TCONS_00045968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045968
Unique NameTCONS_00045968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045968 ID=TCONS_00045968|Name=TCONS_00045968|organism=Clytia hemisphaerica|type=transcript|length=750bp
GAAATTTTTCCCGAAATTTTTGGACCTGCATCTTATTAATATATTTGTGG
AGCAAGCTCAAAGTCATCTTTTGAAAAGACAAAATATTCCGAACGCAAGA
ATGGTGACACACAAATCAAACCCAATTTGAAAttagaaattcaaaagaaa
GGCTAGACTGTAGAAGGTTTAAAACTAATCAAAGTACAATCAAAGCTTCC
TTAAATGGTTACAATGCAACAGAAACACAATCAACTTTCATTTtctacat
aagtgttcccgttccATATCAGATACATATCGNATGGTTACAATGCAACA
GAAACACAATCAACTTTCATTTtctacataagtgttcccgttccATATCA
GATACATATCGATACTGATGTCGATGTTTCATAACAGGACAgtgtcttta
agcaaaaaatgtttttcttttcctctttctgaccaatcttgcccCACATC
CGTgccaattcaatatcaaaagcttgtaaattaaaattgatgagaaaGCA
ACTCGAGTAActgttatttaaaaacaaaacctttaaaatatcGACCGGAA
AACTTTGGAAAATGCCGCTGCAGTTAATTTATTTTGAGTTCTTTAAATTA
ATTTCGGAACACCCTGTATTATAGCTAACCACTTTTAAtacaatacatgt
ttttttcataagcacaCGAAAAGGCTGATAGATGCTTACAAAGATGCTTA
TATCCCaagcaaaattattttccacccaggacatttttattccaaccccc
Run BLAST on NCBI

transcript from alignment at scaffold_104:218085..218834

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045968 ID=TCONS_00045968|Name=TCONS_00045968|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at scaffold_104:218085..218834 (Clytia hemisphaerica)
gggggttggaataaaaatgtcctgggtggaaaataattttgcttGGGATA
TAAGCATCTTTGTAAGCATCTATCAGCCTTTTCGtgtgcttatgaaaaaa
acatgtattgtaTTAAAAGTGGTTAGCTATAATACAGGGTGTTCCGAAAT
TAATTTAAAGAACTCAAAATAAATTAACTGCAGCGGCATTTTCCAAAGTT
TTCCGGTCgatattttaaaggttttgtttttaaataacagTTACTCGAGT
TGCtttctcatcaattttaatttacaagcttttgatattgaattggcACG
GATGTGgggcaagattggtcagaaagaggaaaagaaaaacattttttgct
taaagacacTGTCCTGTTATGAAACATCGACATCAGTATCGATATGTATC
TGATATggaacgggaacacttatgtagaAAATGAAAGTTGATTGTGTTTC
TGTTGCATTGTAACCATNCGATATGTATCTGATATggaacgggaacactt
atgtagaAAATGAAAGTTGATTGTGTTTCTGTTGCATTGTAACCATTTAA
GGAAGCTTTGATTGTACTTTGATTAGTTTTAAACCTTCTACAGTCTAGCC
tttcttttgaatttctaaTTTCAAATTGGGTTTGATTTGTGTGTCACCAT
TCTTGCGTTCGGAATATTTTGTCTTTTCAAAAGATGACTTTGAGCTTGCT
CCACAAATATATTAATAAGATGCAGGTCCAAAAATTTCGGGAAAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029381XLOC_029381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045968-exon-scaffold_104-1491911889:218085..218834TCONS_00045968-exon-scaffold_104-1491911889:218085..218834Clytia hemisphaericaexon
TCONS_00045968-exon-scaffold_104-1510915933:218085..218834TCONS_00045968-exon-scaffold_104-1510915933:218085..218834Clytia hemisphaericaexon
TCONS_00045968-exon-scaffold_104-1575043694:218085..218834TCONS_00045968-exon-scaffold_104-1575043694:218085..218834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:218085..218834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.227884	0.149155	0.533888	0.140395	0.763443	0.871145	0	0	0	0.0876092	0	0	0.0374291	0	0	0	0.0698827	0.218921	0.193115	0.0934378	0	0.205534	0	0	0.0905082	0.195458	0	0.149005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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