TCONS_00045983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045983
Unique NameTCONS_00045983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045983 ID=TCONS_00045983|Name=TCONS_00045983|organism=Clytia hemisphaerica|type=transcript|length=2203bp
GTTTTCTTGAGTTTCTGGTACAAATTCATTCTTCTATTTACTTTATATTA
GAATTTTCTCAATTAGAATACTCAGAACCTCTTTCTTCTTAATTGTTTAT
GGAATTTATTCGTCGAATGTTAGGTATGGTCGAGTATAAGCCATACAAAG
TTCAAGATTGTTTTGGGAAAAAGCGTGTTGGTCTAACAGCATCCAACTTC
AAAGacctcaaaaacaaagcaaaattaAAGTTAAATTTGGAGAACGTAGA
TTCAGTATATTTAGAGGATGGAACTGAAGTTGAGGATGACTCTTATCTTC
TTTCTTTACCGACTCAAACTGTTCTTATTGTTTTACAAATTGGTGAAGTT
TGGGAAGGGTACATCAGTTACTTGAAGATGGCAAGCAACAAGATCATCGA
AAACGTTGCCATGAGAACGCTCACAATCAACAAAATTCAAGAACTTCTCT
TGGATCCAGAATCTCCAGAACTCTCCCTCATCATGGATTTCGTCCATACT
ATTCACTCCAACCTCGATGCAGAACATATTGAGGATGATCCAGACTGGTT
TGAAGGTGTTGCATCCaattacaaaaacaaaacacacgTTATGAGAGATT
CTGCTAAAAATCGCATTCGTGGATATTTGGCAAAAACTAAAGATTTCGCA
AGCTCCACTaaaatgccGGGAAAGAAAGTTCGAGTGGAATTCACCAACAT
CATCGATCAATTTCAAAACGAATTAAAAGAGAGAGGATATTACGGGCAGA
TATTCGATCGGTTCGCTTCTGAAAAAgaaagtgacgtcatcaaattatgc
GATGATAAGGGCTGGTTTACATGTCAAGGTGCTTTTGATATGAAGGATTG
TGAGCGAGTGCATCGAATCAACCCTTATGCTTCGAAAGATGCACGTGTCT
TGTTTAGCACGTGGAACCTCGATCACAGAACTAAATTAAAAAATCCAAAC
CCAAAAGAcgaaaaattgacgtcactcAAAAAGCAAAGATGGGAGACGAA
GAGAACGAGCAAGCGGCAGCCAAAGTCGAGATTTTCCTCCAAACAGAAGA
CGATCAAGTGGCCGTTCAAATCGAAGAAGTGGCCGATGAAGAGGACGGTG
AAGGCGGAGAACCGGCCGCAAAACGGCCTCGAAAGCCTAAGACCTTCACC
AAAGAGTTGGGCCTGTGGACGGACGAATCTACAGCTATAATGTGTGGATT
ATGGCAGGTGGAAGAATTGTTATACAATGGCAACCATCCACGACACATGT
CGAAGAAACATCGCGACCGATCCATCAGAACCATCGTTGACGGGCTGGCC
AAAGAAGGAATTGATATGACGGAAGATCAGGTGGTCGCCAAACAGAGTTC
CTTACGCGCTTATTTCTCTGGACAAATCAACAAACAAAAGCGTGAAAAAC
TAAAAGGAATCGACTACGTTTCTAAATGGAGACATTTTCGTGATTGTTAT
TTCCTCGAAGAGTACATTGTTCCTCGAAATAAAGACCTTGAAGGAATCgt
tattgatgacgtcactcaggTGCTTGAAGAATCCATCCCCTTGGCCACAC
CTAAACGTGGTGCAGCCAATGGCAAGAGGAATTCAACGCCCGGCTCCGCC
AAACGTTTACCGCCCATTCAAACTTTATCGCCCATGAAGCGTGAGAAAAC
TGCGGACGAAGCATTTTTGGAAATGATGCAAAAAATTTTGACGAACATTC
CTGAAGGAGAGATAAAAGACATGTTAAAGCTGAAGATACATCAGGAGTGT
TTGGAAGCTAAATATAAAGTGTTGAATGGGAACGTGTGACACGAGCCTTA
AGTGGGTCGATCGAAAACACGGATTTCACTTGAGGCGTCTGTTTGTTGAG
CGAGCGAGCAAAGCAACATTCTTGCCTTTCCAAACATTTTGTATTGGTTA
ACTTTTATTGACttctttgtaaatatttttaactaACGTCTTAAAGATTC
TGATGATATTCAAATATTGGAACTGgtgaaaatcttttgaattCTCGTGT
TCAGTCCATGGCATTTGTGACCTGGAACTCGATATTAGTTCATTGAGAGG
TTTTTTAACAAAATGTTTTATTCCAAGATTATTCAAGACTTTCActgaag
aaattttcattaaaatagttttcattttgattttgatattttctctgTAA
ACAACACAAGTAAGTCAAGCggctttctcaagcaagaaaaatgaagattt
gcC
Run BLAST on NCBI

protein sequence of TCONS_00045983-protein

>TCONS_00045983-protein ID=TCONS_00045983-protein|Name=TCONS_00045983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MEFIRRMLGMVEYKPYKVQDCFGKKRVGLTASNFKDLKNKAKLKLNLENV
DSVYLEDGTEVEDDSYLLSLPTQTVLIVLQIGEVWEGYISYLKMASNKII
ENVAMRTLTINKIQELLLDPESPELSLIMDFVHTIHSNLDAEHIEDDPDW
FEGVASNYKNKTHVMRDSAKNRIRGYLAKTKDFASSTKMPGKKVRVEFTN
IIDQFQNELKERGYYGQIFDRFASEKESDVIKLCDDKGWFTCQGAFDMKD
CERVHRINPYASKDARVLFSTWNLDHRTKLKNPNPKDEKLTSLKKQRWET
KRTSKRQPKSRFSSKQKTIKWPFKSKKWPMKRTVKAENRPQNGLESLRPS
PKSWACGRTNLQL
Run BLAST on NCBI

transcript from alignment at scaffold_105:221337..238261+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045983 ID=TCONS_00045983|Name=TCONS_00045983|organism=Clytia hemisphaerica|type=transcript|length=16925bp|location=Sequence derived from alignment at scaffold_105:221337..238261+ (Clytia hemisphaerica)
GTTTTCTTGAGTTTCTGGTACAAATTCATTCTTCTATTTACTTTATATTA
GAATTTTCTCAATTAGAATACTCAGAACCTCTTTCTTCTTAATTGTTTAT
GGAATTTATTCGTCGAATGTTAGGTATGGTCGAGTATAAGCCATACAAAG
TTCAAGATTGTTTTGGGAAAAAGCGTGTTGGTCTAACAGCATCCAACTTC
AAAGacctcaaaaacaaagcaaaattaAAGTTAAATTTGGAGAACGTAGA
TTCAGTATATTTAGAGGATGGAACTGAAGTTGAGGATGACTCTTATCTTC
TTTCTTTACCGACTCAAACTGTTCTTATTGTTTTACAAATTGGTGAAGTT
TGGGAAGGGTGTAAGTATTTATACTTCCTTTATCAATAAGAAATCTTAGG
TTActgtgaaaaagaatgcgggtattatattttgatttttcccatgATAG
ATATAGTACCagctgatgcaagttaccggACTTCACAGtaaaggccaaaa
aaaaaagtagtcttgtttccggaaatgcgggtgacgaaaaaaaaactcac
CCGGGCGgccgcaaaaaatttttttcttcacatttttagatttttcttac
actcttgatttttttctctttctatttaataatataaacaaaaagcAGTT
GTTAGAGAACAAACAACGAACGAAAATAAAAGAGAAGAGGAAATCATTTA
TATTTACGATTGACGTCACAAATATTATACAATACTAGTATTTAAGAACG
TTCGTTCGTCTTTGCTGTATATTATTTACTCTGTTACAAAACTTTTGTGT
TTTCTTGAGAAGACGTCTTGCTTTTTGAGCCTAGTTGTCTGAAAtattca
gtttgaaaaaaaatattttttttctgacagcacaaaaaaaaaaaattatt
ttttgcggccgggtgactttcaaaaataagttcacccggccgatttccgg
aaacaagagtacttttttttttggcctaaGCCGGGTGGGAgccaaataga
ccttttgctaagCTGTaggatgttttgattttctggatgaattttagcca
aaaaaatgttaaaaagggttttttgcaaacttttctTCTCTGAAATACAA
AACCTCACTGATTTCAAATActgttgttttgtataagattcccattgcCG
CACTAAGACTCCTTTTGCCACTTTACTAGCAGAAAACACCAAGACTTcag
gtagttgaaaaataagctttGGAAAATTAAGTTAGGCAGTTTCatgagta
aacacaagattctctgtacctttagaaacaaacccttttCTATCTCATGC
TGCGGAAAGATTCCAGAGAAGTGACAATAATCTTAGTgtggaaatgggaa
tcttataaaaaagaaattctgaTTTTCCATATCTCTTTTAAATCAAAAGC
TGTAAACCCTTGCAATAGGTTCattcagtcagggaaatccctcaattgca
gtagtaattttttactgcaattgcggtataaacgtcacttttacattttt
catataccgtcaactgctccaacttgggacgagtggtcgcaacatgggac
ttgttgatatctggcctgtatttttacttactgttaaatcactttgacaa
caaatttgttttgatacttccacCAAGTTTGTCAATCACACTTCTTCTGT
TATTCATATATCACAAAAATAGATATGTCTAGAAAAACTGCATCTGACAA
AAGTAATTAAAATTAACCATTTCACGTCATCTCTTTTAAAAATGTCTTGC
TCCCTAGGGCTGAAAATACGACGCTagattttatggatttttgtaGATAT
CTGTGTTGCAGagcgcgtgtgttccactacagatttttttcatattttga
tttagaagcctactcggtgcgaaagagaaatcgtgtattttttaatacac
agtttattaaactcaaatcaaatgactttggaggttcggtgaaatggtgg
tggaatggctATCCCATGTtgtgtcagatagtcccaagttggagcagttg
acggtaccgcaattgcagtatatttaagaaacagaattcaagattcaaga
gGAAAACAgacaatttttgtacataattgatcataCTAACACCAAAACCT
CTCTAGGACATTACGAAAACtattttccagcttttccaaaaatagtaaCC
CACATATAGCTTGTTTCaccatatttttaaattccGTAACGATTTTTTAT
GAACACGGTtgcattttttgatatttttatgtgtaaagaaggtaagtgtc
aagagaaaagtttgctcgctgtttttgattTAATTCCCACGTCTCAGATG
CAATTAAAGTATAAGGCCCTAGGAATAAACACAAAAAAGGCAGACTAAGG
AGGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCACCCAAA
TCCAAAGAATAACATTAAAAGGAGGGTAAAGAAATTAATCTGAGGAAATT
ATAGACACATAATGACATTAGGTAGGTTGCAAATAGTGATGTAATAATTT
TACCTTGGCCAAGTTAGAATTAAACTTTGAAATATCTTGGTCAGAGATTT
GAGATACCTAAGATAGCAATCCCTAGACCGTCTACCCACAATGTGTATCA
TTGAGTCAGACACACATGCGGAGAGGGCAGCGGAGGCTCCACCCATGCAA
AAACTTAGGGTATTTAAACAGTGTTCAAGAGGAAGGAGCNNNNNNNNNNN
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NNTAACCGGCAGCCGAAATATACTATTTCATAGCCGCCTCGGTGCGGTGG
CGGGATGTACTTCATTCGACTTGGAATTAACCTGAGCTAAGGTTTAgctc
caagattttttgaaatttcgacattaaaaaaaagtcagttttttctcgac
aaacctgtatactttttatTGGTGCACCGGGTATGTAGccgttataagcc
tttgtaggctaacCACAAATGAAAACTACTGCAATTAAAGTATACCGCaa
tgagggatttccctgactgtcatttcaaccatttttatcaattttctgcc
aagtttgaaaaatctgaatacAGTATAATGGctcccaaaacggaggtttt
gcCTTAAAGAGccatgtttttactttttttaaacctAAGAAAACTTCAGA
TTCAAAATCCTAACACATTTTTATTGggtctgaaaaaagaaaaataccaa
aatgtcatttttaacatggctaattttcttcttccttttttttcgaaaat
ccctTTTTCTAGACTAAAACCGTCAAAAGTCAAACAAGATTGGAATTAAA
TGATATGTACGGACGTACGGATAATGGGTCCTAGGACCTTTTAGTGCGAT
ATTTATAGATAgatcgtcgcatcaaaataagaaagccttaagtccatttt
tgtagttttgagaaaatcaagtttaaaggtttgaaatgGCTNNNNNNNNN
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aaattcgataaaaaatggggtgtaaagcatcggtatggtcataactcaat
ttttgaaaaaatggacttaaggctttcttattttgatgcgacgagaTAGT
TAAGCCCTAAAAACTCTGGAAAATATAAACATAATACCAACtaagaaaat
tcgaaatatttcacgataaaattaaaattagagACGAAAATCTAATGATT
TTATCGTGTCATTAATTTCTGACATATTTAAGTGATGtgtttttaacaat
ttcaatttaattgaatGGACGTTTTGGGGACCACTaacctccgttttgac
aaccatTTGTATGAAGATAAAGAGAGCATATATTTCTCAAGAGCAATGTT
TACAAACTGTTGTTTACAAACTGCCAATTTCTTCTTAAAATTATGTGGAC
ACcctatatttaaaaaaactttaagcgCCCGTTCATGCTATATTATAATA
AAGCCATACATTTCTATTTCTGACTTTTTTAAGATGTAAAGCATTGCCTT
CATACCTATTGATAGTAATTTGATGTCGGTGCTATGCTTTTTGATTAAGA
TATTTCGAAGAAACTAAACCTTGGTTTTAAgggccattagaaaaatatga
ctcaactttgactgaaaaaaaatcatacaaaaatctttatattaagaaaa
ttatcttttgggaataaaaataagaaaaaatttaacGTTCCTTCCCTATT
TTCTGAATTCACTAGAAAGATTTCAATTTGGATAGACATTTTGGGAGCCA
CATACATACTGTACCAGACTGTACACAtttgaaatattcaaagttttaga
aaattataaaattgaaatttctaatCAAGTAgcaaaaaatttactttttc
caTCAATCCGCATAAAATGATCTTatacttttaattattttcttcttctc
aAGAGCAATGTTTACAAACTGTTGTTTACAAACTGCCAATTTCTTCTTAA
AGTTATGTGGACACcctatatttaaaaaaattttaagcgCCCGTTCATGC
TATATTATAATAAAGCCAtacatttctatttctatttctatccatttatt
tgcataagcctaaaaaagctaacatcgcaaatatttaacaaaaacttGTT
TATATAcaccattggaaagatattttcaaggaGAATCATCTAAAAGATTG
AAATATTTAAgacttgaaaattgaaaaaagaagatttttcccCTGCTTCA
AGAATCATGTAATTTGCCTTTTTAAGTATTTGAACCTTGCTTTTCAAAAC
TGCACTCAGAAAAGCAAAGTATCCACATATTTTTCTTTGAGACAgtcttt
taaattatttttttttcgggGGAATTTCACTCAACAAACCAAATCATTTG
AAACTCTGTCCTGTTATTGTTTCCAGACATCAGTTACTTGAAGATGGCAA
GCAACAAGATCATCGAAAACGTTGCCATGAGAACGCTCACAATCAACAAA
ATTCAAGAACTTCTCTTGGATCCAGAATCTCCAGAACTCTCCCTCATCAT
GGATTTCGTCCATACTATTCACTCCAACCTCGATGCAGAACATATTGAGG
ATGATCCAGACTGGTTTGAAGGTGTTGCATCCaattacaaaaacaaaaca
cacgTTATGAGAGATTCTGCTAAAAATCGCATTCGTGGATATTTGGCAAA
AACTAAAGATTTCGCAAGCTCCACTGTAAGGTTTTCGATTATTCAAAtgc
attttaatgttttttagtCTGTATTGCGAATGTTCACTATCTTTAACCTT
TTAAGTTTAAATAATATATTCTCAATGagatttaatgtttttttgtatCA
TTTCTCTTGATTCCTGGTGCATTTGATAATTGATGTGACGAAATTGAATA
CAGAGATGAATACCAACGGttattactctcgggtacctaatagccgggtt
tggaataagcagggggttggaaaaaatctcaaaatttgataagcgggggg
gggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgggggttggaaaaaaattcaaaatttaaaaag
ggggggggggggtcggaataaaaatgtcctgggtggaaaatgttcgaaaa
ggaggctaatacagcagaattagggcaaaagggggaactttcaaaaaatt
ttcctaaaaatcaataagcggaggggggttggaataagaatgtcctggat
ggaaaattttcgaaaaattaattagcagcctcctggctattaggtacccg
agagtatacgCTATTTATCGGCAAAATAAGGGAACTCTCGTTTTGACAGC
TGGAAATATTTCTGAAAATTAGTAGTCAGGGATCCTTGTAAGATCCGTTT
GTTGGAAACAAGATCAGGAAATTAACAAAGAGAGGGTGTCGTCTATTAGG
CCTATATAGTAAGTTGACAACAAATCGGCGTTGTTCTAATggacaaatta
tttttttagaaaatgccGGGAAAGAAAGTTCGAGTGGAATTCACCAACAT
CATCGATCAATTTCAAAACGAATTAAAAGAGAGAGGATATTACGGGCAGA
TATTCGATCGGTTCGCTTCTGAAAAAgaaagtgacgtcatcaaattatgc
GATGATAAGGGCTGGTTTACATGTCAAGGTGCTTTTGATATGAAGGATTG
TGAGCGAGTGCATCGAATCAACCCTTATGCTTCGAAAGATGCACGTGTCT
TGTTTAGCACGTGGAACCTCGATCACAGGTCTGTTCCATAATAGTCATAT
TTTACTCCGTTTTCATGAAATAAGGGAACGCGTTTCCATTACCTTATATA
CATAGCGTCATCCTGGGTTTAGGTCctaggcaaaaattaggtcccccctg
agttttaagtccccccaaagatttatgaattttttgttagcccccaggac
ttttgaccctagacactttcaaaaaattgatccagtaaaaaagggttttc
taATGTAAATTGTGTTCAGTTCaaagtttaagataaaatattttgcacac
tttctaaaaaattttcagattcatgagcttcaatttgagtaattgaagct
aCTATTAAGCTAgtattaagctgaattattttagcccccacgttaagtga
tgagattttaacTCCCNaaaatattttgcacactttctaaaaatttttca
gattcatgagcttcaatttgagtaattgaagccaactactattaagctga
attattttagcccccacgttttaagtgatgagattttagctcccccaagt
acataggtcccccaaaaaagtggtggtacttccagccccctccttttttg
ggaaaaatttagggTGTAGCCCTCCCCCCCCCAACCAGtagggggctgac
gctatgacATATTCTTTACATACGCCAATTACACTTGAAACCTTCACTTT
TGCTTCTTTGTGAAACGTATTTCTATCCTAGTCTATGGAATCTTGAAAAC
ACAAAAATCTgtgaaaatttggatttttggacctatcccggtgggtggag
gtcctttaaattaaccgacgttcgtttgtttgttcgtccgtccgtccgtc
cgtccgtccgtccgtccgtccgtccgtccgttcgtccgtccgttcgtctg
ttaccagcttttctcgggattggctcattagtttttctgattttttgcac
aatgatgcaaaatggtgattcgCCAAAAGTGCCTGAAAatggggtttttt
ggactttgtttgtgaagttgcttcattagttttttctaattttttagaCT
GCTCACTACATATTCTTACTCTtatgctatttgtcctatttttatctgat
tctcatcatcaggtaggtccattcagcatgctTGACCCCCGGCATGCgaa
tcgaattgagggggccaaaaaaaaaatgtcgacttttcatccttatttca
cccctctaaaggGTATATATAagcttttttaaaaagtgaaaataaattaC
TTTGTAAAATATTGGGGGGCAtggcatgttgcttgtttagcCTGGTTTAG
ccttaatttcatttcatttaaggGACCCAGCCaaacaatattttaaattt
tggctaCTTTTCTGTCTCTGATTTCTTAGGATTGAAAAATCGCGCGAGAT
TTTACCACGGCTGTTGGAATCGATCATCGAATGTCCGAAGACTAAACAGG
TCAACTGGAAATATTTCTTTGAACTTCTGTTTACTGTGCAGAACTTGAAG
CTTGTTGATATACGTTGTCATAAGAAGGAAAAACACACGGCGTGTGTTGT
CGACCGCCGTAAAGTTTACGCATTACGTAAGAAATAAGTGAATGTGATTT
CTGTTGATTTAGGATGTATATGTAGTTCCTCGTCTGCTAGAGAGTGCAAG
AAAGTAATTTTTACGAGAACAAGtgtattttcaaataattattttatatc
TGCATGCATTTTCCTTTGCAGTGACCTTATGATTACATTTCCCCCAACTT
TTATAACATATTATCTTTCTCGTAAAATTGCTTACTACAAAAACCATGCC
ATACATGATAAAAGGGGTTATATTAAAACAATATTCCTCTTTTTTCATGT
TATCATAAATCATCGCTTTGAAAGAGAAGATTATATTGTCGCTATAGAAA
CATGTTATAACACGCATGGCTAATTACAGCATATTACGTATTATTTATTC
ACGAAAACCTCTACACGGGAGAGTGATTTCTTTTGTTCGAGATAAACTAA
TGGGCTGTTTGGAACTCCATCGCAGAAGTTTTGTATTACGTTATCATAAT
AAAGTGTGTTATTTGAGATACAAAAAGAGAATTTCTCTATTTGACGAAAA
AGATAAGACGACTTTTGTGTTATGCGAAGATACGTGTTGTGTGTGAGTTT
CTCTGCTCTATGTTACGTTTACTGTATATCATAAATTGTTGAAACTATAA
GATGaaaagtaaaacttttttaGAATCATTTTTTTATACTCCTTTATCTG
TTTATGGGGAACATTTTTTAtcctttcaaatttttgtacataattgttGT
ATATATTAGGAATTTAAACATAAATTTGTAgcattttggaagaaactatA
GTATATAAGCTCAAAATGTCATCAGTAAAACGGATAATATATGGAatgca
tggcgttctaaatcttaCGTTTTGATCGAATGATATTATTGATTTATTAT
AACTTTCATATATAAGAAAGATATTTAAATCCATACAAAATTCCAGGGGT
CTTCCAGTGGACTCCCGACCTCATGATTGCTTTAAAGCATCCAACCTTGC
AAAGTCTTGTCCCCAAATTTTTAACGCCTTGCGAAGGTCACTCACAACAC
AACTGCTATTTCTTCCTTTTCTCTCATAGCAATAGTCATCTTCAATCTAA
CCAATTACTCACAATTATTTTACAGAACTAAATTAAAAAATCCAAACCCA
AAAGAcgaaaaattgacgtcactcAAAAAGCAAAGATGGGAGACGAAGAG
AACGAGCAAGCGGCAGCCAAAGTCGAGATTTTCCTCCAAACAGAAGACGA
TCAAGTGTGAGTCACAAATTCATTTTAAACAACACGCCCTAACACGCCCC
TTTCGTTCACCCGTGTCCCCTGATTGGTTATGGTTTACTGTGGCCATTTC
TTGACGATTGAATATTGTCAACTTTCTCTAATTctaatttttctataatt
cgaactaaaatattaagTGGTGTAATTTACTCtgttattcaaatctttct
ctaattcgaataaaatttttgGTGCCTTTAATATGGAATTAATTTTACCT
CGACACTTAATAACCTAATGATAACTAACAAACCTTAATAACCTCTTAAC
ATTCTTTAAAgatatgtttatttttttccagGGCCGTTCAAATCGAAGAA
GTGGCCGATGAAGAGGACGGTGAAGGCGGAGAACCGGCCGCAAAACGGCC
TCGAAAGCCTAAGACCTTCACCAAAGAGTTGGGCCTGTGGACGGACGAAT
CTACAGCTATAATGTGTGGATTATGGCAGGTGGAAGAATTGTTATACAAT
GGCAACCATCCACGACACATGTCGAAGAAACATCGCGACCGATCCATCAG
AACCATCGTTGACGGGCTGGCCAAAGAAGGAATTGATATGACGGAAGATC
AGGTGGTCGCCAAACAGAGTTCCTTACGCGCTTATTTCTCTGGACAAATC
AACAAACAAAAGCGTGAAAAACTAAAAGGAATCGACTACGTTTCTAAATG
GAGACATTTTCGTGATTGTTATTTCCTCGAAGAGTACATTGTTCCTCGAA
ATAAAGACCTTGAAGGAATCgttattgatgacgtcactcaggTGCTTGAA
GAATCCATCCCCTTGGCCACACCTAAACGTGGTGCAGCCAATGGCAAGAG
GAATTCAACGCCCGGCTCCGCCAAACGTTTACCGCCCATTCAAACTTTAT
CGCCCATGAAGCGTGAGAAAACTGCGGACGAAGCATTTTTGGAAATGATG
CAAAAAATTTTGACGAACATTCCTGAAGGAGAGATAAAAGACATGTTAAA
GCTGAAGATACATCAGGAGTGTTTGGAAGCTAAATATAAAGTGTTGAATG
GGAACGTGTGACACGAGCCTTAAGTGGGTCGATCGAAAACACGGATTTCA
CTTGAGGCGTCTGTTTGTTGAGCGAGCGAGCAAAGCAACATTCTTGCCTT
TCCAAACATTTTGTATTGGTTAACTTTTATTGACttctttgtaaatattt
ttaactaACGTCTTAAAGATTCTGATGATATTCAAATATTGGAACTGgtg
aaaatcttttgaattCTCGTGTTCAGTCCATGGCATTTGTGACCTGGAAC
TCGATATTAGTTCATTGAGAGGTTTTTTAACAAAATGTTTTATTCCAAGA
TTATTCAAGACTTTCActgaagaaattttcattaaaatagttttcatttt
gattttgatattttctctgTAAACAACACAAGTAAGTCAAGCggctttct
caagcaagaaaaatgaagatttgcC

Coding sequence (CDS) from alignment at scaffold_105:221337..238261+

>TCONS_00045983 ID=TCONS_00045983|Name=TCONS_00045983|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_105:221337..238261+ (Clytia hemisphaerica)
ATGGAATTTATTCGTCGAATGTTAGGTATGGTCGAGTATAAGCCATACAA
AGTTCAAGATTGTTTTGGGAAAAAGCGTGTTGGTCTAACAGCATCCAACT
TCAAAGacctcaaaaacaaagcaaaattaAAGTTAAATTTGGAGAACGTA
GATTCAGTATATTTAGAGGATGGAACTGAAGTTGAGGATGACTCTTATCT
TCTTTCTTTACCGACTCAAACTGTTCTTATTGTTTTACAAATTGGTGAAG
TTTGGGAAGGGTACATCAGTTACTTGAAGATGGCAAGCAACAAGATCATC
GAAAACGTTGCCATGAGAACGCTCACAATCAACAAAATTCAAGAACTTCT
CTTGGATCCAGAATCTCCAGAACTCTCCCTCATCATGGATTTCGTCCATA
CTATTCACTCCAACCTCGATGCAGAACATATTGAGGATGATCCAGACTGG
TTTGAAGGTGTTGCATCCaattacaaaaacaaaacacacgTTATGAGAGA
TTCTGCTAAAAATCGCATTCGTGGATATTTGGCAAAAACTAAAGATTTCG
CAAGCTCCACTaaaatgccGGGAAAGAAAGTTCGAGTGGAATTCACCAAC
ATCATCGATCAATTTCAAAACGAATTAAAAGAGAGAGGATATTACGGGCA
GATATTCGATCGGTTCGCTTCTGAAAAAgaaagtgacgtcatcaaattat
gcGATGATAAGGGCTGGTTTACATGTCAAGGTGCTTTTGATATGAAGGAT
TGTGAGCGAGTGCATCGAATCAACCCTTATGCTTCGAAAGATGCACGTGT
CTTGTTTAGCACGTGGAACCTCGATCACAGAACTAAATTAAAAAATCCAA
ACCCAAAAGAcgaaaaattgacgtcactcAAAAAGCAAAGATGGGAGACG
AAGAGAACGAGCAAGCGGCAGCCAAAGTCGAGATTTTCCTCCAAACAGAA
GACGATCAAGTGGCCGTTCAAATCGAAGAAGTGGCCGATGAAGAGGACGG
TGAAGGCGGAGAACCGGCCGCAAAACGGCCTCGAAAGCCTAAGACCTTCA
CCAAAGAGTTGGGCCTGTGGACGGACGAATCTACAGCTATAAATGGAATT
TATTCGTCGAATGTTAGGTATGGTCGAGTATAAGCCATACAAAGTTCAAG
ATTGTTTTGGGAAAAAGCGTGTTGGTCTAACAGCATCCAACTTCAAAGac
ctcaaaaacaaagcaaaattaAAGTTAAATTTGGAGAACGTAGATTCAGT
ATATTTAGAGGATGGAACTGAAGTTGAGGATGACTCTTATCTTCTTTCTT
TACCGACTCAAACTGTTCTTATTGTTTTACAAATTGGTGAAGTTTGGGAA
GGGTACATCAGTTACTTGAAGATGGCAAGCAACAAGATCATCGAAAACGT
TGCCATGAGAACGCTCACAATCAACAAAATTCAAGAACTTCTCTTGGATC
CAGAATCTCCAGAACTCTCCCTCATCATGGATTTCGTCCATACTATTCAC
TCCAACCTCGATGCAGAACATATTGAGGATGATCCAGACTGGTTTGAAGG
TGTTGCATCCaattacaaaaacaaaacacacgTTATGAGAGATTCTGCTA
AAAATCGCATTCGTGGATATTTGGCAAAAACTAAAGATTTCGCAAGCTCC
ACTaaaatgccGGGAAAGAAAGTTCGAGTGGAATTCACCAACATCATCGA
TCAATTTCAAAACGAATTAAAAGAGAGAGGATATTACGGGCAGATATTCG
ATCGGTTCGCTTCTGAAAAAgaaagtgacgtcatcaaattatgcGATGAT
AAGGGCTGGTTTACATGTCAAGGTGCTTTTGATATGAAGGATTGTGAGCG
AGTGCATCGAATCAACCCTTATGCTTCGAAAGATGCACGTGTCTTGTTTA
GCACGTGGAACCTCGATCACAGAACTAAATTAAAAAATCCAAACCCAAAA
GAcgaaaaattgacgtcactcAAAAAGCAAAGATGGGAGACGAAGAGAAC
GAGCAAGCGGCAGCCAAAGTCGAGATTTTCCTCCAAACAGAAGACGATCA
AGTGGCCGTTCAAATCGAAGAAGTGGCCGATGAAGAGGACGGTGAAGGCG
GAGAACCGGCCGCAAAACGGCCTCGAAAGCCTAAGACCTTCACCAAAGAG
TTGGGCCTGTGGACGGACGAATCTACAGCTATAAATGGAATTTATTCGTC
GAATGTTAGGTATGGTCGAGTATAAGCCATACAAAGTTCAAGATTGTTTT
GGGAAAAAGCGTGTTGGTCTAACAGCATCCAACTTCAAAGacctcaaaaa
caaagcaaaattaAAGTTAAATTTGGAGAACGTAGATTCAGTATATTTAG
AGGATGGAACTGAAGTTGAGGATGACTCTTATCTTCTTTCTTTACCGACT
CAAACTGTTCTTATTGTTTTACAAATTGGTGAAGTTTGGGAAGGGTACAT
CAGTTACTTGAAGATGGCAAGCAACAAGATCATCGAAAACGTTGCCATGA
GAACGCTCACAATCAACAAAATTCAAGAACTTCTCTTGGATCCAGAATCT
CCAGAACTCTCCCTCATCATGGATTTCGTCCATACTATTCACTCCAACCT
CGATGCAGAACATATTGAGGATGATCCAGACTGGTTTGAAGGTGTTGCAT
CCaattacaaaaacaaaacacacgTTATGAGAGATTCTGCTAAAAATCGC
ATTCGTGGATATTTGGCAAAAACTAAAGATTTCGCAAGCTCCACTaaaat
gccGGGAAAGAAAGTTCGAGTGGAATTCACCAACATCATCGATCAATTTC
AAAACGAATTAAAAGAGAGAGGATATTACGGGCAGATATTCGATCGGTTC
GCTTCTGAAAAAgaaagtgacgtcatcaaattatgcGATGATAAGGGCTG
GTTTACATGTCAAGGTGCTTTTGATATGAAGGATTGTGAGCGAGTGCATC
GAATCAACCCTTATGCTTCGAAAGATGCACGTGTCTTGTTTAGCACGTGG
AACCTCGATCACAGAACTAAATTAAAAAATCCAAACCCAAAAGAcgaaaa
attgacgtcactcAAAAAGCAAAGATGGGAGACGAAGAGAACGAGCAAGC
GGCAGCCAAAGTCGAGATTTTCCTCCAAACAGAAGACGATCAAGTGGCCG
TTCAAATCGAAGAAGTGGCCGATGAAGAGGACGGTGAAGGCGGAGAACCG
GCCGCAAAACGGCCTCGAAAGCCTAAGACCTTCACCAAAGAGTTGGGCCT
GTGGACGGACGAATCTACAGCTATAAATGGAATTTATTCGTCGAATGTTA
GGTATGGTCGAGTATAAGCCATACAAAGTTCAAGATTGTTTTGGGAAAAA
GCGTGTTGGTCTAACAGCATCCAACTTCAAAGacctcaaaaacaaagcaa
aattaAAGTTAAATTTGGAGAACGTAGATTCAGTATATTTAGAGGATGGA
ACTGAAGTTGAGGATGACTCTTATCTTCTTTCTTTACCGACTCAAACTGT
TCTTATTGTTTTACAAATTGGTGAAGTTTGGGAAGGGTACATCAGTTACT
TGAAGATGGCAAGCAACAAGATCATCGAAAACGTTGCCATGAGAACGCTC
ACAATCAACAAAATTCAAGAACTTCTCTTGGATCCAGAATCTCCAGAACT
CTCCCTCATCATGGATTTCGTCCATACTATTCACTCCAACCTCGATGCAG
AACATATTGAGGATGATCCAGACTGGTTTGAAGGTGTTGCATCCaattac
aaaaacaaaacacacgTTATGAGAGATTCTGCTAAAAATCGCATTCGTGG
ATATTTGGCAAAAACTAAAGATTTCGCAAGCTCCACTaaaatgccGGGAA
AGAAAGTTCGAGTGGAATTCACCAACATCATCGATCAATTTCAAAACGAA
TTAAAAGAGAGAGGATATTACGGGCAGATATTCGATCGGTTCGCTTCTGA
AAAAgaaagtgacgtcatcaaattatgcGATGATAAGGGCTGGTTTACAT
GTCAAGGTGCTTTTGATATGAAGGATTGTGAGCGAGTGCATCGAATCAAC
CCTTATGCTTCGAAAGATGCACGTGTCTTGTTTAGCACGTGGAACCTCGA
TCACAGAACTAAATTAAAAAATCCAAACCCAAAAGAcgaaaaattgacgt
cactcAAAAAGCAAAGATGGGAGACGAAGAGAACGAGCAAGCGGCAGCCA
AAGTCGAGATTTTCCTCCAAACAGAAGACGATCAAGTGGCCGTTCAAATC
GAAGAAGTGGCCGATGAAGAGGACGGTGAAGGCGGAGAACCGGCCGCAAA
ACGGCCTCGAAAGCCTAAGACCTTCACCAAAGAGTTGGGCCTGTGGACGG
ACGAATCTACAGCTATAAATGGAATTTATTCGTCGAATGTTAGGTATGGT
CGAGTATAAGCCATACAAAGTTCAAGATTGTTTTGGGAAAAAGCGTGTTG
GTCTAACAGCATCCAACTTCAAAGacctcaaaaacaaagcaaaattaAAG
TTAAATTTGGAGAACGTAGATTCAGTATATTTAGAGGATGGAACTGAAGT
TGAGGATGACTCTTATCTTCTTTCTTTACCGACTCAAACTGTTCTTATTG
TTTTACAAATTGGTGAAGTTTGGGAAGGGTACATCAGTTACTTGAAGATG
GCAAGCAACAAGATCATCGAAAACGTTGCCATGAGAACGCTCACAATCAA
CAAAATTCAAGAACTTCTCTTGGATCCAGAATCTCCAGAACTCTCCCTCA
TCATGGATTTCGTCCATACTATTCACTCCAACCTCGATGCAGAACATATT
GAGGATGATCCAGACTGGTTTGAAGGTGTTGCATCCaattacaaaaacaa
aacacacgTTATGAGAGATTCTGCTAAAAATCGCATTCGTGGATATTTGG
CAAAAACTAAAGATTTCGCAAGCTCCACTaaaatgccGGGAAAGAAAGTT
CGAGTGGAATTCACCAACATCATCGATCAATTTCAAAACGAATTAAAAGA
GAGAGGATATTACGGGCAGATATTCGATCGGTTCGCTTCTGAAAAAgaaa
gtgacgtcatcaaattatgcGATGATAAGGGCTGGTTTACATGTCAAGGT
GCTTTTGATATGAAGGATTGTGAGCGAGTGCATCGAATCAACCCTTATGC
TTCGAAAGATGCACGTGTCTTGTTTAGCACGTGGAACCTCGATCACAGAA
CTAAATTAAAAAATCCAAACCCAAAAGAcgaaaaattgacgtcactcAAA
AAGCAAAGATGGGAGACGAAGAGAACGAGCAAGCGGCAGCCAAAGTCGAG
ATTTTCCTCCAAACAGAAGACGATCAAGTGGCCGTTCAAATCGAAGAAGT
GGCCGATGAAGAGGACGGTGAAGGCGGAGAACCGGCCGCAAAACGGCCTC
GAAAGCCTAAGACCTTCACCAAAGAGTTGGGCCTGTGGACGGACGAATCT
ACAGCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029391XLOC_029391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045983-exon-scaffold_105-1491911889:221337..221696TCONS_00045983-exon-scaffold_105-1491911889:221337..221696Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1510915933:221337..221696TCONS_00045983-exon-scaffold_105-1510915933:221337..221696Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1575043694:221337..221696TCONS_00045983-exon-scaffold_105-1575043694:221337..221696Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1491911889:232663..232961TCONS_00045983-exon-scaffold_105-1491911889:232663..232961Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1510915933:232663..232961TCONS_00045983-exon-scaffold_105-1510915933:232663..232961Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1575043694:232663..232961TCONS_00045983-exon-scaffold_105-1575043694:232663..232961Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1491911889:233746..234014TCONS_00045983-exon-scaffold_105-1491911889:233746..234014Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1510915933:233746..234014TCONS_00045983-exon-scaffold_105-1510915933:233746..234014Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1575043694:233746..234014TCONS_00045983-exon-scaffold_105-1575043694:233746..234014Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1491911889:236662..236792TCONS_00045983-exon-scaffold_105-1491911889:236662..236792Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1510915933:236662..236792TCONS_00045983-exon-scaffold_105-1510915933:236662..236792Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1575043694:236662..236792TCONS_00045983-exon-scaffold_105-1575043694:236662..236792Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1491911889:237118..238261TCONS_00045983-exon-scaffold_105-1491911889:237118..238261Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1510915933:237118..238261TCONS_00045983-exon-scaffold_105-1510915933:237118..238261Clytia hemisphaericaexon
TCONS_00045983-exon-scaffold_105-1575043694:237118..238261TCONS_00045983-exon-scaffold_105-1575043694:237118..238261Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045983-proteinTCONS_00045983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:221337..238261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.79685	5.18848	3.06537	2.86058	25.4145	23.7021	11.1378	13.1452	6.59402	6.89855	5.17783	4.98015	6.09999	4.0926	5.05981	5.70482	7.03887	7.3737	2.97428	2.46168	5.04998	5.61152	7.53002	6.68178	8.18822	8.39709	2.35121	1.327	3.76249	3.69357
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003508CIDE-N_dom
IPR015311Apoptosis_DFF40
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006915apoptotic process
GO:0006309apoptotic DNA fragmentation
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006309 apoptotic DNA fragmentation
biological_process GO:0006915 apoptotic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00045983 vs. Swiss-Prot (Human)
Match: DFFB (DNA fragmentation factor subunit beta OS=Homo sapiens GN=DFFB PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.341e-41
Identity = 79/221 (35.75%), Postives = 122/221 (55.20%), Query Frame = 3 
Query:  264 EDGTEVEDDSYLLSLPTQTVLIVLQIGEVWEGYISYLKMASNKIIENVAMRTLTINKIQXXXXXXXXXXXXXIMDFVHTIHSNLDAEHIEDDPDWFEGVASNYKNKTHVMRDSAKNRIRGYLAKTKDFASSTKMPGKKVRVEFTNIIDQFQNELKERGYYGQIFDRFASEKESDVIKLCDDKGWFTCQGAFDMKDCERVHRINPYASKDARVLFSTWNLDH 926
            EDGTE+ +D Y  S+P    L++L +G+ W+GY+S ++   +   E      L     Q L  +       L+ D +H +  N+ AE   +DP WFEG+ S +++K+  +R S ++RIR YL +   + S+    G + + EF  ++      L+   Y G  FDR A        +LC  +GWF+CQG FDM  C   H INPY+++++R+LFSTWNLDH
Sbjct:   50 EDGTELTED-YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQV--GLIQAAQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSCESRIRSYLREVSSYPSTV---GAEAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGS----RLCTPEGWFSCQGPFDMDSCLSRHSINPYSNRESRILFSTWNLDH 260
The following BLAST results are available for this feature:
BLAST of TCONS_00045983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DFFB9.341e-4135.75DNA fragmentation factor subunit beta OS=Homo sapi... [more]
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