TCONS_00045953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045953
Unique NameTCONS_00045953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045953 ID=TCONS_00045953|Name=TCONS_00045953|organism=Clytia hemisphaerica|type=transcript|length=2259bp
TAAGAAAGTGTTTGAGAGAAACATTGATTTCATGAAGGCAAAATAAAGAG
TTTTAAACTAGTTGAAATTtgtttcgttgttttttttccaCTCTTTTGAA
GAGGAAGATGAAAGATTTGGACAAGGATAACCACACACAATATGTGgacc
aaaacaaaggaaaacgACAATTCCTATCCCTCATGACACGTATACGGGCT
ACACAAACGCTGGGAGCAACACTCACCAGTCGCGGTAGTTATGACCGAGC
GGCCAACATCTACAAACGTTTAATCGAAGACGCTTTGAAAAATTATTCGG
ATCATTTCAAACCAGATCGCTGTTTAACATTGGAGACAGCGCTGGAAGCT
CAAGATGAGAACGCTCAAGACCGCGCGTGGAAATTGAGGAGCGCTATAGA
TACAGTCTATGATGAATGTTTGNCGCTCAAGACCGCGCGTGGAAATTGAG
GAGCGCTATAGACACAGTCTATGATGAATGTTTGTGTGATTACAATGAAG
TTTCCGATGCCATGCCTTCAAATCTTCATACTCGAATCAAAGATACCATT
AATAAGGCATCAAGCAAAATTACATCGGGAGATCAACAACACGGCCTTAC
CGAATACATCAACTTGTTAAAAGACATGAAAAACAATGACAAATATCGTG
ATCTGATCTCACCAGCTGCTAAAGTCATGGTCAACGAATCTCTTGAAATT
GCTGAGTCAGCAGATGATCTAGATCTGAAGAACAGAAAGTTAAGAGAAAG
CCTGGATAGAGTTTATAACGAAGTTCGGTTGCCGGAAGTCTATTCGCCCA
GTGTTGGACCATTGAAATCGAGAAAGCAAAAACCCAAAGACAGTGGTATG
CTGGTAGTGGATTTCAACCAAGCTGGAGGCTCCATGTTTTCTTATCAAAT
ACAAATCTTAGATGATAAATGTATGGGCGGAAGCAGTCACGCCCAAGCTT
TGTTAGAAGAGGAGAAGAAGTATTTGAGTTTCCATGGTAACTTAGCAAGA
ACAAACCGGGGTGGATTTGCCAGCTTTCGGATTTTACCCACAGTGAAAGA
CGAGTTGAGAGGTATTCTGAAAAACACCAAAGCCGTCATGCTCGAAGTCA
TGAATTTGGAAAAACAGAATATCCGTTATAAATTCCAAATGGCGAACGAA
GCTCATTTGAAATCGTTCAATTGGCAAGCTGAATTTATTGTGGAGCCGGA
TAATCAATTCCATACGGTCGTTATCGATGTTTTGTCGTTTTGGCCGACAA
TGTTCGGTCATGTATTGTCGTCACCCGGAAATGTCGATTTCTCGAAAGTT
GATTGTCTCGGTATTCTAATCAGTCATGTTACTGTTGATGGAAAGGAAAA
CCCGGACTTTGTGGAGGGACCCTTCGGCCTGGCCGTGAGGTCCATACGTC
TTATTAAGAATAAGGATGATGATTAAGATGATTTatgtttcaaaactttt
catttcatttgcTCTTGATATGCTCTTAAGGGATTTGGAGGAGTCCGGAA
TAAAGGGTGACCGGACCTCGGATATTCCGCTGTTAAGAAAACCGGGAATA
ATGCGATCCGAAGATACCAAAATGGTCAAATCATGATTGGGATAATCAAT
GACATTGTACAGCAGACTTCCGGGCGAAATTTAGTGCGCCCTCGAATTAA
CATATTAGATCATTAAAGAGTTTGTCATATGTTTATTATAACCTTAgttg
gaaatatcatttgatttgaaactGGTATGCGAAATTTGTACTTCATAGTT
TCATCATAATGGTAGCatggattttttttaaagtttttattgcATCTTTA
TTATTAGAagtaatgattttatttttttattatcgCCGCGGAAGATTCGG
TTTGTGTCCGTCATCAGGGACTCAGCAGACGCGGTACGTTTATACATCGT
TCCGAAGTCGTTCTTCTTTGCTTTCataaactttgaaaataaataattaa
atgaataatttttaaactttgctTTGTAAACATAATCAGAGCGGCTCCGA
CCGATAGGAAAGGAAAAGTAGAACAAAATCATCCTGCTTTCTGTTTTACA
TTTTATGTATCATGGCGTCTTCGCTTATGACGTCTACGGTTTGGAATGAT
GCGGAACCGGCTCGTGACTGAAGAATCCCATTTTACTTCTAATTTCTATT
TTATATAATTCATCAGTTTCTGTGTACATAATCTGAttcagaagtttttt
ttttcaatttttgtgtaTATTAAGTAAGTAATAATATTTTCGTTTcagaa
agattttct
Run BLAST on NCBI

transcript from alignment at scaffold_104:191201..197785-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045953 ID=TCONS_00045953|Name=TCONS_00045953|organism=Clytia hemisphaerica|type=transcript|length=6585bp|location=Sequence derived from alignment at scaffold_104:191201..197785- (Clytia hemisphaerica)
TAAGAAAGTGTTTGAGAGAAACATTGATTTCATGAAGGCAAAATAAAGAG
TTTTAAACTAGTTGAAATTTGTTTCGTTGTTTTTTTTCCACTCTTTTGAA
GAGGAAGATGAAAGATTTGGACAAGTGAGTTGATATTTTCCTAACTTTTT
TTAAGATTTTATAGTTTTTTCATCAAACTCCAATATTTCTGATGAAACTT
TTTCCGAATGAGTTGTGTAACATAGCTATGCGTATTTTCCTCATTATCGA
TTATTCATTGATCTTTTTCCATTTCAAAAAAAAAAGAAAATTAAAGCATG
GAAAAAAGTTTTTTAATACAATCACCATTCATAAGGCTGCGTCTGTTATA
CTTTCTACAAAACTGTATATTATTAACTGAGGTTATTCCAGTAAGGGAAC
AATAAAGTGAAATAAAAATCGGGCTTCGTCAAATGATTTTAAAAAGCTTT
GGTTCCCACTGGGCGATAAGAAGCGATAAAAAGCGATAGAAAGCGATAAC
TTCTCAAAATGAAAGCGAGAGAAAACGAGATATGAAAAAAAAAATGTTGA
AAAAAATTTTGTTGAGGAAAATTTATGAGTAGAATAAAATGAACTCAAGA
ATATCAAAGGACGATTGGCTCACGATTTTAGAAACTTTATTTAGTTCATC
GAGTTACCCTTATTTCCTTGTCGTGATTTTATTTGAAGTTTTAAGTTTTT
GGCTAAGCTGAGAGTTTAAGTCGCCAGAGGAAAACAGCAAAAACTATAGA
ATCATCTTCAGAATGCATGTATCAACGATACGAGCTCGTTAAATTTGATA
AAGTCAATTAATACACACCTGTCTCGCAGCCCCGGAGGAACTTTTTTCCT
CAGTGGGGATAAAAATTTCTATTGAAATTCTAATGGGGATAGAAATTCTA
TTGCTTTAAAGTTAAAAAATCCAGTGTGGATGGTCTTGGAGTGTTATTTT
TAAACATTAATTTCGAATGGGATGAAATCAAAGTAAATTTCCCGGTGGCA
CCGGGTCTGTGACACAAGTGTGTATTAATATTACACACTGTATAGCTTGA
AATCATCATAGCTACACCAAAAATTACCGATTCGACAAAATAAAGAAGTG
AAGCAAAAAGAGAAATTTTAGACACTAAAAGCACATTTCTTTATAAGAAT
ACCCGATATATGTGGAAATTATCTAAAATCGTAGGAATACCCTAAGAATG
CCTCCAGGTAGAGTCTGAAAAGATCGTGATAAGATTAGGAAGATACCTAC
ATTTTAGTAAAAATTTGCTTGCTTGAACGTCACTTGAGAGCGGTTCTATT
AAAAAATCTATGTTCAAAAATTGTCGGAACTCTTTTATGCGAGGTGATAG
AAAGCTATAAATATAAAAACTTTTTCATCTTTTCACGCTGGTGATAGAAA
GCGGTAAAAAGCTCTAGAAAGCGACGGAAAGTTGAAAAAAGATTTTTCCC
CTCACACTGCATTGCATCCTTAAGATTTCTTGACAAAATACATATCATTT
ATCAATTGTCTCAAACTTGAGAAACATTCTCAACTTCAGTTGACCTAGAA
TCTGGCAATGTCTGTCTATCTGTTAGTCTGTTCGATTTGGCTGATATTTT
GAATACTTGATCTTTGGACGAATCCCTGGGGTCGTTTTTTTTTCTTCATT
TTATCAAAATTTTCATATTTAAGGGCGTTGTCACAAGATTTAGCACCAAA
ACGAGGCTAAAATTTTTGGGCAGATTGGAGACTTCAAAAATAGTTCAATT
CGGCTGAAGTTTTTCAAACTTGATACCGGCGAACCTCTGGGTTTTTTTTT
TTTTTTTTTTCATTTCTCAAAATTTTCCTTTCTAAGGGCGTGGTCACGAG
TTTTAGCACCAAAACGAGGTGTATTCCTAGGTTAGATCCAAACCCAACCT
AAAATCTAACATGTGGTACAGGCTTCGAGCAAAATTATTTTGCGAAAGTT
TTGACAATCTCTCGGAGAAAATTTGCAATTTACAGATAAAAAAGCCCACA
AAAGGCAATTTAAGGTTCAGATGCTAAATTCTACGATGGGTGATGTTCTT
GGCATATTCTTAATTTTTTGGCCAATTTCCTCATAAATATTCTTATAGAA
TACTTTAATGGGATAAATATTCGCGGGGATTAAATTTCGCGGATTTCGCG
GATTTGGGTGTCATCCGCGAAAATTCGCGAAATTAAGTCCCAATGGAAAT
TTGGAAGGGCCTGATCCACGAAATATTTCTAAACAAAACTCAAAATATGT
CAAATAAATACTATTTGAATGTTTACTGGAATCAAAGAAGCACAAATAAT
GTGTCTTTCAACAACCAACATGCATGATTTGACAGTTAAAGTCTCAAAAT
CGTGAAAATATTGCCACCCAATAGTGTCACCCGCGAAATTAAGTCCCCGC
GAAATTTTTGAATAAATTTAATCCCCGCTGATCCCCGCGAAAGTTTATCC
CATTAAAGTAGTTCACCTTTTTAATGTGTTCATGATTCTATCTTCTTCNA
GTGCCACCCGCGAAATTAAGTCCCCGCGAAATTTTTGAATTTCGCGGATA
GGCCCAACCGCGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAC
ATTCCTATAAAAAAACGTGTAGTGATAAACCTTATTGAATATGGCCGTAC
GTCATATGGTTCTCGTAGATATTATTAAGATGATTTTTTGACACAATACA
TTATATTTGTAGGGATAACCACACACAATATGTGGACCAAAACAAAGGAA
AACGACAATTCCTATCCCTCATGACACGTATACGGGCTACACAAACGCTG
GGAGCAACACTCACCAGTCGCGGTAGTTATGACCGAGCGGCCAACATCTA
CAAACGTTTAATCGAAGACGCTTTGAAAAATTATTCGGATCATTTCAAAC
CAGATCGCTGTTTAACATTGGAGACAGCGCTGGAAGCTCAAGATGAGAAC
GCTCAAGACCGCGCGTGGAAATTGAGGAGCGCTATAGATACAGTCTATGA
TGAATGTTTGNCGCTCAAGACCGCGCGTGGAAATTGAGGAGCGCTATAGA
CACAGTCTATGATGAATGTTTGTGTGATTACAATGAAGTTTCCGATGCCA
TGCCTTCAAATCTTCATACTCGAATCAAAGATACCATTAATAAGGTATAG
TGTTGTTTAAAATTTCAAAATGAAGTTTCTTCCTTAACTAAAATGTTGAA
AAAACAAAATGATAAATCTACTGAGCTTTATGTAAACCCTAGAGAAAGTT
TCTCAATAACGGCAAAGAAAATTTTTGAACGGAATTTTTTTAATTGTTAC
CCTAATGGTAGCACTACTCAATTCATGATATGCACCACTGGAGAGTTTTC
TGAAAACTTTTAAAACTTTTAAAATTTTCCTTCCAATACGTCACTTAAAC
AATAGAAAAAGTGACGTATTGGAGAAAAAAAAACAACAGAAAATTTGCAT
AATTTCGTGAAGTCATTCAGGCACGACGGAAGCTTTTTATATCTGGTACG
GCGAATGAGGAAATTTAAGCGATTTTATAGCGAGTTTACCGACGAAGAGG
AAAATTTCGGGTATTTTTGTGAAAATCTGGTACGGCGGCCGCCGTACCTG
CCGTACCCGTTGCGTCGTGCCTGTCATTACAGTGGTGCATATCATGAATA
GCGGTGTAAATGAATCGAGAGCATTAGATCTACTTAGAATGGTGTACCGC
CATTTGACGTTAATTATTAGCACTGTGATGTCCTCTTTTCGGGAACCACT
TTCGAATAAACTGATGGCGGATTTAGCTTTATCCAGGGTTTATAAAGATC
AGTGGATAAATCCTTGGCTCAGATGCGCTTCTTTGAAAGCAGAAAGTAAC
AAAGGGATGAAGTTTAATTGATTGTCTGAATTCTCCACAGCTTTAACTGG
TTTTCGCATTCTGTCTTATGTACATGTAGGCATCAAGCAAAATTACATCG
GGAGATCAACAACACGGCCTTACCGAATACATCAACTTGTTAAAAGACAT
GAAAAACAATGACAAATATCGTGATCTGATCTCACCAGCTGCTAAAGTCA
TGGTCAACGAATCTCTTGAAATTGCTGAGTCAGCAGATGATCTAGATCTG
AAGAACAGAAAGTTAAGAGAAAGCCTGGATAGAGTTTATAACGAAGTTCG
GTTGCCGGAAGTCTATTCGCCCAGTGTTGGACCATTGGTGAGTTCTCTTT
CGCTCAAGTCTTATCTTCCAACAATATGTTTTAAAAACATCCTCCCTCCC
CTGCGAGACCGCCAATTTTTATGTCAAAGATTGAAATTTTTCAAGATTTC
TCAAACAAAATTTATTTCTACCTTTTCACTCTCACTTTTCACTGAAAATC
AGATTTTTGTAAAGAAAACCGAAAAACTATCCAGTGGACAGCTCTTTTTT
AATCCACGAACGTCATTGAGCGTGCTTACACAGCATTTTTAAATTTTATT
GTTTACTATGCTTTTTCAGCATAAGATCTTATGAAAAAAGAATATCTTCA
AATTATCGACCATAATTTTTGTCATAGAAATCGAGAAAGCAAAAACCCAA
AGACAGTGGTATGCTGGTAGTGGATTTCAACCAAGCTGGAGGCTCCATGT
TTTCTTATCAAATACAAATCTTAGATGATAAATGTATGGGCGGAAGCAGT
CACGCCCAAGCTTTGTTAGAAGAGGTATAATCATTTTGTTTCTCCTTTTT
TGTTGGCTTTATTCAATACACAGGTTGCAAAATTAAAGTCTGATAGACAA
ATCATGCTTTTACTCGAAATTTTTATGTGCTTGTTGCATAACATTTATTT
CTGATTAATTCGAATTTATTGACACTATTGAATTTATCAGCTGTAAGTTG
TTAAAGCAAGTAACACTTTTTCGAGTAATCACATGTTTTGACTGCATTGA
TATAATTATTTTGCAACCCGCGTATTTAGGGAAATTACAATGCTACGATA
TCTGTTCCTTTACTTGCAGAACCTTTAAAGGGACGTCTTCATGTGAGACT
GATTTAAATATTTACGAGCCCGACCGACTCGAAATTGAAAAATTCGAAAT
ATTAATCGCTCTCTGGATTTTTCCAACCGTCAATTTATCAAAATACGGAT
AGCTTTTAAGTTTTTCAATTTTTCGGGAAACATATGCAGTAGATTTGATT
TATTCCACCCTTTTTCGGTTGTTTTCTAGATTTTTAATAGTTTTATGCTG
CCTTTTTAGCAAAGTTGCTAACCGAGCCTACTTTTTGACTTGCACATCCC
GTAAAACAACAATAACAGTAATTTTGTTACCCTTTAGGAGAAGAAGTATT
TGAGTTTCCATGGTAACTTAGCAAGAACAAACCGGGGTGGATTTGCCAGC
TTTCGGATTTTACCCACAGTGAAAGACGAGTTGAGAGGTATTCTGAAAAA
CACCAAAGCCGTCATGCTCGAAGTCATGAATTTGGAAAAACAGAATATCC
GTTATAAATTCCAAATGGCGAACGAAGCTCATTTGAAATCGTTCAATTGG
CAAGCTGAATTTATTGTGGAGCCGGATAATCAATTCCATACGGTCGTTAT
CGATGTTTTGTCGTTTTGGCCGACAATGTTCGGTCATGTATTGTCGTCAC
CCGGAAATGTCGATTTCTCGAAAGTTGATTGTCTCGGTATTCTAATCAGT
CATGTTACTGTTGATGGAAAGGAAAACCCGGACTTTGTGGAGGGACCCTT
CGGCCTGGCCGTGAGGTCCATACGTCTTATTAAGAATAAGGATGATGATT
AAGATGATTTATGTTTCAAAACTTTTCATTTCATTTGCTCTTGATATGCT
CTTAAGGGATTTGGAGGAGTCCGGAATAAAGGGTGACCGGACCTCGGATA
TTCCGCTGTTAAGAAAACCGGGAATAATGCGATCCGAAGATACCAAAATG
GTCAAATCATGATTGGGATAATCAATGACATTGTACAGCAGACTTCCGGG
CGAAATTTAGTGCGCCCTCGAATTAACATATTAGATCATTAAAGAGTTTG
TCATATGTTTATTATAACCTTAGTTGGAAATATCATTTGATTTGAAACTG
GTATGCGAAATTTGTACTTCATAGTTTCATCATAATGGTAGCATGGATTT
TTTTTAAAGTTTTTATTGCATCTTTATTATTAGAAGTAATGATTTTATTT
TTTTATTATCGCCGCGGAAGATTCGGTTTGTGTCCGTCATCAGGGACTCA
GCAGACGCGGTACGTTTATACATCGTTCCGAAGTCGTTCTTCTTTGCTTT
CATAAACTTTGAAAATAAATAATTAAATGAATAATTTTTAAACTTTGCTT
TGTAAACATAATCAGAGCGGCTCCGACCGATAGGAAAGGAAAAGTAGAAC
AAAATCATCCTGCTTTCTGTTTTACATTTTATGTATCATGGCGTCTTCGC
TTATGACGTCTACGGTTTGGAATGATGCGGAACCGGCTCGTGACTGAAGA
ATCCCATTTTACTTCTAATTTCTATTTTATATAATTCATCAGTTTCTGTG
TACATAATCTGATTCAGAAGTTTTTTTTTTCAATTTTTGTGTATATTAAG
TAAGTAATAATATTTTCGTTTCAGAAAGATTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029368XLOC_029368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045953-exon-scaffold_104-1575043694:197662..197785TCONS_00045953-exon-scaffold_104-1575043694:197662..197785Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1575043694:194642..195073TCONS_00045953-exon-scaffold_104-1575043694:194642..195073Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1575043694:193599..193856TCONS_00045953-exon-scaffold_104-1575043694:193599..193856Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1575043694:193112..193258TCONS_00045953-exon-scaffold_104-1575043694:193112..193258Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1575043694:191201..192498TCONS_00045953-exon-scaffold_104-1575043694:191201..192498Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1510915933:197662..197785TCONS_00045953-exon-scaffold_104-1510915933:197662..197785Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1510915933:194642..195073TCONS_00045953-exon-scaffold_104-1510915933:194642..195073Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1510915933:193599..193856TCONS_00045953-exon-scaffold_104-1510915933:193599..193856Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1510915933:193112..193258TCONS_00045953-exon-scaffold_104-1510915933:193112..193258Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1510915933:191201..192498TCONS_00045953-exon-scaffold_104-1510915933:191201..192498Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1491911889:197662..197785TCONS_00045953-exon-scaffold_104-1491911889:197662..197785Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1491911889:194642..195073TCONS_00045953-exon-scaffold_104-1491911889:194642..195073Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1491911889:193599..193856TCONS_00045953-exon-scaffold_104-1491911889:193599..193856Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1491911889:193112..193258TCONS_00045953-exon-scaffold_104-1491911889:193112..193258Clytia hemisphaericaexon
TCONS_00045953-exon-scaffold_104-1491911889:191201..192498TCONS_00045953-exon-scaffold_104-1491911889:191201..192498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:191201..197785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.3792e-06	0.00152016	8.77017	1.83523e-06	8.9358	0.00170821	11.1309	0.275398	11.4632	15.4733	15.9516	13.1621	10.4343	11.3875	5.07331	5.33316	15.5405	21.8614	6.23733	1.45879	85.1135	79.218	31.8692	34.5646	3.73572	5.41124	52.3658	45.437	6.03385	3.94241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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