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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045961 ID=TCONS_00045961|Name=TCONS_00045961|organism=Clytia hemisphaerica|type=transcript|length=1091bp
atcaatcataGTAGACGTGAAGATAGCTCTTAGTTCAATCAAAACTTATG
AATGAATTCTATATTGTCAATATAAAATTTACGTCTACAAAAATACTTGA
TAAAGGCAAACGTCAACTGTCGTAAACGCAAGTATGTTTTATTTTAAGCT
TAAACTTATGATATGATATGCTATGATATGATAACAAAAGAAACAATGAT
ATAACTCAATACTGGAAAATttctacacccctgtctcacagccctagTGG
AGCTTCTTCCTACAATGtgttgaaaatttctatcgaaatcaaAGAGACTa
ggttttaaaaattaaattttaatgtTCTCAGGTCAAAAAATCAAGGGGAG
ATAGCTTTGGAGTGCTGTTTTCATCGAATCTTTGTCTATTTTCTAGTGGG
GCGGTGGTCCCaacaggtctgtgacacaggggtgtatttcaGTCTATGTA
TGAGTCTATATGTATGGTGATGTGTGTTTTAAAGTAAAGTAGAAGGGACA
TGGCACAGATATTCCACAGTATAGCACTCCCGACAATCATTTAGCAATTA
TAAGATACTTAGTAAAAGTAAGGCACTTTTGCTGGAATAAGTCGATAAAT
ATTATCatgattttgaaaatcaaaaacaaaatcataaaataaaataaata
gtaACATTTTAAATGTAGAAGCTCAGAAAAAAGATGCCGAACTTTGTTAC
TTTAGGGTAAAAATATCAGTTTAACAAATTTCAACGATATAAAAATAATC
CAATCAtataaaaggtaaaaaattaaatgaaagtaACATTCATTATCCTA
CCttggaaagaaaatagttaTCATATGATACCGAGTACAATATAGGATAT
ATTCCCCAGGGGGGACTAGGGTTAAAAGGGGTAGGGGATGTGTCGCtagt
cagggtaccttttttgacctCCTTGTGTCcgaggtagggtcgcaaaaaca
ccaaaaatcagTCTCTTGTAGGGTACTATTTTGGgggaatctggaaaatt
tttagacaattttggaatttcagttccattcagggtcactttttttccat
ttttcgtgTTTCAGTGACACACCCTCGTCGGTCAGGGCAGT Run BLAST on NCBI transcript from alignment at scaffold_104:98601..99691 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045961 ID=TCONS_00045961|Name=TCONS_00045961|organism=Clytia hemisphaerica|type=transcript|length=1091bp|location=Sequence derived from alignment at scaffold_104:98601..99691 (Clytia hemisphaerica)
ACTGCCCTGACCGACGAGGGTGTGTCACTGAAAcacgaaaaatggaaaaa
aagtgaccctgaatggaactgaaattccaaaattgtctaaaaattttcca
gattcccCCAAAATAGTACCCTACAAGAGActgatttttggtgtttttgc
gaccctacctcgGACACAAGGaggtcaaaaaaggtaccctgactaGCGAC
ACATCCCCTACCCCTTTTAACCCTAGTCCCCCCTGGGGAATATATCCTAT
ATTGTACTCGGTATCATATGAtaactattttctttccaaGGTAGGATAAT
GAATGTtactttcatttaattttttaccttttataTGATTGGATTATTTT
TATATCGTTGAAATTTGTTAAACTGATATTTTTACCCTAAAGTAACAAAG
TTCGGCATCTTTTTTCTGAGCTTCTACATTTAAAATGTtactatttattt
tattttatgattttgtttttgattttcaaaatcatGATAATATTTATCGA
CTTATTCCAGCAAAAGTGCCTTACTTTTACTAAGTATCTTATAATTGCTA
AATGATTGTCGGGAGTGCTATACTGTGGAATATCTGTGCCATGTCCCTTC
TACTTTACTTTAAAACACACATCACCATACATATAGACTCATACATAGAC
tgaaatacacccctgtgtcacagacctgttGGGACCACCGCCCCACTAGA
AAATAGACAAAGATTCGATGAAAACAGCACTCCAAAGCTATCTCCCCTTG
ATTTTTTGACCTGAGAacattaaaatttaatttttaaaacctAGTCTCTt
tgatttcgatagaaattttcaacaCATTGTAGGAAGAAGCTCCActaggg
ctgtgagacaggggtgtagaaATTTTCCAGTATTGAGTTATATCATTGTT
TCTTTTGTTATCATATCATAGCATATCATATCATAAGTTTAAGCTTAAAA
TAAAACATACTTGCGTTTACGACAGTTGACGTTTGCCTTTATCAAGTATT
TTTGTAGACGTAAATTTTATATTGACAATATAGAATTCATTCATAAGTTT
TGATTGAACTAAGAGCTATCTTCACGTCTACtatgattgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045961-exon-scaffold_104-1491911889:98601..99691 | TCONS_00045961-exon-scaffold_104-1491911889:98601..99691 | Clytia hemisphaerica | exon |
| TCONS_00045961-exon-scaffold_104-1510915933:98601..99691 | TCONS_00045961-exon-scaffold_104-1510915933:98601..99691 | Clytia hemisphaerica | exon |
| TCONS_00045961-exon-scaffold_104-1575043694:98601..99691 | TCONS_00045961-exon-scaffold_104-1575043694:98601..99691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:98601..99691 . |
Blast
The following BLAST results are available for this feature:
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