TCONS_00045990 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00045990
Unique Name	TCONS_00045990
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1120

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_105:351092..361293+
coding sequence from alignment at scaffold_105:351092..361293+

transcript sequence

>TCONS_00045990 ID=TCONS_00045990|Name=TCONS_00045990|organism=Clytia hemisphaerica|type=transcript|length=1120bp
CAAGATCAAGGAAAAGAATAATCGAAGATGACGAGCGAGCAAAACGAATT
TGTGATGATCGACAGCATTCCTTTTTATTTCACACAACCTAAAGAAATTC
TCCACAAACTACAAGCTGAATTTACAGAACTTTTGAAGGGAGTTTTAGGC
GTTGACTTACTGGCGATTCATCCAGTTGGGAGTGGAGCAATCCCAGATAT
GCCAGGCACGTCAGTGATCGATCTTGCAATGTTCATGAAAAACGTTCCCC
CGACAGAAGAACAGAAAACCAAACTAAAAGAAGTCGGTATCGAAGTTTTG
TTCGATCCGGCACCTCATAGCGATCAAGACGTCCTTTTCATGTCAACGAA
TAAAGAATGCGGAATTCACTTTTTGAAGTATGATAACGAATGGGTAAAGG
GCGCTTTGGCATTCGTCCAATATCTCACACAAAATGAAGCGCCCTTCAAT
AAATACCGCCAGACGAAACTTCAAGGAGCAGCTATGCAAGGAGGTAAATC
CTCGGAATCAGGGATGGAAGAGTTCTTTAAATACAAAATGTTCAAGACAG
CAGTTGCTAAAGAACTTTTAGAGGAAGCGAAAATCTGGTCATTCGACAAA
GGGAACTGGGCAGCACCAGATTATTCAAATGTTGTCAAATCTTCTCTTTG
AAATATAAGTATTTCTTccgtattttattttattttacattttcaacGAA
ATGGGCTTTTTCAGTTTCTTGAATATATAGAGTGGAGAATATTTACCCCC
AGatattgtgacttttgacccccccggacaagcatcagttgaccccccct
ggatattcaaaattacccaaaAACCCCCAGACAAGGCtaattttatcgat
ttttcaccacccccggacactatatcctccaccccaatgtacgaacattt
tcggAAAGAGCCCATCTTTATGAAGTATAAATATCGTAGTCAAGTTTCTG
TCGTATAACAAGTAAACGATAATGGCTTATTAACGAActcatatttacat
ttttttcagttttcccGTGATCATGAAAAAAAGCTATCAAATCCATTTCC
TCTCAACAGTTTAACGGGCTTCCTTAAGTTCATATCTGTCTCATTTTCAC
ATTGGAATACTTGAATACAA

Run BLAST on NCBI

protein sequence of TCONS_00045990-protein

>TCONS_00045990-protein ID=TCONS_00045990-protein|Name=TCONS_00045990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MTSEQNEFVMIDSIPFYFTQPKEILHKLQAEFTELLKGVLGVDLLAIHPV
GSGAIPDMPGTSVIDLAMFMKNVPPTEEQKTKLKEVGIEVLFDPAPHSDQ
DVLFMSTNKECGIHFLKYDNEWVKGALAFVQYLTQNEAPFNKYRQTKLQG
AAMQGGKSSESGMEEFFKYKMFKTAVAKELLEEAKIWSFDKGNWAAPDYS
NVVKSSL

Run BLAST on NCBI

transcript from alignment at scaffold_105:351092..361293+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00045990 ID=TCONS_00045990|Name=TCONS_00045990|organism=Clytia hemisphaerica|type=transcript|length=10202bp|location=Sequence derived from alignment at scaffold_105:351092..361293+ (Clytia hemisphaerica)
CAAGATCAAGGAAAAGAATAATCGAAGATGACGAGCGAGCAAAACGAATT
TGTGATGATCGACAGCATTCCTTTTTATTTCACACAACCTAAAGAAATTC
TCCACAAACTACAAGCTGAATTTACAGAACTTTTGAAGGGAGTTTTAGGC
GTTGACTTACTGGCGATTCATCCAGTTGGGAGTGGAGCAATCCCAGGTGA
GAATCATGTGGTGATTTGTTTATGGTTGGCCTAGTATCCAATCCTGGTAG
AATTGAAACCAATTCTCTAGGGTTGGTCcatcgagtttaaagcccgaagg
gctagagtagaatctctaacccttcccaggcaagaaaaagtgaagccaat
tatttcccatccagaacgcgccgcaatcatgacgaccgGTTGTATCTAAT
GGTGTCGTATAATTTGTAACCCGGTATATACTTATGTTAGTTGCCTACTC
GGCGCACTTTGTACTTATGCACGTGTTTATACTTGAAAGACCAGTTCATG
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNAATCTCTCTACGAAGACAAGTGAG
CGAAAACAATGCATCTTTTGTAAACGAAATCACAAAGAACAATATTGTGA
TATAGTAGAGAATAAAGAAATCAGAAAGTCTATAATAATAAAGGAAAGAC
GTTGCTTTTGTTGCTTCAAGATCGGTCATTCATCAAAACAATGTCGAACG
AATATGAAATGTTTTGTGTGTAAAGGAAAACAccagggagtttctaaaca
tcgaccagaaatggcgaccacgaccagcgaccacgaccggcgaccagata
aatttgggttatcgagtttttcctctttctccacctTAGNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCTTTCTCCACC
TTAGAGTCTTTCTCctatgatcatttatttatcgaattgaagagtaaaAA
CTCACCCCTGTCTCTTCTACAGTAattataaagccacgtgcaaGACGTGT
AGAACAGCCATTttaacgctcttggagcttaaatggggtgtcaatttcta
tccatttgtattttcggcatcaaattaattagtggcaatttttttgctga
aattcatttaggaagctttatatttgatcatcagatcattattttgtcaa
aataagtcattttgacaatgtaaggacaatagaataattgatgagattga
tatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTGCCCTTCCCAGCTT
TTGcctactgacaatttctatctattcatactaaagacatctcattcagc
ataattaaaatatttggtgtaataaagtttacaggcataacacttaattg
ccctgtcgatatttttgtcaaaaagtgtcactttgtctagaaaatgactg
gtaatGTCAAAGGTCACTTTAAGTATTCTAAGCtagagtaattctcagcc
acgcgtgctcagtggttcatttgaaagccacatcaggactcgatttggat
gttctctacggtggagagagcagataaactcgataacccaaatttatctg
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNTTTGTAACCCGGTATATACTTATGTTAGTTGCCTACTC
GGCGCACTTTGTACTTATGCACGTGTTTATACTTGAAAGACCAGTTCATG
ATTATACTTTATACAACAaatggttcctttgtttttgaggactgcatttt
tcgaatctagcgatagatgttactttcaatccggcgttggTGTTAAGACC
ACGCGCAAACGTTCTGGATGGTCATTACCCGTCCAGGAGtttcgagtcta
gcccttcggattGGGAAGTCAACGGGTAGACCTCGTAGCCTCAATCTTTT
AGACGATGTTATCACCGTTAcatacagtgatagtaaaggcgggaaaatat
ggcggaagagtttcgaagaagactggcaactctaccgactgtaaactctt
ttcggtaaaaaatcccgtttgcaaattttcttcggctttgggatattttc
ttagatagtgattcgtcttagactataacttAGTCTACCTCACTCTTTGA
TTTTCCTGATGGACTCGATGAAAATTCGCGAGCGCTTAATCAGAACCAAA
CAAATCGAAACATAAGAAACGGGGTTCGAGTATTCCCCAGGGTGCCTAAT
AGGTTTTCTCGTTTTTTAATTAACGAAAATATTTAAGGTAAGGTTTTGCT
TGCTCTATTTTCAACAGTACGATTCCCATCACCCGCAGACAATAAGGGTT
CATTAGATTCGCAAATTTACGACCGCCCGTTATAAAGCACCTTTTAGAGT
AAACTTATTAGGCATTCATGGGCAAAAATGTCACCAAGGATTTTTTATAA
ACTGGATATAAAAGTAACAGagttttgccgatttctcgtgtactagctat
gtccgcagtaatgatattattgttcactcttcttccctcattaaattact
tttattgcatttcttatcgaaaatcactcatccaattcccaaaagagact
taaaacttttctgtgagagtcagattcttccacttaattgctaattataa
gtcgttatgacgtttcaaactgtgagaaagatgcaaaagacgtgttgtgt
ataagaaatttaatgttgacaccggaaaacttcaacctcaaaaaaaacaC
TTTGCCACCAcatgcctccaaaggattttcataccacagtggagccaaga
cactcaagtcttatgtatgttaatttcagctcttctggggacagtcttgg
aaagatatttccaattgaaaatcttgtgtcactataagcattttgtctga
atttcttgtctaatgatgtttttctcacattactCTTCAGAAATGTATCC
AGCTCGGAATGCTAGCCtcactttcaaactttttttctgcaaatgtacaa
aaagaaagagctagagaactttttaaaaataagactgataaaacattctt
aaaaatcagacatcttcgagccgccatgacagttgtcctttgcggacaaa
gctagaacatcaatcgttttctgaaacaatgaaaatacaatgatcgctct
ccatcgttttatgagtcgtttatccagtgtataataaatctttgatgTCA
CAGTATAAAAATCCTGTTTTGTCTTTAGATATGCCAGGCACGTCAGTGAT
CGATCTTGCAATGTTCATGAAAAACGTTCCCCCGACAGAAGAACAGAAAA
CCAAACTAAAAGAAGTCGGTATCGAAGTTTTGTTCGATCCGGCACCTCAT
AGCGATCAAGACGTCCTTTTCATGTCAACGAATAAAGAATGCGGAATTCA
CTTTTTGAAGTATGATAACGAATGGGTAAAGGGCGCTTTGGCATTCGTCC
AATATCTCACACAAAATGAAGCGCCCTTCAATAAATACCGCCAGACGAAA
CTTCAAGGAGCAGCTATGCAAGGAGGTAAATCCTCGGAATCAGGGATGGA
AGAGTTCTTTAAATACAAAATGTTCAAGACAGCAGTTGCTAAAGAACTTT
TAGAGGAAGCGAAAATCTGGTCATTCGACAAAGGGAACTGGGCAGCACCA
GATTATTCAAATGTTGTCAAATCTTCTCTTTGAAATATAAGTATTTCTTc
cgtattttattttattttacattttcaacGAAATGGGCTTTTTCAGTTTC
TTGAATATATAGAGTGGAGAATATTTACCCCCAGatattgtgacttttga
cccccccggacaagcatcagttgaccccccctggatattcaaaattaccc
aaaAACCCCCAGACAAGGCtaattttatcgatttttcaccacccccggac
actatatcctccaccccaatgtacgaacattttcggAAAGAGCCCATCTT
TATGAAGTATAAATATCGTAGTCAAGTTTCTGTCGTATAACAAGTAAACG
ATAATGGCTTATTAACGAActcatatttacatttttttcagttttcccGT
GATCATGAAAAAAAGCTATCAAATCCATTTCCTCTCAACAGTTTAACGGG
CTTCCTTAAGTTCATATCTGTCTCATTTTCACATTGGAATACTTGAATAC
AA

Coding sequence (CDS) from alignment at scaffold_105:351092..361293+

>TCONS_00045990 ID=TCONS_00045990|Name=TCONS_00045990|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_105:351092..361293+ (Clytia hemisphaerica)
ATGACGAGCGAGCAAAACGAATTTGTGATGATCGACAGCATTCCTTTTTA
TTTCACACAACCTAAAGAAATTCTCCACAAACTACAAGCTGAATTTACAG
AACTTTTGAAGGGAGTTTTAGGCGTTGACTTACTGGCGATTCATCCAGTT
GGGAGTGGAGCAATCCCAGATATGCCAGGCACGTCAGTGATCGATCTTGC
AATGTTCATGAAAAACGTTCCCCCGACAGAAGAACAGAAAACCAAACTAA
AAGAAGTCGGTATCGAAGTTTTGTTCGATCCGGCACCTCATAGCGATCAA
GACGTCCTTTTCATGTCAACGAATAAAGAATGCGGAATTCACTTTTTGAA
GTATGATAACGAATGGGTAAAGGGCGCTTTGGCATTCGTCCAATATCTCA
CACAAAATGAAGCGCCCTTCAATAAATACCGCCAGACGAAACTTCAAGGA
GCAGCTATGCAAGGAGGTAAATCCTCGGAATCAGGGATGGAAGAGTTCTT
TAAATACAAAATGTTCAAGACAGCAGTTGCTAAAGAACTTTTAGAGGAAG
CGAAAATCTGGTCATTCGACAAAGGGAACTGGGCAGCACCAGATTATTCA
AATGTTGTCAAATCTTCTCTTTGAATGACGAGCGAGCAAAACGAATTTGT
GATGATCGACAGCATTCCTTTTTATTTCACACAACCTAAAGAAATTCTCC
ACAAACTACAAGCTGAATTTACAGAACTTTTGAAGGGAGTTTTAGGCGTT
GACTTACTGGCGATTCATCCAGTTGGGAGTGGAGCAATCCCAGATATGCC
AGGCACGTCAGTGATCGATCTTGCAATGTTCATGAAAAACGTTCCCCCGA
CAGAAGAACAGAAAACCAAACTAAAAGAAGTCGGTATCGAAGTTTTGTTC
GATCCGGCACCTCATAGCGATCAAGACGTCCTTTTCATGTCAACGAATAA
AGAATGCGGAATTCACTTTTTGAAGTATGATAACGAATGGGTAAAGGGCG
CTTTGGCATTCGTCCAATATCTCACACAAAATGAAGCGCCCTTCAATAAA
TACCGCCAGACGAAACTTCAAGGAGCAGCTATGCAAGGAGGTAAATCCTC
GGAATCAGGGATGGAAGAGTTCTTTAAATACAAAATGTTCAAGACAGCAG
TTGCTAAAGAACTTTTAGAGGAAGCGAAAATCTGGTCATTCGACAAAGGG
AACTGGGCAGCACCAGATTATTCAAATGTTGTCAAATCTTCTCTTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029393	XLOC_029393	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045990-protein	TCONS_00045990-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00045990-exon-scaffold_105-1491911889:351092..351287	TCONS_00045990-exon-scaffold_105-1491911889:351092..351287	Clytia hemisphaerica	exon
TCONS_00045990-exon-scaffold_105-1510915933:351092..351287	TCONS_00045990-exon-scaffold_105-1510915933:351092..351287	Clytia hemisphaerica	exon
TCONS_00045990-exon-scaffold_105-1575043694:351092..351287	TCONS_00045990-exon-scaffold_105-1575043694:351092..351287	Clytia hemisphaerica	exon
TCONS_00045990-exon-scaffold_105-1491911889:360370..361293	TCONS_00045990-exon-scaffold_105-1491911889:360370..361293	Clytia hemisphaerica	exon
TCONS_00045990-exon-scaffold_105-1510915933:360370..361293	TCONS_00045990-exon-scaffold_105-1510915933:360370..361293	Clytia hemisphaerica	exon
TCONS_00045990-exon-scaffold_105-1575043694:360370..361293	TCONS_00045990-exon-scaffold_105-1575043694:360370..361293	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_105	supercontig	scaffold_105:351092..361293 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124128	0.040313	0.0459408	0.141104	0	0.0459945	0.291222	0	0.250012	0.307769	0.296626	0.139053	0	0	0	0	0	0	0	0	0	0	0.14585	0.267312	0.150384	0.175914	0	0	0.184794	0.0951677

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007344	GrpB/CoaE

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00045990 vs. Swiss-Prot (Human)

BLAST of TCONS_00045990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00045990 (transcript) - C. hemisphaerica