TCONS_00045942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045942
Unique NameTCONS_00045942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045942 ID=TCONS_00045942|Name=TCONS_00045942|organism=Clytia hemisphaerica|type=transcript|length=1938bp
AGTCGGGCTCAACCTGAACGCCGTACACTATTCATAATACACTCCTTGAT
GTCTACATACATTAAGGTTAAAACCGACTGAATTGGTCaagccaaaaaaa
acaaaactgatGATGTGTTTGGGAAACTGGATGACTGTTTCGCTTTGACG
TTTTTGTTTCAACCATGTCATGAGATTGTTTACCAATTATTGAGTTGTAA
TGTCACTTTTGAAGTACGTAAACAGCTGTGGACTTAATGTAATCGGATGC
TGCTTCCGTAGTCACAGAGGATTCATTCCGGGACCAGTTTCGCAAAAAGA
TGATGGCTTGAGTACTGAACCACATGTCAGTTTAGACACATCATTCATGG
gGAACGAATGTGTGATTGTAAAGAATGGGACTAGGATATGTGGTACAGGA
GCTGCTCTTGCCACAGCTGATGTTGTCCAAGATAAAtgttattttgaaat
gaaagttcAATCAGATGGTATCTGGTCTGTAGGATTAGCATCTTTGAATT
GTGATTTGAACAAATTACCACTCGGGAATGATGGGAATAGTTGGGTATTA
TCTTATGATGGTGCTTTAAGACATAACAAAGTTTCATTGGACAATATCGA
TCTCTCTGTGGCGGAAGGGCTGCAGTTTTGATCATGTCGAATTGAACTTT
TTTCACAATGGAAAGAACTTACATTGTCCCATCACTAAGATACGCGGCAC
TGTTCGACCCGTCATATCAGTGGATGATGGCTGTATCATAGATGTATTTT
TCGATAATTTCGTTTACCCACCGCCTCCTGGATTTTCGAAACTCATGGTT
GAAAAAGATCTGATATAGATTAAACTATTCGACTTGTTCAAGTTGATTCT
GCTACGAAACGTAGAAAGAAGAATGTAGGACATTGAAGAACCAATACCCA
TAATGCCATGGTTTTCATCTTCAAAGacgtaaaacgttcgatgcgtTTCG
CACTTCAATGGAAAAAACAGACATTAAGGAAACAAGCTTACTTCAATCGG
ATCAATTTTCGCAAGAGATTTGATTTTGCGAGCCAGAGAATTCGCTggat
gaaaatttttctggattcACTTTTGCAAATCggcattttaaaaatttttc
acgtggattaaatttcgcgaatctaAAAAGAGCCTATTTAcagttttgtt
taaaatttcgatTACGAAAGTTTCGAGTTGATTTACTTTTGCAAGTCAGC
AATCTCACTTGGCGAAAATgacgaaaattcgcgaaaatgcGAAATCAAAT
TTCGCGtaaaattaatccaattaaagtataGTATAGTTTTTTGACTTAGT
TGAATcgcagaagaaaaagaagaatcgTCGTTCGGttttacatcaaaaac
aaaatatcaaatgaTCCTCGTGCCTTTGGGGTAACGTTGCTTTGCGCTCA
AATAAATATGATGAAAgtgtttgaaaattgaatttcgtgCTTGTATCATA
TCATGTTGTTTAGTTTTTCAGCTAATTATTATTTTGCTTTTTTACGCTTT
TTCAATTTAGGGTCGCTCGGACCTCATAGAACAACAATTTATGTTGAGCT
TGAAACAAACAGTGTTTATCTACTAGACTAGGCTTTATTGGCCCGTGGCT
TGAGATATTTGGTTTAGTGTCACCCAGTTTCAAAGATGCCATGGAAACTC
TTTGACTCGGACCTCTATAAGTTGTTTGCCTCCGAacttgaacaagtttt
atggtcccttcagttaacaataccttataaaccttactccataactcaaa
agGATTCGTGCTCCCCGCCGTGTATGTTTTCGTAGTGAGTCTTTCGATTT
TAGGgttcaaattaattttgattttgcaatgcaatatatattatttttta
taatttatgaTAAATATCCTTCTTTTTGTATACGATGTCTTTTGTTTAAG
GAAGATTTTTAATGGGTCAAAGATGACTTCATTACATA
Run BLAST on NCBI

protein sequence of TCONS_00045942-protein

>TCONS_00045942-protein ID=TCONS_00045942-protein|Name=TCONS_00045942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MSLLKYVNSCGLNVIGCCFRSHRGFIPGPVSQKDDGLSTEPHVSLDTSFM
GNECVIVKNGTRICGTGAALATADVVQDKCYFEMKVQSDGIWSVGLASLN
CDLNKLPLGNDGNSWVLSYDGALRHNKVSLDNIDLSVAEGLQF
Run BLAST on NCBI

transcript from alignment at scaffold_104:166300..189442+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045942 ID=TCONS_00045942|Name=TCONS_00045942|organism=Clytia hemisphaerica|type=transcript|length=23143bp|location=Sequence derived from alignment at scaffold_104:166300..189442+ (Clytia hemisphaerica)
AGTCGGGCTCAACCTGAACGCCGTACACTATTCATAATACACTCCTTGAT
GTCTACATACATTAAGGTTAAAACCGACTGAATTGGTCaagccaaaaaaa
acaaaactgatGATGTGTTTGGGAAACTGGATGACTGTTTCGCTTTGACG
TTTTTGTTTCAACCATGTCATGAGATTGTTTACCAATTATTGAGTTGTAA
TGTCACTTTTGAAGTACGTAAACAGCTGTGGACTTAATGTAATCGGATGC
TGCTTCCGTAGTCACAGAGGATTCATTCCGGGACCAGTTTCGCAAAAAGA
TGATGGCTTGAGTACTGAACCACATGTCAGTTTAGACACATCATTCATGG
GTATGTATTTTTTAGCTATAACTGCCAAACATTAGCTCAACATTACCTTT
AACTTAGCAGAAGTTCctttcagttagggaaaccatccaggatcctgcca
ttgacacttgtaaacttaagtttcttaccattttccatcgaaaacaacca
aaaacaatgctacttcccaaagccggagaacaaaacaaattatcttccaa
gattatggtgcccttttggatctatatTGTTAAGGCCATATAAAATGGTA
GAAAGAGTTGTGGAAAGACAAAGGCCCCGactgcttcgagggtggtaacg
ccaaaacgcccaatatgatcttccaacagaaggcaagTTAGTTGCCACGC
GAGTTACGTTATGCACTCCActgtagtaagtaagtaagtaactatttatt
taccatttgaaCACTAAATAATACACAGGACAGTATccacaaaataaaaa
ggaaggagaccgccttatagcCTAGTAGACTAATCATaaagatgcggcca
cctaagtcagtgaagtcaagtttgaagatattctttattagaaaaatggt
taaaagcagtcaaaacccAATTTACccggttggttcgaaacgcaggacac
aggacccaggaggcaggacacaggacacaggacagtgctgacaggtcagc
tttaattGCTGTAAAAGACAAAGAANNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNCcccaacaggaaaatagctatttcacaatcgc
tatatcatatctcattatatctcctgcatcaccttaggtatgataacaaa
aattgactaaaatagcGCCAaaggtttgtattttattaatatatcaatat
tttcattccctatctcgtatttttgatgaaaacgacgtcactattttcat
atctctaaaacagctcccttggagcatttaatgttttcaaaatatataaa
tctaTATCTACTTGCACCatcagcatcctattgagcatgaaaaaacattt
tgttgtaaaCTGATGTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNGcttgtcatttaaaaatctttt
aaatagcgtattttgtataatatataattttccattgcgtataatgtttt
tagaaacattttataCATTATATGTTACGAGTGTATGTTacaattttccg
gtctgtagtttgtatgacgtgcgtcctgtgtcctgcgtcctgtgtcctgt
ctcctgcgtcctgtctcctgcgtttcgaaccaaccgcaatttaccttacc
tcctgagatgctaatcaaaaatagtgtgacattggaaaaaattgccaaaa
acaactttttgaaataaCTCCCCAGGTATTTTGAATCTAGCCTTCAAATC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNAAATCGATTTGAATCACATTGTTT
GATAAATGCTTTACAGTCATGTTTTTGGATCTGTAAGCCACAATAATGTG
CATTTATAATTACAAAATATAAGGCtctttatatttataaataatcAAAG
AAATACTACAAATAGTTTAAGGCTTGATAGTCAATGGACTTCCAGCCTGT
ATAATTTCTGATTATCTCCCCCGCTGTAAGCCATATTTTTTACTCACAGA
AGGGCAGTAAGCCACGATTTAATACAAAATGTAATGtgtcaataaataaa
taaacattcGGCTATCCATTACTTGGATaatcttaataaaatctttgtcA
AAGATCTATAATGCATTTATATCCATTTTAATAGAGCTTCTTATAGAGTC
CGTAAGCCACCAAAATGTACTTTTAACAACTATATTTTACTTTCTTCCTT
GATATTCAGCCATAAATTGATGGTTTTCCTAATCaaagtgaaagaaaata
ttgaaacaaaaaaatNaattacaaaaacctccaatcactacttctccgcc
atcttgtttcactttaaatgccgtgttttaaaattccttagctacattat
atgtacggaaaaggttttctccgggttttttcaatcccgggattaaacta
cgagggcgGTTCCGCCCGCTTATTTTCCTTTCGGTGTTGAGCCCcgggga
tacttaacaataaaagagattttaaaacTAATGTTGAAATGcgtattttt
tcgataaatttaggcgatactcaacaaaaaatgaggtggttttaaacaaa
tctttgacaaattggcgtttctttctgttctaatatatgcaaatcacgtc
gaaaaaataatatatttccgcctttactttcacttttgctttcGTGTTAC
GCAAATCTGATCGGATGAATAccgctcgctaacaaattctgattggctgt
aagtctttagcttcgggattctgattggatcatttcccgcgCCACCgtta
aattttgattggtttggATGAATACCTcgaaagtaaacaatagtatgtaa
gtattttgcttatcaaaacctaaagatttccagggggttttatttacttt
gcatgacgataattaagcctacaaaacaccgagaaaaaaacccaacatac
aacaggtgtattttgtaatgcaGAATATGATAATGTGAATCTTTATGAAA
TTCTATGTtaggatttttttctcaatgccctgTAACTATGCCCGGtgtac
ccgttgctaagaccttatgttaaaaacgaaagcgattacggcaaaactca
tcaaaaatagcaattttcgtAATAcgtcaaatattgatacttgactgtac
tgtAAGTGCCGATAACATTCgtaaaatttataaattattaaagtatgtta
attttataaattttgtttaGATAAAGATAAAAAGAGAAAGTACTCTGTGT
GTAGGGAGGTGTGCTCAGTATTCCCCAAGACAGTGAGTAAAGGCAAGAGA
TTTGACAATGCTCAGAGTAATATTTGGATAAGATCGCTGAATACTATTCC
ATTGTGTTATGCATATTTTAGAAAAGGATTTATTACCAAAAGTAATGGTA
TTGTAGGAAGGAACAAAAAGAAGCTTCAATCTTGCTCCTCTGGTGCCTTG
GTTATCTTCACGTTCACCATCAGCATCAAGCTGGACAAAGTTAAAAGAAT
TTAGAAGGTCAAGGGGTAATTCAGAAATATGTGAACAAAAGAAATGTTAA
GGCATGACTAGGTCAAAGACTTTGAGAATTTTAAGATCAGAAAAAAGTGG
AGAAGAAGGGCATTGAAAGTTGTTGAAAGTCATGAGACGTAGGGCTTTCT
TTTGAAGAATAAAAATGGGCTTGGATGTGGTGTTATCAGTAAGACCCCAT
AGTTGACAACCGTATTGAAGATGAGAATAGAATAGAGCATGGTAGATGTT
AACTAAGTTTTTTCTTGAAACGTAGTGCCTGAGCTTAGATATGATACCAT
TAGCTCTGGCGAGTTTTGCTGATAATGAAGTGGTATGGGCTTTCCAGTTG
AGATGTGAGTCAATCAAAACACCGAGATATTTAATATTTGagctttgaaa
agttttcttaCCTCCGATTTTAAGGAAAGGAATAAAAGGAAGATTTTTAC
GAAAATGTCTGAAGATTAAAAATTCAGTCTTCCCAGCATTTACAGTAGGG
ATATCTTGCTGGCTTTGAGCCATGTTTGGAGTGATCTCAGATCACGATTG
ACTCTTGTGCAAATGGAAAGAAGATCATCATTAAAATATAAGAGGTGTGT
ATCATCAGAAAATGGCATTGtgaagatcattaatataaattaaaaataag
agaGGTCCAAGAACAGAGCCTTGTGGAACCCCATGAGGGACTATTTTGAT
AGAAGATTTATTAGACGAGATACAAACAAACTGAGATCGGTTTGATAAAT
ACGATCTGAACCAGTCATTAGCCTTTCCTCTAACCCCATAgtgatttaat
tttgaaataagtaTTGAGTAATCGACAGTATCAAAGGCCTTTTGTAGGTC
TACAAAGACACCACAAGCAAGGTTACCAGCATCAAGAGATTTACGTATGC
GTTCTACAACATTGAGTAAGGTATGGATGGTTGAGTGAGACCTGCAAAAA
CCAAATTGACGCTCAAAAAATACTCTGTGAGAATCTAAAAAGGTAATTAG
CCGGGAGTACATCAGTTTCTCAAGAATTTTCTCCATGTTGGAAAGCAAGG
ATATTGGATGGTAGTTTTTAAACACAGGGATGACTTTTGTAAGTTTAAGC
ATTGTAGGAAAAAAAACAGATTCAAAAGATAGGTTGAAGAGAAAAGACAG
GGGGCCAGAGAGATCAAATCTCAATAAACGGATGATCTTAGGGGAAATGC
TGTTAGGACCAGATGATTTCTTTAGAGATAAGGAATTAATTGTTAATAAT
ACTTCAGCAGAGTTAACACGATCAAGAAAAATAGAATTCCTAATATGGTT
CTTGAGGTAATGGGAAAAGTGACGCTTGGTTGGACCAATTTTAGAGCGAA
CGGTGTCAGCAATAGATGTAAAGAAGTCATTGAAGCCATTGGCAACAATG
TTTGGATCAGAGTTGAGATGACCATTGACACGAATAGATGATGGAGATGA
TTTAGGATCAGAACCAATGAAATTCTCTAATACCTTCCCAGACTTTTAGG
ATATTTGTGGCATGGACGGAAAAAAATGAGAATCAATGATTATTTTTGCT
CTTACGTGTAAGAGTAACTATGAGGTTTTTATATGTTTTATATCTTTGGT
AGTAAAAAGATTTCATGATTGGGTCTTTGGTTTAGAATATTTTCTAGAAT
AAAATTGATTGACGTTGTGAAACTGATTTGATTATTCAAGGGGTGATCCA
TGGTTTAGCCCGAGTTTTTTGTTGCCGTTTTGTCACAATAACAGTTGGAA
CATGTTGATCAATTAGGTTTTAAATTAGTTCataaaaaaagtcttaaaag
cTTGATCAACATCTgctatgttatataatttatttgCCCAGTCAATGTCC
AAAAAGTCTAAAACAAAATTGTCTTGGTTAAAGTTCTTCCAGTCTttctt
aaagattttttcatctTTAGATTTAGGAAAAGGACTGCAGACTAGATGAA
ACTGAGGAAGATGGTCTGAGATGGAATAGAGCAAATTTCCTGAAAAACTA
CGTTtatcagaaattgaaaaaaatattgtcaataaGTGTCATAGAATGGT
CAGTAATACGAGTGGGAAGAAAAATATTGGGTATGAGAAAGTGTGATCCA
AGATTGTTTAGATAAGACAAGATATTTGGGTCAGACGAGGAACTCAGGAG
ATTTTAAAATGTTGAAGTCTCCAAGAAGaagaatttgtttattttctttg
ttaattttattcaaaagtggATCAAGAAGTTTGTGAAAATCATCAAGAGT
AAGATGAGGATATTTGTAAATTGATCCATCGATTGTATTAGTAGTATTTG
GAAGATAGATTTCAGCAAACGTAGATTCAAGAAGAGTTGGACATAGAGTC
GAGATCTCCTCGAGGTTCATAAGAGAGATTTTTTGAGACGTATAACATAG
AGCCACCAACAGAAGCCTCTGTATGTGTGTAAATTGGTTCCTGAAAGTTC
TCAAGATTAAAGTATAAAgaaggttttttgtttttttaaatacgGGTCTC
GGTAATAGCCATCACATCGAAGTTAAAATTGAGTTTAGAAAGGAGATTGG
TTAGGTCATCCAAGTGCAAAGCTATTGAAGCAATATTGAGgtgaagaaat
gaaaaagaaaaaggtgcGTTTTCGCggggaagtttttgaaaatcagaagt
TTTGTAATACTTACAGTCAGCAGCTGTCAAATAATCGAGATCAAGACAGT
TGTTTTGGCAGTGGTCAGAAATGAGGCTGAGATTGCGAGCAACATCAACA
AGTTGGGGATTCAAAGCACCAGAGGGGGAGGATTGGAGTTTAGGTTTGAA
TGGAAGAGAGCACAACGAAGCgtgtttcaatgaatatcatCATTAttaat
aagaatatcttatgtgcttactttcagtaaactttgagtgcttcattgaa
aatgaagaagtagGGTGTAAActggattttgaattttagagtttcaaaat
tgtcacaattttttatcaaaatttattatattgtaagactttttgcgcaa
ttttgAGGTCCATAAGTCAAAAATCCACTGTTTGCCCCAGGGGTATCTGA
TTCGCAGTAGTAGCAAAGAACggcaaaaattgcattttttgtccatttta
agactattaaAGGCCAGGaaatggtcaaaatggtttctaaatggtgtctt
gtactaatattcaacacaaaaagacaaaaNNNNNNNNNNNNNNNNNNNNN
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attgtgttttagaatgaaatacaattcaataatggcagactttggcaaat
ttctgaccaaaaccattttggttttcccagagtatatccagaatactatg
aacaccaaaagatttcaggaccctatctgaaaccatttttgagattctag
cctgagaaaatgagactttaactctaaaaatcgcatttttatgggaaatg
caatacaataatggcagacttaggcaaatttctgacccaaaccattttga
ttctcccagagtattttcagaatacttccaagattcaaagatttcagaac
accatttgaaatcattttttagattttttccatATTGCAGATATAGCTAG
ACACATTCAAATACAATAGAACCAAACGATTTTGATTTACTTTCAAGTAT
TTCAAGAATACTATCACTGAAAGAAGATTTTGGTCCAtcagttttatatt
ttttttcattttataatatcgtaccatcaactgctcttaACTCGGGACTA
TCTTCTGACAAAAAACATGGCACAGccattcggccaccatttcactgaat
CTCCCCAAAGCCGTTAATTAACATAACCGCAAATCATATATATATGTGCG
CGCGTTTCATACTTtcactaaacacatctttttacaactttttatctgtg
gtggtgtctagctaacactgcttggcctacctacacaaccctatttccat
catataggaggatattttcacaaatggccgaaatcctgtgtaggtcgaaa
actgaggaacagataatgtgtttttttgaaatatttttgtNcaaacagac
actacaacaaaatacagtacaaaagggcAGAAAGACACACTGTACCAACT
ATCCCACGTACACTACAGGTGAAACAAACATTTATAACAAACACAAtctt
acataaaaatagaaaaaatcacacGAAAACTGAAAAGAATAGAATCGTAA
GTTGGCcgagaacccggttcggcgtgccgcgacGGGAGGACTGCACAGGG
CAAAGAAAAGTAGGAAATGAATACCTCCGATGCTAATGCTAATTCTTtag
acagaaaaaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca
agaaaaaacaaacaaacaaacacacatacaaTACACGAgaaacaatttca
atttcacaatttgaaaatatgtaaaattctTCGACGGTTTTCCCATACTT
CATAAAACAGTCAGGAAACCTGGAAANNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNaatatctttccaatgataccaaatttataaagattgaagaa
ttccttcaaaagttataggtaaatgaaaaaagagtgcacacttatcgtga
atagactttagtaatgATATTTTCTAAAGCTCTTTTAAAATTTACACGTT
TTGGTTCACGGTAGTTGGGgccttttgttaaaagtttACGTAGTTTAGAG
TTTTCTACAATTCTCAAATCACCAGTTATAATGTGTTGGTGGAAGGATCA
CAAAATTCTGAATTAACACATTCACAACGAACAGAGTCAAGTGTAAATGA
GACCTCATCATCGATAAAAATAGAATTTACAGTGTCTTGATAATTGAGAA
TTTTATTTCGTATAGTTTTATGTAGAGAATAAGTNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAAGTCT
GTGTGGCTAGAAAGTATTTGATGGTTATTTCTATTATTACGACTGTGTGT
CATTCGAGAGATAAATCTGGTGATTTTAGGAAATAGTTTTCCCACTGGAA
GATTTTGATCATGTCCCCTAGCTCTCTCATTAAGACCATAGGGGAAGACA
GTTCGGAGCTCCTTCATCCAGAAATTTTCTCGGTCTACAcgtttatatat
atatataaattttaccaaaatactATGACTAGTACTATAGGGGTGGGAAG
CATCGAGAAATCCAGATCAGCTGATCTGGATTGCAATATACTTCCCACCG
ATCATCATATCAGCAAGAACAactagaaaaaataaattagaaaatcattt
tctcaacATAGCACTGTTGCAGAGACCATCTGTTGTGAGGGAGTTTTGAT
CAGTTACTTGATCTAGCAGAGTTTTAAATGGTCTTCCACGTTTCGTATAC
TTATCATCGTTGAACATCAACAGTTTAATGGAACGCTCGTGGGTTATACG
AATAACATGTTTAGCATATTCCAGCTGCTGTTTTCCAATGAAATTAGACA
AATCTGATGTACCACATATTTCATGGAGTCTTTTGTTGGTTACCTGATAA
CGGAAATCGTTGTTAAACTCATTTACGAAACGAAAACCACCATAGATAGC
AAATAATGTGAATACGTTAAAAAAGTTTGTTCTTCCGTAGAAAATTGTCT
GTTATCGACACTCAGGAACTTTGACatgtgaaaataatttaaaaatatat
tttgacaaACTTGGTGAAAAATATGGTCGTGAAAAGTGCGGATTATATCG
CGATGACANTTGACAAACTTGGTGAAAAATATGGTCGTGAAAAGTGTGGA
TTATATCGCGATGACGGTCTTGGCTGCTTCCGCGGATCCGGCCCACGATC
AGAAagaatcaaaaaagattttgttgagATTTTTGACACCGACATCGAAT
TAAAAATAACAATCGAGACCAACCtaataaattgtaaatttccTAGATGT
TACTTTCGATCTGAACCAAGGAACGTTCAAACCTTACTCAAAACCTAACA
ACGATATCATGTACATCAACACCGAGTGAAATCACCCTCCAAATATCATC
AAATATATACCGTCAATGATTTCCGACCNCAACTCATTTTTATTACTATT
TATCACTTTTACAACCTGTCAATTAATCATCCTTTTATATGTTTTTAGAG
cagaaatttgttcaaaattttttattcatcgCACATCTGATGATCGTCTA
TACAGGCCAGTATCACAACCCGATTCTACAATATATGTAGTTCTGTACNT
ACAATAACGCCCTTAAATCAAGCGGGTACAATGAAACAATAACGTACAAA
AAACCGTCAacaaaaaatcgtaaatctaGATCACGTAAAATAATCTGGTT
TAACCCACCGTGGAGTATAAATNACTACATaatatgtagatttcaaaatc
tACATAATATGTATATCTTAGAAGATTCTAAtagtgacgtaatgttttaa
aaCAGGCCAAAATCACTCCAGAAGTGTCAACAATTTTAATTATGTGCGTG
CTCGAATTAGTTTCgggctccaaccctgaccctaactgtcTAGATAGTCA
TTTCCCCAGGATTACACCATCCACAACCCCAACCAAAAAGTGACTGAACC
GCCCTTAGCGATTCATCCTTTATATAATAAGAACGCTAAATAACTCATTG
TGGTTTATACAATATAGACCTATATGTGGAGCAATACTCCATCTTTTCCG
GTTCTACAAAATACGTAGAAATTCTAGAAACTACAGAATATGTAGATTCT
GTGCTATCAGAAACTACATATACTGTAGATTTCAACCAATTGACAGAACT
ACATATATTGTAGAACCGGGTGTGATGATGTGTTGGTCTATAAGGCGTGA
AACAAGCtgtaatgttgttttgatttttgaagaaatatacattttaaatt
aattcaGCTCTACcttggtatagagcactttgtCATTCACAGATTATTGA
tgttattaaaatatatttggTTGTGGTTATgggatggtgaaagtttgatt
gataaaacTTGGttaaagtatcaaaacaaacttgtttaaagtatcaaaac
aaacttgttgtcaaagagatttaaacagtaagtgaaaatacagagaAATC
CCAAGATTTGACCAAATGTCCCACGTTAGAGCAGTTGGGACGGTACTAAG
GTTCCTTTTGGATTGTGAAACTTCtactgtcaactgctttaacttgggac
gattggtcaaaacatgggactgacgatatctggtctgtattttcacttac
tgttaaatctctttgacaacaaatttgttttgataaataactccaccaag
tttatcaatcatactttatgTCATagcatgtcacaataactttcactgat
agcgcgccctttttaacttttttgttttcattcaaaatgaccagacggcg
attggagaattagagaacgcccgccgcctaaccgcctatcgcccgatggg
attaacaaataataagtgtgtaacttgccgcgcgagtgacatcaaacgct
ccatcgttttgccactaatatgGACTTTTATAGTTCCAGACaatcgcgtg
tgttccactatggatttttttcatatttcgatttaaaagcctactgggtg
caaaagagaaatcgtgtatttttttgATACactgttcattaactcaaata
aaatgactttggaggttcggtgaaatggtggccgaattgcagTCCCaagt
tttgtcagatagtcccaagagcagttgacggtacaaatatgaataagaaa
aacaaacaaaagatgGAATAATTAAACACttttataattattataattaG
GCTAAATTTTTTACCCTTTatgatgttgatatttttctgaATTCTCAGTA
ATGTTTTAAGTATTCTCAATTATTTTGAAGGTTATATGATTTTatcagtt
tgttttttgttgttttcaggGAACGAATGTGTGATTGTAAAGAATGGGAC
TAGGATATGTGGTACAGGAGCTGCTCTTGCCACAGCTGATGTTGTCCAAG
ATAAAtgttattttgaaatgaaagttcAATCAGATGGTAGGTTCTTTTAA
CTGGCTTACTGGATGACATCCTCAAAACTTGAGGTGGCTGGTTGGAAGAT
ATTGAAAAAAGATGTTGTTAAAGTAGAACTAAGTTAAAGAAAATCTGATT
TGGGGTGTTGGAATAAAATTACCTttgcttttaaaagaaaaacaatttct
aGAAAGGAAAGAAGTGACATACAAACATACAAACCACGGCTATTGTTTAT
TTATTAAGATAAGTTAGATCATTTTGtatgtaccttaaaggaagaaattt
tggtgggaatttaatttggcggatggccgaaaaagttttttagagggaat
ttaatttggcggatggacgataaaactaaatttggcgggattttaatttg
gcgtttgctgaacaaattatctttaaaatggcgtaaaaatagtaaaaaaa
aatgcaaaaacaccttaaaagagataatattttcaaaaagtttaatttgg
cgggaatttagtttggcggatggcggaaaaaagaaattttggtgggaact
taatttggcggattctggccaaatccgctaaatccgtcaaattttctttc
cgccaaaatttcttcctttaaggtagctgATGATTGTGCGCAAGAAACTA
AAAGTActacaaaaaatgaagttttgaattttaactatatatactatata
tataattATATAACTTATAACTTCCTTAATATTATATATACTTCTTATGA
TTTggatctctctgtaattcgaacaaaacaGAGCGAGACAGAGCCAGCTG
TATAATAAATAATTAATTTTCTGATCATCTTTATTTCAGGTATCTGGTCT
GTAGGATTAGCATCTTTGAATTGTGATTTGAACAAATTACCACTCGGGAA
TGATGGGAATAGTTGGGTATTATCTTATGATGGTGCTTTAAGACATAACA
AAGTTTCATTGGACAATATCGATCTCTCTGTGGCGGAAGGTGATTCCTAC
TTGTTTGTTGgtttgtaaataaaaatcacttttaaatgCTCGCTTGAACA
CCTCCTTCATGGTTGAATATATACCACTGCataattaaaaatgaaagatg
TGATTTATTGAATAAGTATACCTTTATTCTAACCTCACAATACTTTAGAA
GCTTTTGTTTTTAGTATCTATTatactttttcttcttctttttactTTAG
GGCTGCAGTTTTGATCATGTCGAATTGAACTTTTTTCACAATGGAAAGAA
CTTACATTGTCCCATCACTAAGATACGCGGCACTGTTCGACCCGTCATAT
CAGGTATTTATCCGAAAGTCGTTTACAACCAGTGGTTTAATAGAAACTTA
GCTTAACTTTTTTACCAGAAGACTAATGTTTGGTAAGTGGTTTTACTTCG
GTTCGCTAAACAAATAATATCTAGACAATCGCTGccatcatagtcattat
aaaaaaccccggtctggcaatgtaattgttttagctttttgttcaatttc
tttttgttacaaacaaaagacaagttgcgatttgcatactttttgatcac
gttaacaaaatctcctcttgggattggtctattttctaatcacatgatca
aaaagttagCAAAATAAATCGATCTTTTaccaataaaaagagacaaaagc
cttccagaccagtgtttttataatgactatgctgCCATCGATAAATGAAT
TGATATTTACTTAATCGATTAATGATCGATGAATTGCCAATTTCAATAGA
TGGTTTTAATGGTACCGACTGAAATGttaacaattttttgaaaagcattt
gacttttttctttgttatctTCTAGTGGATGATGGCTGTATCATAGATGT
ATTTTTCGATAATTTCGTTTACCCACCGCCTCCTGGATTTTCGAAACTCA
TGGTTGAAAAAGATCTGATATAGATTAAACTATTCGACTTGTTCAAGTTG
ATTCTGCTACGAAACGTAGAAAGAAGAATGTAGGACATTGAAGAACCAAT
ACCCATAATGCCATGGTTTTCATCTTCAAAGacgtaaaacgttcgatgcg
tTTCGCACTTCAATGGAAAAAACAGACATTAAGGAAACAAGCTTACTTCA
ATCGGATCAATTTTCGCAAGAGATTTGATTTTGCGAGCCAGAGAATTCGC
TggatgaaaatttttctggattcACTTTTGCAAATCggcattttaaaaat
ttttcacgtggattaaatttcgcgaatctaAAAAGAGCCTATTTAcagtt
ttgtttaaaatttcgatTACGAAAGTTTCGAGTTGATTTACTTTTGCAAG
TCAGCAATCTCACTTGGCGAAAATgacgaaaattcgcgaaaatgcGAAAT
CAAATTTCGCGtaaaattaatccaattaaagtataGTATAGTTTTTTGAC
TTAGTTGAATcgcagaagaaaaagaagaatcgTCGTTCGGttttacatca
aaaacaaaatatcaaatgaTCCTCGTGCCTTTGGGGTAACGTTGCTTTGC
GCTCAAATAAATATGATGAAAgtgtttgaaaattgaatttcgtgCTTGTA
TCATATCATGTTGTTTAGTTTTTCAGCTAATTATTATTTTGCTTTTTTAC
GCTTTTTCAATTTAGGGTCGCTCGGACCTCATAGAACAACAATTTATGTT
GAGCTTGAAACAAACAGTGTTTATCTACTAGACTAGGCTTTATTGGCCCG
TGGCTTGAGATATTTGGTTTAGTGTCACCCAGTTTCAAAGATGCCATGGA
AACTCTTTGACTCGGACCTCTATAAGTTGTTTGCCTCCGAacttgaacaa
gttttatggtcccttcagttaacaataccttataaaccttactccataac
tcaaaagGATTCGTGCTCCCCGCCGTGTATGTTTTCGTAGTGAGTCTTTC
GATTTTAGGgttcaaattaattttgattttgcaatgcaatatatattatt
ttttataatttatgaTAAATATCCTTCTTTTTGTATACGATGTCTTTTGT
TTAAGGAAGATTTTTAATGGGTCAAAGATGACTTCATTACATA

Coding sequence (CDS) from alignment at scaffold_104:166300..189442+

>TCONS_00045942 ID=TCONS_00045942|Name=TCONS_00045942|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_104:166300..189442+ (Clytia hemisphaerica)
ATGTCACTTTTGAAGTACGTAAACAGCTGTGGACTTAATGTAATCGGATG
CTGCTTCCGTAGTCACAGAGGATTCATTCCGGGACCAGTTTCGCAAAAAG
ATGATGGCTTGAGTACTGAACCACATGTCAGTTTAGACACATCATTCATG
GgGAACGAATGTGTGATTGTAAAGAATGGGACTAGGATATGTGGTACAGG
AGCTGCTCTTGCCACAGCTGATGTTGTCCAAGATAAAtgttattttgaaa
tgaaagttcAATCAGATGGTATCTGGTCTGTAGGATTAGCATCTTTGAAT
TGTGATTTGAACAAATTACCACTCGGGAATGATGGGAATAGTTGGGTATT
ATCTTATGATGGTGCTTTAAGACATAACAAAGTTTCATTGGACAATATCG
ATCTCTCTGTGGCGGAAGGGCTGCAGTTTTGAATGTCACTTTTGAAGTAC
GTAAACAGCTGTGGACTTAATGTAATCGGATGCTGCTTCCGTAGTCACAG
AGGATTCATTCCGGGACCAGTTTCGCAAAAAGATGATGGCTTGAGTACTG
AACCACATGTCAGTTTAGACACATCATTCATGGgGAACGAATGTGTGATT
GTAAAGAATGGGACTAGGATATGTGGTACAGGAGCTGCTCTTGCCACAGC
TGATGTTGTCCAAGATAAAtgttattttgaaatgaaagttcAATCAGATG
GTATCTGGTCTGTAGGATTAGCATCTTTGAATTGTGATTTGAACAAATTA
CCACTCGGGAATGATGGGAATAGTTGGGTATTATCTTATGATGGTGCTTT
AAGACATAACAAAGTTTCATTGGACAATATCGATCTCTCTGTGGCGGAAG
GGCTGCAGTTTTGAATGTCACTTTTGAAGTACGTAAACAGCTGTGGACTT
AATGTAATCGGATGCTGCTTCCGTAGTCACAGAGGATTCATTCCGGGACC
AGTTTCGCAAAAAGATGATGGCTTGAGTACTGAACCACATGTCAGTTTAG
ACACATCATTCATGGgGAACGAATGTGTGATTGTAAAGAATGGGACTAGG
ATATGTGGTACAGGAGCTGCTCTTGCCACAGCTGATGTTGTCCAAGATAA
AtgttattttgaaatgaaagttcAATCAGATGGTATCTGGTCTGTAGGAT
TAGCATCTTTGAATTGTGATTTGAACAAATTACCACTCGGGAATGATGGG
AATAGTTGGGTATTATCTTATGATGGTGCTTTAAGACATAACAAAGTTTC
ATTGGACAATATCGATCTCTCTGTGGCGGAAGGGCTGCAGTTTTGAATGT
CACTTTTGAAGTACGTAAACAGCTGTGGACTTAATGTAATCGGATGCTGC
TTCCGTAGTCACAGAGGATTCATTCCGGGACCAGTTTCGCAAAAAGATGA
TGGCTTGAGTACTGAACCACATGTCAGTTTAGACACATCATTCATGGgGA
ACGAATGTGTGATTGTAAAGAATGGGACTAGGATATGTGGTACAGGAGCT
GCTCTTGCCACAGCTGATGTTGTCCAAGATAAAtgttattttgaaatgaa
agttcAATCAGATGGTATCTGGTCTGTAGGATTAGCATCTTTGAATTGTG
ATTTGAACAAATTACCACTCGGGAATGATGGGAATAGTTGGGTATTATCT
TATGATGGTGCTTTAAGACATAACAAAGTTTCATTGGACAATATCGATCT
CTCTGTGGCGGAAGGGCTGCAGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029363XLOC_029363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045942-exon-scaffold_104-1491911889:166300..166649TCONS_00045942-exon-scaffold_104-1491911889:166300..166649Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1510915933:166300..166649TCONS_00045942-exon-scaffold_104-1510915933:166300..166649Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1575043694:166300..166649TCONS_00045942-exon-scaffold_104-1575043694:166300..166649Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1491911889:186319..186435TCONS_00045942-exon-scaffold_104-1491911889:186319..186435Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1510915933:186319..186435TCONS_00045942-exon-scaffold_104-1510915933:186319..186435Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1575043694:186319..186435TCONS_00045942-exon-scaffold_104-1575043694:186319..186435Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1491911889:187239..187388TCONS_00045942-exon-scaffold_104-1491911889:187239..187388Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1510915933:187239..187388TCONS_00045942-exon-scaffold_104-1510915933:187239..187388Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1575043694:187239..187388TCONS_00045942-exon-scaffold_104-1575043694:187239..187388Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1491911889:187600..187702TCONS_00045942-exon-scaffold_104-1491911889:187600..187702Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1510915933:187600..187702TCONS_00045942-exon-scaffold_104-1510915933:187600..187702Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1575043694:187600..187702TCONS_00045942-exon-scaffold_104-1575043694:187600..187702Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1491911889:188225..189442TCONS_00045942-exon-scaffold_104-1491911889:188225..189442Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1510915933:188225..189442TCONS_00045942-exon-scaffold_104-1510915933:188225..189442Clytia hemisphaericaexon
TCONS_00045942-exon-scaffold_104-1575043694:188225..189442TCONS_00045942-exon-scaffold_104-1575043694:188225..189442Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045942-proteinTCONS_00045942-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:166300..189442 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.6545	25.7122	9.96692	9.72835	34.7828	24.3153	34.9533	37.8596	22.4785	23.6239	23.2626	23.6143	21.9166	21.6268	27.1596	29.284	28.2504	32.7291	25.7168	28.8053	31.7625	31.0336	27.6206	27.9132	12.1389	14.8446	30.1617	23.4214	29.22	27.1949
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00045942 vs. Swiss-Prot (Human)
Match: SPRY7 (SPRY domain-containing protein 7 OS=Homo sapiens GN=SPRYD7 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.612e-41
Identity = 57/114 (50.00%), Postives = 70/114 (61.40%), Query Frame = 2 
Query:  248 CCFRSHR----GFIPGPVSQKDDGLSTEPHVSLDTSFMGNECVIVKNGTRICGTGAALATADVVQDKCYFEMKVQSDGIWSVGLASLNCDLNKLPLGNDGNSWVLSYDGALRHN 577
            CC R  R    G IP         L   P V LDT  MG + VIVKNG RICGTG  LA+A + Q+K YFE K+QS GIW +G+A+   +LN++PLG D +S V+  DGAL HN
Sbjct:    7 CCLRCCRDGGTGHIP---------LKEMPAVQLDTQHMGTDVVIVKNGRRICGTGGCLASAPLHQNKSYFEFKIQSTGIWGIGVATQKVNLNQIPLGRDMHSLVMRNDGALYHN 111

HSP 2 Score: 80.8777 bits (198), Expect = 5.612e-41
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:  618 GCSFDHVELNFFHNGKNLHCPITKIRGTVRPVISVDDGCIIDVFFDNFVYPPPPGFSKLMVE 803
            G ++DHVELN + NGKN+HCP + IRGTV PV+ VDD  I+D  F  F + PPPGF K++ E
Sbjct:  131 GITYDHVELNVYLNGKNMHCPASGIRGTVYPVVYVDDSAILDCQFSEFYHTPPPGFEKILFE 192
The following BLAST results are available for this feature:
BLAST of TCONS_00045942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRY75.612e-4150.00SPRY domain-containing protein 7 OS=Homo sapiens G... [more]
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