctaaaaatttttttgtttctggtCCACCGG
AAAGTCATGCCGGCGaccgggaaaatttttttttggtcatttttatgatt
tctaataaaaaaaattaggaagaaaaaaatcatctctcTGGCTGTAAGTG
TTGCCCCACATTCagtctttatattttttttctctttcactgaaagaaat
gctattaattacaaaaagctgtactttgtaatttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACTTTAGAGAACG
GATTACCGCGCGCAAATATGCGAGATTTTTCACCATACAAAACGTCTCTG
AATACACCGCTCCGCGGTCGATGAGCAATCAATCTTCTCTCTTGCAGgta
actttaaatttttttgtcatatccACTCTTATGCAGTCTTATGACGCATG
GAAATATAGGTTATGCTGTACTCCATCTCCCTGTTTGAATTACTAAAATT
GTGCcagcagaattttttttaaagggatCCTCCTCCGCACTCCGGTCATT
TTTCAAgtttggctttaaattttcgttttatttcataaaacgtaactagc
cgtattgtataagggttgcgaagcgatccagactccacctcaatttgcaa
gttgctagcaaaataagagactctaaaaatccctcttctaataaagccgc
catagagacagggtcgtaagatccttaatgccccaaacacaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaataaaacaaa
aacaaaaatgtacaaagatggcttgttggttcttcggcagttttgattta
tttcttgacaaattcgacaaatttgattaccttcGTACTTCtttatgagg
cccccccagcggacccaaatttcacgcattcacgcaaaattttttcgcaa
ttcacgcattcacgcaagtttttctcgaaattcacgcaaaacccaatttt
ttgggaaattgggaaaattttcggaaaaaaaccggggaaaatgtcaaaaa
tagaggtcttgcacatttcgctaggttacgtaatttacgtaacttccgcc
attatggagtaaaacgttcgatttgcataaaaaagtatgacaaggctgta
ctcgagatattattcgaccggatctggtcatgccattgagaaaaacttaa
ctcagtagtgatttttcctgtagacctgactataaaacaccgtgtttggt
tgcgtcataagaagcccccaaatagaaagcgttacgtaatttttcaactt
taatcacttgccatcacgcaaaatatttgattcttctaacttgtcacgat
cgtttggaaaaggtgaagcttctgcagttaatgtattgcgatagtaagtg
aaaagatatgcgccgcaggggaatttttgtacaaaaaatagcttaaacat
tatcaaaaataggtcaaacaaactcgagtatgacaccatgatgcttagct
caggggtagggaggcgcaaccatggtttacgcagagagaaaatttttgca
tttctgtcactcgcgtttggctaaaaatgctctctttaacgccattgaaa
aagaatgtagtctaaatttgTTAGAGGaaaggtacgatcgcttgatagct
tgtaaaatgaggtaaaagaatgaacatttgttgcgagcgaagctatcaaa
aagaagtaaaaagaaagcttttaatcagggctcgcgaattaattGGAGGA
GGGAGGCCggaggggccgaaaacatagtgactagggaggcgcaaccatgc
tttgcgccgacaggagaaaatttctattttaaccctctgatgtgcttaaa
tacgactccatttcagactaattttgccaagaaatcaggttattaaaagt
ctacatcatgggtaaaaatttctttgaaacaagtttctttttatttgcaa
accaaaaacgtggtgaagtcatggccgcctcctgcccCCAGTGACTCTGG
CCCTggctggccctggccctggTCCTGGAtcatcatgcataaccatggtt
ttatcttaaacaaacactttcaagggggcaaattagagttatttaagatt
cgagggccaatacatgtttggcccgaccgaaaaaatctggaaatttatgg
tgtctagattgctagaaagcgcatctaaatcatgattcgttttataaaat
agagaatttgaaagttgctgatttttttgtacaccttcacctggcatccc
ttgaatttagaataggtgcgcaccttggggttttctacaaactgtgaaaa
ggaaaaatttacgtgttcacgcaaaaaacagggcagattcacgcattcac
gcaatagaagtatggattttcacgttcacgcaagttttttcaattcacgc
attcacgcaattttttctcgattttcacgcattcacgcaaccaaaaaagc
ccattcacgcattcacgcaaaccgctgggggggccccctttatcatagaa
tatccacttggttttgcaaggtaagtttcgttcactaaaagagcactcct
cccgcccgcgcgacttgcaaaaacctctcattgaaaatcaatgagaggtt
tttgNatatagcaaattttatagcaaattttcgcttgggatagaagttaa
aggtacgtgcacaatatagcaaaactgcttcgctcataaattcgcttcgc
aaaaatctCTTATAGAGCcataaatgaaattttaaaacaaatattcatga
aatgaaaaaaacaaaatgaaatctaTTGATTATCTTTCACTGCCATTCTG
GAAAACTTTGTAGAGCGTTCGATAGTTTTGGAACTTCCTTTTTCCATCTA
CGACTCGACTCTGTGTGTTAGCATCGAACAGCAATGTCTCGAAGGAAATC
AAATGATTTCTCCTTGGGAGAATTTGTGATAGGCAATCTTGAATCATCCT
ACCAACTTTCCCTGATTGAGCGTTTGCTTCTTTTCCCTATTGATATTAAG
GTTGTGGTCTAAGGCAGCAAGCATCATACCACATTCCATTTTATCCTGCT
CGTAAAAGATAGATTTGGGCAGGTACCTTATCTTCAGTGCACGGAGAACC
TCCAAGTGTGTTGTATAGACGTTTAAATTGACCTTGCGAAGACCTTTTTG
GAATTCCGCGTTAAAGATAATCTTCGTCAAGGCTTCGTGTGATTTAGATC
CTGCCTTTAGCCAATCATACTGATGTGATTTGTCATGGGGTGGTTAACTT
GTGTAGTAGTTTCCTGGAAATTCGTTTATGTCAATAATGTGAACAATCAA
GCTGTTAAACCGCTCTGTCAGCTCTTCTTCGTTTTCGTTGCAATTTCGTA
CCGCCCAATAAAAAGGATTCACTATCATTatgagtaatttgttattcaat
caAAACTATACAaacacttacaaacatcaatatgtcagatctaaggCTGa
ccgtaaaaacttttttgtttccggtccaccgggtgacgagTCATGCCGGC
Ggccgggaaaaaattttttttggtcattttttatgatttctaattaaaaa
aaaattaggaagaaaaaaatcatctctcTGGCTGTAAGTGTTGCCCCACA
TTCtgtcttttttttctctctcacTGAAAGAAATACTATTAATTACAAAA
AGCTGTactaatttttggacctaccccggtggggtggaggtcctataaat
taacccatgttcgttcgttagttagttagtgtgttagttaccagcttttc
tcgagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNagttatttttaaacaatagggatga
cgcgttctttagaaaaagtaataaaatcgtttgtctcaacatttaacgac
caacagagtcatcaaaaaacttgtaaaaactccagcttgtcctgcaaatt
tgggccaaaaaacgggtttctttggactttgtgaaaaattggatcattaa
ttttttctgatttttagcatgaaagtaagatacaatcatagttaaaggat
ggctcaagcagatttttgcaaaaaaatttttttggctcaaaaatcgcact
tttatctataagaaccacttttaataagaatacatcaatgttcttagcca
tattattattattatttttattagtttttttacgatgaaaatgtcatggt
ggagggtaatgatttgagttttctgtaaacacttattatttttttggctg
aaaaacgaatctttatctacaagaatcactatttatgagcatatatcaat
gttattagccaaattgtttttttattattattttttctaacagaagaaaa
tgtcaaggtagagtgcgacggtttgagttttatggaaaccttatttatta
agctgtgcatttttctgatagtggtttttataaagaaaagcgcttaatag
cttttttattcatttttcaaaaatctttttcaatagtgttgatagtttct
ctcaatagatatgctttcattttctttatttttttgtattttgaccagtt
atgtcttatgtgtttcattgttcactgattagtttgataaccaggtaggt
ccataaaagtatcgcttgtttttcTAAGAATCAACTAACTTTTCATTCTA
ATAAATTGATTTAATATGCATAACACTATTTGATCTTTAACGTCCAGAAA
GCATgctaaataaacaaactttttaaaGAGTGTTATATAGGAACGATGTA
ACAGTTTGAATGAGTCATGATTAAAGGTTTTTAAGAAGAAAGTTTCTTCT
CGTTATCTATttggttcttttgaaaaaaaaatgctgtcgggtgacgacga
aaaaaatttcacccggccggtggaccgaaaaacaaaaagttttttagggt
cggcctaacaaaattaataactgtcatcattgacaatagaacaaaggatt
ttctgtcgagagccttgtaaacattccaacaacttccaaaATGATCTGTC
TCGGcaaagtctaccatttttagcgcgagTGAGCTGAGAACGCTTGCAGA
ATGCCCGCAAGCACCCGCGCAGGtgaaaactttaatctgtcaatcatttt
ctcaagcgaagagtacgcaaagtgtttctagctttacgatagtcccgcgg
atcatcagtggatacagtagtattcaattatcattatctcttaattttat
tttcattcctagaacttttgcaaaaaaaaggaaaaatagaaaagatatat
tttttactgctctattcacatactgaatttgaaagatcttctatatagcg
tttttttcttcaaaaaaccgATCTTTGTCCCGCTTTTGagggactttagc
ttaagtgcttgcgtgcagcatagggtacaaatatgcatttcccgtaattt
ttgaagagttaggtctatactgactATTAGAGTATACAGTatactatttt
ttcaaataaggTCTCTCATTGATATGTGCTGATGAGGGGGATTATTAAAC
AGTATAAAAGGCaaccttttgctattttctaTACCATTTTATCTCCTTAG
TTATAATTAGAGTCACAAGCATGTAATGACTTCACATGATAGCCTGATAA
AGATTAATTTCCACACCTTTAATTCTTATCTTACTGTGTTTCTTGTACCT
TCTCTTACCATTTTTTGCCTAGACGATATAACAAACATAGCaagtataag
cagactgtgcctttaattggctgtaaagAATTTCTGCATCAGTAGAAATT
TCTCCAACTTTTAACAATGATAGAACACAAACaaaattaaccagcgcatt
ttttatctttctacttcttcatcttcaatgaagctctcaaagtcaaatag
aattaagatattcttataattgcgatttcgctacggtggagtgcatgaca
taactcgcgcggcaacaaaCACGCCTTCTGTTGGCTGATCATATTGGCCG
TCTGTTGGCTGATCATATTGGCCGTTTTGGCTTTTTGGCGTTTTGgcgtt
ttaaatgttttttaatgttttttaatgtttttgatgGAAGATTGTAAGAA
ACTTAaatttacaagtgtcatttagtttttgctggctgatagaatggTAG
GATCCTGGATGGCTTCCCTAACTGACCTTGTGTTAAtccatagcgtcagc
ctgggtttagattccaggcaaaaattaggtcccccctgagttttaagtcc
ccccaaaaatttatgaattttttgttagcccccaggacctttcaaaaaat
tgatccagtagAAAAggtttttccaatgtaaattgcgttcagttctaaat
ataagataaaatattttgcacactttctataaaaatattgcgccgcaggg
gaaaaattttcagattcattagcttcaatttgagtaattgaagtaCATAG
GTACCCCAAAAAAGTTGATGTACTTACGGCCccctccttttttgggaaaa
atttagggTGTAACTCCCCAACCAGCAGGGGGCTGATGCTATGTAATCCT
GCATACCGAGTTTAAAAGTACACATACTAACATCAGGTTACTACTCCagc
ataaattttttaaatgtaacttcaaataattgatttttcttttacaaaCT
AGCTGCTAAACCTAGGGacaagatttctttttttttcaagaagttTTTCT
CCAGCTGAGTGAGAGGGAGAGAGGACTGTGTGTGGAGGAGTTCTCCTGAA
TTAGCACCCAATAACACTGCAAATCTTGGGATTTGAAATTGACTGAGTCA
ATAGGTCATTGCATTCTTCCAAACAACTATTTTGTTTGCATAATAGTTGG
GATGTCGAAGCTACCGGGTGCGGCAACTGCAGTAACAAAAAcaggatttt
gaaaaaaaccttTCAAATTCACAGGTCtcaaggaagaaaacgttttttta
gcataaatgtttttttccaagttCAATAAAATTCATTCagcttttttttg
caaaaaaagattatCACTATAGCTATATGTACTGTTCCTACAGAACTTGA
AAATGATTACTCACGgtgcactttttcaaacttcttatTCCCGGCACAAC
AAATATTTTTAGCGGCAGATACTAAAATCCAAAGTGCTAGCCACTGGGGA
CATTTATTAGCCTACTGGAAATTTTTTCATTCTCCCTCGCTTCTGAAATT
ACAAACTACTACAACAACAAAAACTGGATTTTCAGGATCTTCAATCCTAC
ATACAAGAaatgcaatctgattggttaaaaagagtacaatatatcttgta
ttttacatgtaaaaatataaattgacaaaaagatgttgttgcattgtagc
ggtagcagcaatctaatgtcactttgctacaaaattGCCCtgtgcttttt
tccaacacaaaaagtgcattttttgggtcaccgataaaccagttatcaga
tcTTCGCTCGTACAATATGGTAATATTTTACTTGTTCCAGATTTTCCTTA
TATACcaggggggggtcttgcagttactccttgacactatgtggagtaac
tgcaattttggacattttctacagacaccaccacccttgcagttattcca
tagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttagtccactggtggagtaactgtttt
cccaaattttggtttatataccaccacggtagtaattgtcatagtgttta
tataataactgcatgaacCCCCCCTGTAtatacggaaaaatctcggaact
cgtaaaatatttctcatattgtatgtactcgcaactgtccaataactatt
acgtatttctttgtatttgtttgAAAAGCTCTTGATTCTTGATAATGGTT
ACAATGgttaattcttttcaaaactctTCCTAATCTGGAAATCTTGTAAC
CTTGTTTTTCAGCCCGGTCAATCAAAGCTGCAGTCACTAATAAAGTTAGA
TGTacttaaaaaaatttgacttaTTATGAGGATTTCTTCACCATCAACTG
GTCTTAAAACCATAATGGAAAATCTCAATTTTCAACtgttttctccattt
ttaaattgaaatcaaCCTGGAATACTTTTATTAAAGTACAGTACTTTTCA
AAATCTGGCACTtattttaaatctaaatttgtcaaaactaACTCTGAAGT
TCATTTTCGGGCAAAGGTAAGCTaaaactaatttgaccaatacTAATATT
GATATTAGAACCATCTAAATCCTTTCAATCAGCTagattgaacaaaaaaa
gaaaagtactttaatgataagcacttttctattttgaagcCCTTAGCTTC
ATATTTAAAGGCCAAAGaacttaaatattttttgtcatttgactccacat
ttgaaaatttttagttcAAACCCTCTTAAGCCTCTAAGTCTAAATCCTTT
ACTTCAGAATATCTTTGACCAGAATGaccaaaaatatttaagtttttttg
atgaTGGACTGACGGACATTATAGTTGATGAAAAGTTTAGTATGGAGGGG
CTTTCTTAACCCATAATTGCTTTCAGatatatattttcaaaggtTCAGAA
GGAAACTGGAAGAAGTGCTTTgtgaaaaatctttgtttttttttataaat
tcaagaattcacaatttttttcactaaattttgacaaaagGGAAATGTTG
CAACCTTTCATGTATACAATGAAAAATGTTCTAAGATAGGTCCACTTTGG
CCGATATTATCATTAACATGTTTATTTGccatgaaaagtcattttttgta
acattttAAGTTTGGAGTTAAAGATTATTTTACTATCAATTTCCTAAAAT
CTGAAATTTCAAGCCATTTCATCCTGAGTTAGTTGTGTTGAGCTGACATT
TAAACTAAACTATTCATTTGTCCTTTCATTCAGGTCCAATGGATAAGAAT
ATAACAAGTGAGAAGCTAAAATGTAGACCAACAATCTCCTGACTGACCTG
ATCAATGGCTCGTTTTAAAATCATCGTCATATTTCTATCTTTTCTTGTGA
TAATTTGGTTAGGATATGTTTATATTTATTCAAATGAGAAATTTGGTTAT
TTGGTATCCAGCACTTCGTCTTCAAACACTTACTCaagtaaaatctatca
aaaattgaactttGATATTAgtaaaaatgatgttttttccTTTGTTCATA
TTCAAAAAACTGGTGGCACAACCATGGAGAAACATCTTGTTATAAATCTG
AAAAATGGTAATTGTAAGTGTGAGCAATCTAAAAAACCGTCTTGTATGTG
TTACCGTAGTGTTGAAAGTAAGGAAATATGGCTTGTCTGTCGGTATATTC
AACCGAAATGGCCATGTGGCTTGCATCCAGACTACGCATCTTTGGCTACT
TGTACTCCAGATTTCATAAGGAAGAAACATGGTCAAAAGAATTATAGGTT
TCTCTATGGAACTTTACTTAGAGAACCTGTGGATAGATATTTGAGTGAGT
TCAGACATCGACAACGTGGGGCAAGCTGGGAAGGTTCAGCTATCAATTGT
AAAGGCAAAAGTTTTGAGGGTCAAAATCCCAGATGTTATGATGGCGAGAT
ATGGCTTGATTTGACATTAGAAAAGTTCTTAGCCTGCCCTCATAACCTTG
CTGCTAACAGGCAAACCTGGATGTTGTCAAATGTTTCGGATATATCTTGT
AGTGTGAAATCTTTAATGACAAAAGTAAATTATCAGCAGAGGTTACTGTC
GAGNATCAATTTCCTAAAATCTGAAATTTCAAGCCATTTCATCCTGAGTT
AGTTGTGTTGAGCTGACATTTAAACTAAACTATTCATTTGTCCTTTTATT
CAGGTCCAATGGATAGAATATAACAAGTGAGAAGCTAAAATGTAGACCAA
CAATCTCCTGACTGACCTGATCAATGGCTCGTTTTAAAGTCATCGTCATA
TTTCTATCTTTTCTTGTGATAATTTGGTTAGGATATGTTTATATTTATTC
AAATGAGAAATTTGGTTATTTGGTATCCAGCACTTCGTCTTCAAACACTT
ACTCaagtaaaatctatcaaaaattgaactttGATATTAgtaaaaatgat
gttttttccTTTGTTCATATTCAAAAAACTGGTGGCACAACCATGGAGAA
ACATCTTGTTATAAATCTGAAAAATGGTAATTGTAAGTGTGAGCAATCTA
AAAAACCGTCTTGTATGTGTTACCGTAGTGTTGAAAGTAAGGAAATATGG
CTTGTCTGTCGGTATATTCAACCGAAATGGCCATGTGGCTTGCATCCAGA
CTACGCATCTTTGGCTACTTGTACTCCAGATTTCATAAGGAAGAAACATG
GTCAAAAGAATTATAGGTTTCTCTATGGAACTTTACTTAGAGAACCTGTG
GATAGATATTTGAGTGAGTTCAGACATCGACAACGTGGGGCAAGCTGGGA
AGGTTCAGCTATCAATTGTAAAGGCAAAAGTTTTGAGGGTCAAAATCCCA
GATGTTATGATGGCGAGATATGGCTTGATTTGACATTAGAAAAGTTCTTA
GCCTGCCCTCATAACCTTGCTGCTAACAGGCAAACCTGGATGTTGTCAAA
TGTTTCGGATATATCTTGTAGCGTGAAATCTTTAATGACAAAAGTAAATT
ATCAGCAGAGGTTACTGTCAATAGCAAAACAAACAATCAGTGAAATTGCA
TTCTTTGGTTTACTCGAGTACCCAAGAGAATCtcaatttgtttttgaaaa
aacttttggttTAGAATTTGATGAACCTTTTCAATTATGGGATACAGGTT
TTGCTAAAGTATACATAGACGGTGTAAACAAAGAATTgatagaaaaagtg
aaaaagaaaaactccTTGGATGTGGAACTTTACAAGTTTGCTAAATtagt
attttttgaaagatatCATTACTTTGTTACATTGTATGGTCACCCAAAAT
TTCGAGCTCCCTCAAGCGAAAGTCGATTCAcattaaaagataaaaagaag
aGGAGGCTGAAAGAAAATCTACCAAAATCAAAAGCAAAGCAAGAGACTTT
GAAGCGAAGGATCAAGGCTGAACGAGCCAGACAAGCAGAAGAGAACTGAC
GATTATTTACTgtgatataaattatttttttatttaaaggtATATTTATT
CTAGAAGGAAAgcatagttttttttaaatatatttttatagtTTCTAACT
TTTTCCCTATTATCCAGTATTATCTCAAACTTGAAAAACTattcttaatt
ttcttattCAAGATTCAACCTGCAGCTATCAAGAAGCTCTTCCGTCTCAG
ATTTCTC Coding sequence (CDS) from alignment at scaffold_104:83940..98496+ >TCONS_00045936 ID=TCONS_00045936|Name=TCONS_00045936|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_104:83940..98496+ (Clytia hemisphaerica)
ATGGCTCGTTTTAAAGTCATCGTCATATTTCTATCTTTTCTTGTGATAAT
TTGGTTAGGATATGTTTATATTTATTCAAATGAGAAATTTGGTTATTTGG
TATCCAGCACTTCGTCTTCAAACACTTACTCaagtaaaatctatcaaaaa
ttgaactttGATATTAgtaaaaatgatgttttttccTTTGTTCATATTCA
AAAAACTGGTGGCACAACCATGGAGAAACATCTTGTTATAAATCTGAAAA
ATGGTAATTGTAAGTGTGAGCAATCTAAAAAACCGTCTTGTATGTGTTAC
CGTAGTGTTGAAAGTAAGGAAATATGGCTTGTCTGTCGGTATATTCAACC
GAAATGGCCATGTGGCTTGCATCCAGACTACGCATCTTTGGCTACTTGTA
CTCCAGATTTCATAAGGAAGAAACATGGTCAAAAGAATTATAGGTTTCTC
TATGGAACTTTACTTAGAGAACCTGTGGATAGATATTTGAGTGAGTTCAG
ACATCGACAACGTGGGGCAAGCTGGGAAGGTTCAGCTATCAATTGTAAAG
GCAAAAGTTTTGAGGGTCAAAATCCCAGATGTTATGATGGCGAGATATGG
CTTGATTTGACATTAGAAAAGTTCTTAGCCTGCCCTCATAACCTTGCTGC
TAACAGGCAAACCTGGATGTTGTCAAATGTTTCGGATATATCTTGTAGCG
TGAAATCTTTAATGACAAAAGTAAATTATCAGCAGAGGTTACTGTCAATA
GCAAAACAAACAATCAGTGAAATTGCATTCTTTGGTTTACTCGAGTACCC
AAGAGAATCtcaatttgtttttgaaaaaacttttggttTAGAATTTGATG
AACCTTTTCAATTATGGGATACAGGTTTTGCTAAAGTATACATAGACGGT
GTAAACAAAGAATTgatagaaaaagtgaaaaagaaaaactccTTGGATGT
GGAACTTTACAAGTTTGCTAAATtagtattttttgaaagatatCATTACT
TTGTTACATTGTATGGTCACCCAAAATTTCGAGCTCCCTCAAGCGAAAGT
CGATTCAcattaaaagataaaaagaagaGGAGGCTGAAAGAAAATCTACC
AAAATCAAAAGCAAAGCAAGAGACTTTGAAGCGAAGGATCAAGGCTGAAC
GAGCCAGACAAGCAGAAGAGAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045936-exon-scaffold_104-1491911889:83940..84011 | TCONS_00045936-exon-scaffold_104-1491911889:83940..84011 | Clytia hemisphaerica | exon |
| TCONS_00045936-exon-scaffold_104-1510915933:83940..84011 | TCONS_00045936-exon-scaffold_104-1510915933:83940..84011 | Clytia hemisphaerica | exon |
| TCONS_00045936-exon-scaffold_104-1575043694:83940..84011 | TCONS_00045936-exon-scaffold_104-1575043694:83940..84011 | Clytia hemisphaerica | exon |
| TCONS_00045936-exon-scaffold_104-1491911889:97043..98496 | TCONS_00045936-exon-scaffold_104-1491911889:97043..98496 | Clytia hemisphaerica | exon |
| TCONS_00045936-exon-scaffold_104-1510915933:97043..98496 | TCONS_00045936-exon-scaffold_104-1510915933:97043..98496 | Clytia hemisphaerica | exon |
| TCONS_00045936-exon-scaffold_104-1575043694:97043..98496 | TCONS_00045936-exon-scaffold_104-1575043694:97043..98496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:83940..98496 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005331 | Sulfotransferase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008146 | sulfotransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0008146 |
sulfotransferase activity |
Blast
BLAST of TCONS_00045936 vs. Swiss-Prot (Human)
Match: H6ST1 (Heparan-sulfate 6-O-sulfotransferase 1 OS=Homo sapiens GN=HS6ST1 PE=1 SV=5) HSP 1 Score: 226.098 bits (575), Expect = 1.687e-67 Identity = 129/333 (38.74%), Postives = 193/333 (57.96%), Query Frame = 2
Query: 278 KIYQKLNFDISKNDVFSFVHIQKTGGTTMEKHLVINLK-NGNCKCEQSKKPSCMCYRSVESKEIWLVCRYIQPKWPCGLHPDYASLATCTPDFIRKKHG---QKNYRFLYGTLLREPVDRYLSEFRHRQRGASWEGSAINCKGKSFEGQN-PRCYDGEIWLDLTLEKFLACPHNLAANRQTWMLSNVSDISCSVKSLMTKVNYQQRLLSIAKQTISEIAFFGLLEYPRESQFVFEKTFGLEFDEPFQLWDTGFAKVYIDGVNKELIEKVKKKNSLDVELYKFAKLVFFERYHYFVTLYGHPKFRAPSSESRFTLKDKKKRRLKENLPKSKAKQ 1261
++ + L FD+ +DV F+HIQKTGGTT +HLV N++ C C +K C CYR +E WL R+ W CGLH D+ L C P + ++ + +F Y TLLR+PV RYLSE+RH QRGA+W+ S C G++ + P CY+G W TL++F+ CP+NLA NRQ ML+++S + C S + + Q LL AK+ + +AFFGL E+ R++Q++FE+TF L+F PF +++ A V+++ I ++++ N LD++LY +AK +F +RY Y L + R S E R R KE LP+ A +
Sbjct: 74 ELERSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQK-KCTCYRP-NRRETWLFSRF-STGWSCGLHADWTELTNCVPGVLDRRDSAALRTPRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQEFMDCPYNLANNRQVRMLADLSLVGCYNLSFIPEGKRAQLLLESAKKNLRGMAFFGLTEFQRKTQYLFERTFNLKFIRPFMQYNSTRAGGV--EVDEDTIRRIEELNDLDMQLYDYAKDLFQQRYQYKRQLERREQ-RLRSREERLL------HRAKEALPREDADE 394
The following BLAST results are available for this feature:
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