TCONS_00045972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045972
Unique NameTCONS_00045972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045972 ID=TCONS_00045972|Name=TCONS_00045972|organism=Clytia hemisphaerica|type=transcript|length=449bp
ATTTTGATCGACGGAACTTAAGAatagctcaaaaaaccaacttccCCTAA
GGAAATGCAGGCAAAAACGGgattgtttacctccagagacaaAACGGTGG
AGAGCCTCAAAAAAATGCGCAAGCATCTGTTTtgtgaattacgggaaagg
tgtattaaagaagaaataaaaaaacgaAATCGAAATTTTGTCAGGGGGGG
TGACTTGAACCAGTATTCGAATTTGCTATCATCTTCCGACTAATTTTTAG
GGAAGACCAGAAATCTACGGAAATATAACAAAATTTATTGCCGTACAAAA
CGATAAACcagagatacactctggtacagagtagggAAAAACTTCCTGCT
CAAAATTTAATCAGCTAattttgtgtattgaaagtacGAAACTGCATAAA
AATTTTGGAAAGGATCTTTTTGTCATGGTTCAAGTTGGGTAAAAAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_104:278468..278916

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045972 ID=TCONS_00045972|Name=TCONS_00045972|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at scaffold_104:278468..278916 (Clytia hemisphaerica)
AATTTTTTTACCCAACTTGAACCATGACAAAAAGATCCTTTCCAAAATTT
TTATGCAGTTTCgtactttcaatacacaaaatTAGCTGATTAAATTTTGA
GCAGGAAGTTTTTccctactctgtaccagagtgtatctctgGTTTATCGT
TTTGTACGGCAATAAATTTTGTTATATTTCCGTAGATTTCTGGTCTTCCC
TAAAAATTAGTCGGAAGATGATAGCAAATTCGAATACTGGTTCAAGTCAC
CCCCCCTGACAAAATTTCGATTtcgtttttttatttcttctttaatacac
ctttcccgtaattcacaAAACAGATGCTTGCGCATTTTTTTGAGGCTCTC
CACCGTTttgtctctggaggtaaacaatcCCGTTTTTGCCTGCATTTCCT
TAGGggaagttggttttttgagctatTCTTAAGTTCCGTCGATCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029385XLOC_029385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045972-exon-scaffold_104-1491911889:278468..278916TCONS_00045972-exon-scaffold_104-1491911889:278468..278916Clytia hemisphaericaexon
TCONS_00045972-exon-scaffold_104-1510915933:278468..278916TCONS_00045972-exon-scaffold_104-1510915933:278468..278916Clytia hemisphaericaexon
TCONS_00045972-exon-scaffold_104-1575043694:278468..278916TCONS_00045972-exon-scaffold_104-1575043694:278468..278916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:278468..278916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295648	0	0.167374	0.982495	0	0	0	0	0.249137	0	0.149765	0.1969	0.196626	0	0	0	0	0	0	0	0	0	0	0.154093	0	0.141647	0	0	0.164073	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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