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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045958 ID=TCONS_00045958|Name=TCONS_00045958|organism=Clytia hemisphaerica|type=transcript|length=1654bp
CAAGTGTTTCACTCCGCAAGTGTAGACCGTTCTTTAGGAAAAGGAATTCC
AcgtatatattatatatttaaTATACAGTCTGTAAGCCCGGTCTCCGCTC
TGCTACAACCatttaaagtttgaattttatgtaaaaaaaattgtggaaac
ttttcacttttttcaaaaacactgcAGAGTCAAAGGGTTAACAACGCAAG
TGTAGACCATCTCATAATAACTATTCTACATTAACACACAGTCGTTAGTC
TTTTTGTAAATGACAAATTCTTGGACACATTGGCCTTCTTCCCATCTCCT
CCACAAAGATTCATCCAGCCCATGATGATTCAAATCGTCCGGATACCGAA
ACCGTGACGTGTACCTAGCTGCTTTACCAACCGGTACAGGCCTGATGTCT
TTCTTGGTCCGGCTGTATTTTTTCAAGATGGTTTTTACAAGACTCCAGCC
TGTGATTTCTGTATCTAACATGATTTCTTTCTCTTCTAACAATTCCCCGA
TTTCAGATTCGTTACTGAAAACCCGATACGTATAAACCGGGTGATACTTG
AAACGTATCGGAAATGTTGagtcaaaatctttgattgttTTATCATTCGG
TAGAAACTCTCCTTTTGTTTTAGCGTCTTTTAAGGACAATTTGAACGACA
GAGTTTCCACTCTTAAATATTCAGCTAACTTGGTTTTAACTTCCTCCACA
GTGCTGGAATCTTGAACAGTAATTGGGGACCAATTCGTGCCAGACTGGAA
ATCGGATTCCCAACACGGGGCAAAAAGTACGTCAAACTTTCCTCGAATCA
CCAACAAATGAAGAATCAACTCCTTGTTGGAACAGCTCCATTCCTGGCCT
GCCAAAGCCAATATCTCCTCTGAATCTTGGCGCTCCGTTCCTTGCAACAT
TAAAGACTGATTATGCTTGTGTATCTGATGCTGGTCAAATAAGTAGTTCT
TCACATCTGCGATTGTCGGATACTTCCCTAATTCAAGTTCCTCCATTTTA
GTCAAGAAGGTTAATTTGaacatcttgaagactttgatGCTATAATCGAA
ACAAAGCACCTCACGCCTCAAACTTGTAGTAGCTACGTAAAGGTCTTTAA
ACGCACAATCTTTCGGTAGATCTGAAGTCACTATCAAACCGTTACGGTCG
TAAATCAATTGCTCGTCGCTTGGTAACCCGGTAAGATTAAGAATGTTGAG
TCTGACCAAGTCTATAGAAAACGTTGTCCCAAGCATCATCATAATATGTT
TGGTGGCAAAACCCCTAACAGTTAATCCACTTAATTCTGCAATGTTGTAC
TCGTTTAATTTTTCTCCAAACTTTTCCCTGCATTCACTCCGCTGCTGGCA
AACAGCCAACAGTAACGTCAAGCTCTCTTCGTGATCTCCTTTTTCCGACA
GATAGGAGAGTTTGATGTTCTCTGGCAACGGTGAAGCTCTATAGGACTTT
GAACGCTggtaatattttaaaatgatttGCGCTTCTGCAGGTATACCTAA
CTCCTTGGTGATGTGTTTTTTGATATCGAACGTGTGGTTGGATTGGTCAA
ATCGGCGTTTGAAGATCAATTGGACTCTGTCTGGTCCGGTTGGTGGTGGT
AGATTGTAGACCGTTACTTGGATAGTAGAATCATTCTGATCACAAACATC
GTCG Run BLAST on NCBI protein sequence of TCONS_00045958-protein >TCONS_00045958-protein ID=TCONS_00045958-protein|Name=TCONS_00045958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
DDVCDQNDSTIQVTVYNLPPPTGPDRVQLIFKRRFDQSNHTFDIKKHITK
ELGIPAEAQIILKYYQRSKSYRASPLPENIKLSYLSEKGDHEESLTLLLA
VCQQRSECREKFGEKLNEYNIAELSGLTVRGFATKHIMMMLGTTFSIDLV
RLNILNLTGLPSDEQLIYDRNGLIVTSDLPKDCAFKDLYVATTSLRREVL
CFDYSIKVFKMFKLTFLTKMEELELGKYPTIADVKNYLFDQHQIHKHNQS
LMLQGTERQDSEEILALAGQEWSCSNKELILHLLVIRGKFDVLFAPCWES
DFQSGTNWSPITVQDSSTVEEVKTKLAEYLRVETLSFKLSLKDAKTKGEF
LPNDKTIKDFDSTFPIRFKYHPVYTYRVFSNESEIGELLEEKEIMLDTEI
TGWSLVKTILKKYSRTKKDIRPVPVGKAARYTSRFRYPDDLNHHGLDESL
WRRWEEGQCVQEFVIYKKTNDCVLM Run BLAST on NCBI transcript from alignment at scaffold_104:45964..47617 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045958 ID=TCONS_00045958|Name=TCONS_00045958|organism=Clytia hemisphaerica|type=transcript|length=1654bp|location=Sequence derived from alignment at scaffold_104:45964..47617 (Clytia hemisphaerica)
CGACGATGTTTGTGATCAGAATGATTCTACTATCCAAGTAACGGTCTACA
ATCTACCACCACCAACCGGACCAGACAGAGTCCAATTGATCTTCAAACGC
CGATTTGACCAATCCAACCACACGTTCGATATCAAAAAACACATCACCAA
GGAGTTAGGTATACCTGCAGAAGCGCaaatcattttaaaatattaccAGC
GTTCAAAGTCCTATAGAGCTTCACCGTTGCCAGAGAACATCAAACTCTCC
TATCTGTCGGAAAAAGGAGATCACGAAGAGAGCTTGACGTTACTGTTGGC
TGTTTGCCAGCAGCGGAGTGAATGCAGGGAAAAGTTTGGAGAAAAATTAA
ACGAGTACAACATTGCAGAATTAAGTGGATTAACTGTTAGGGGTTTTGCC
ACCAAACATATTATGATGATGCTTGGGACAACGTTTTCTATAGACTTGGT
CAGACTCAACATTCTTAATCTTACCGGGTTACCAAGCGACGAGCAATTGA
TTTACGACCGTAACGGTTTGATAGTGACTTCAGATCTACCGAAAGATTGT
GCGTTTAAAGACCTTTACGTAGCTACTACAAGTTTGAGGCGTGAGGTGCT
TTGTTTCGATTATAGCatcaaagtcttcaagatgttCAAATTAACCTTCT
TGACTAAAATGGAGGAACTTGAATTAGGGAAGTATCCGACAATCGCAGAT
GTGAAGAACTACTTATTTGACCAGCATCAGATACACAAGCATAATCAGTC
TTTAATGTTGCAAGGAACGGAGCGCCAAGATTCAGAGGAGATATTGGCTT
TGGCAGGCCAGGAATGGAGCTGTTCCAACAAGGAGTTGATTCTTCATTTG
TTGGTGATTCGAGGAAAGTTTGACGTACTTTTTGCCCCGTGTTGGGAATC
CGATTTCCAGTCTGGCACGAATTGGTCCCCAATTACTGTTCAAGATTCCA
GCACTGTGGAGGAAGTTAAAACCAAGTTAGCTGAATATTTAAGAGTGGAA
ACTCTGTCGTTCAAATTGTCCTTAAAAGACGCTAAAACAAAAGGAGAGTT
TCTACCGAATGATAAaacaatcaaagattttgactCAACATTTCCGATAC
GTTTCAAGTATCACCCGGTTTATACGTATCGGGTTTTCAGTAACGAATCT
GAAATCGGGGAATTGTTAGAAGAGAAAGAAATCATGTTAGATACAGAAAT
CACAGGCTGGAGTCTTGTAAAAACCATCTTGAAAAAATACAGCCGGACCA
AGAAAGACATCAGGCCTGTACCGGTTGGTAAAGCAGCTAGGTACACGTCA
CGGTTTCGGTATCCGGACGATTTGAATCATCATGGGCTGGATGAATCTTT
GTGGAGGAGATGGGAAGAAGGCCAATGTGTCCAAGAATTTGTCATTTACA
AAAAGACTAACGACTGTGTGTTAATGTAGAATAGTTATTATGAGATGGTC
TACACTTGCGTTGTTAACCCTTTGACTCTgcagtgtttttgaaaaaagtg
aaaagtttccacaattttttttacataaaattcaaactttaaatGGTTGT
AGCAGAGCGGAGACCGGGCTTACAGACTGTATAttaaatatataatatat
acgTGGAATTCCTTTTCCTAAAGAACGGTCTACACTTGCGGAGTGAAACA
CTTG Coding sequence (CDS) from alignment at scaffold_104:45964..47617 >TCONS_00045958 ID=TCONS_00045958|Name=TCONS_00045958|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_104:45964..47617 (Clytia hemisphaerica)
GACGATGTTTGTGATCAGAATGATTCTACTATCCAAGTAACGGTCTACAA
TCTACCACCACCAACCGGACCAGACAGAGTCCAATTGATCTTCAAACGCC
GATTTGACCAATCCAACCACACGTTCGATATCAAAAAACACATCACCAAG
GAGTTAGGTATACCTGCAGAAGCGCaaatcattttaaaatattaccAGCG
TTCAAAGTCCTATAGAGCTTCACCGTTGCCAGAGAACATCAAACTCTCCT
ATCTGTCGGAAAAAGGAGATCACGAAGAGAGCTTGACGTTACTGTTGGCT
GTTTGCCAGCAGCGGAGTGAATGCAGGGAAAAGTTTGGAGAAAAATTAAA
CGAGTACAACATTGCAGAATTAAGTGGATTAACTGTTAGGGGTTTTGCCA
CCAAACATATTATGATGATGCTTGGGACAACGTTTTCTATAGACTTGGTC
AGACTCAACATTCTTAATCTTACCGGGTTACCAAGCGACGAGCAATTGAT
TTACGACCGTAACGGTTTGATAGTGACTTCAGATCTACCGAAAGATTGTG
CGTTTAAAGACCTTTACGTAGCTACTACAAGTTTGAGGCGTGAGGTGCTT
TGTTTCGATTATAGCatcaaagtcttcaagatgttCAAATTAACCTTCTT
GACTAAAATGGAGGAACTTGAATTAGGGAAGTATCCGACAATCGCAGATG
TGAAGAACTACTTATTTGACCAGCATCAGATACACAAGCATAATCAGTCT
TTAATGTTGCAAGGAACGGAGCGCCAAGATTCAGAGGAGATATTGGCTTT
GGCAGGCCAGGAATGGAGCTGTTCCAACAAGGAGTTGATTCTTCATTTGT
TGGTGATTCGAGGAAAGTTTGACGTACTTTTTGCCCCGTGTTGGGAATCC
GATTTCCAGTCTGGCACGAATTGGTCCCCAATTACTGTTCAAGATTCCAG
CACTGTGGAGGAAGTTAAAACCAAGTTAGCTGAATATTTAAGAGTGGAAA
CTCTGTCGTTCAAATTGTCCTTAAAAGACGCTAAAACAAAAGGAGAGTTT
CTACCGAATGATAAaacaatcaaagattttgactCAACATTTCCGATACG
TTTCAAGTATCACCCGGTTTATACGTATCGGGTTTTCAGTAACGAATCTG
AAATCGGGGAATTGTTAGAAGAGAAAGAAATCATGTTAGATACAGAAATC
ACAGGCTGGAGTCTTGTAAAAACCATCTTGAAAAAATACAGCCGGACCAA
GAAAGACATCAGGCCTGTACCGGTTGGTAAAGCAGCTAGGTACACGTCAC
GGTTTCGGTATCCGGACGATTTGAATCATCATGGGCTGGATGAATCTTTG
TGGAGGAGATGGGAAGAAGGCCAATGTGTCCAAGAATTTGTCATTTACAA
AAAGACTAACGACTGTGTGTTAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045958-exon-scaffold_104-1491911889:45964..47617 | TCONS_00045958-exon-scaffold_104-1491911889:45964..47617 | Clytia hemisphaerica | exon |
| TCONS_00045958-exon-scaffold_104-1510915933:45964..47617 | TCONS_00045958-exon-scaffold_104-1510915933:45964..47617 | Clytia hemisphaerica | exon |
| TCONS_00045958-exon-scaffold_104-1575043694:45964..47617 | TCONS_00045958-exon-scaffold_104-1575043694:45964..47617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:45964..47617 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000626 | Ubiquitin_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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