TCONS_00045991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045991
Unique NameTCONS_00045991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045991 ID=TCONS_00045991|Name=TCONS_00045991|organism=Clytia hemisphaerica|type=transcript|length=1116bp
taatcttatatttttaaaggaaaaataacattttttgacgtaaaacaatc
tttcaaaatcTATAAAACGAGGTCTGGAATttacatttaattttttcgCT
GACCTCTTTTTTTTTGATCAAAACTTTTCGGCCAAAAGGACGAAGACTAG
CACGCGGCTTGTCAAAGATTCAGATCAGTGGTTTACTTctcgaaaaaaat
caagatggcgATGCAAAAAAGGAATAAcgtTCGTTTGCCACCAGAAGTCA
ATAGAATTCTCTACGTCAGGAATTTACCATACAAAATTACATCTGAAGAA
ATCTATGACATCTTTGGAAAATATGGTGCTCTTCGACAAGTGCGATTGGG
AGTGACAAATGAGGCACGTGGAACGGCCTACATTGTTTACGAAGATATCT
TTGATGCCAAGATGGCGTGTGATCATTTATCTGGATTCAATGTTTGTAAT
CGATATCTGATCGTCCTTTATTACCAACCCACTAAGATGTTCCAAAAGAT
GGACAAAGAGAAGAAGCAAGATCAGATCGATAAATTGAAAGAGAAATATG
GAGTGACAACAACCCCTGCACGGTAGAAGGTCGTCCGGTGTTATGTAGCC
TGTATATAATGGTAAACGATCCACGTACAACGCTGGTTGTGGAAAGAGAT
TTTTCATGTGACCAAAGTGGTTACCCGATGTGACGGAAAAGCGCAGATAC
TTTGGTTGGTTGAATGGAactcaaaaaaaacatttttcaaaaaagtaaat
ggGCAGAAtatttattaatattttttacaGTGGTTTTTGAATTCCTGATA
TGACTAGAATATTTCTATTTGAATAATTCTAGTGTGttatttgaaattaa
atttttttcacttctCCTGATCACTAATTTTTGTGGTGACGGCAGGAGTC
GAACAATTCAACGCCCAATACTCAGATCAGAAGTTGTGTATACTAAGTTT
CGAATTCATTCTATTTGAGAACAGCCAATTTCGCCCCTTAAAAGCTTTCA
TTtataatgattcaatttttaagaaaggaTTGTAAAATACTTATGGCAAT
AAATGTTAAAGCTCAATCTACACGACCACGACAATTTAGTAGTATTTAGC
TGTCACTGTTCTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00045991-protein

>TCONS_00045991-protein ID=TCONS_00045991-protein|Name=TCONS_00045991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MAMQKRNNVRLPPEVNRILYVRNLPYKITSEEIYDIFGKYGALRQVRLGV
TNEARGTAYIVYEDIFDAKMACDHLSGFNVCNRYLIVLYYQPTKMFQKMD
KEKKQDQIDKLKEKYGVTTTPAR
Run BLAST on NCBI

transcript from alignment at scaffold_105:384369..393698+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045991 ID=TCONS_00045991|Name=TCONS_00045991|organism=Clytia hemisphaerica|type=transcript|length=9330bp|location=Sequence derived from alignment at scaffold_105:384369..393698+ (Clytia hemisphaerica)
taatcttatatttttaaaggaaaaataacattttttgacgtaaaacaatc
tttcaaaatcTATAAAACGAGGTCTGGAATttacatttaattttttcgCT
GACCTCTTTTTTTTTGATCAAAACTTTTCGGCCAAAAGGACGAAGACTAG
CACGCGGCTTGTCAAAGATTCAGATCAGTGGTTTACTTctcgaaaaaaat
caagatggcgATGCAAAAAAGGAATAAcgtaagattttcatttttagacc
CTCTTTTATTAGTCATTATTTAGAGGGAGAACGAATATGTATGTTTTGTT
actacttaaatatatagatagatagactCGGCTTATTAGAATACTTTTCT
GATAACTGAAACAAATTTAgaccaaaaatcagaaaaaaatttacagcACT
ACATTAACAATTAAAGGAGAATCTTGCTTCCCAACAACTTCCCCATTTTT
TGAAGGAAATGTCATGGAATcctgttttttttgtaaaaaaggaaCTTTGT
TTTCTCTTGCAAAAACCCTCTTTTGTGAATCTCCTCACACAAAGCTCTAA
AGCAGCATTTAAATAACTTACATGGAAACCAGAAttatgattcttttttt
ttttctatttctatttggttgagttgcaggaggctttagaggcctattct
cgcaactatagacgcttactaatgagcatcccgtcagcaccatgaactga
ctacccaattcccttcacatggcatgggttgacccgggcgaaggaacgtt
cacttgccaagtgaactgcNctcacatggcatgggttgacccgggcgaag
gaacgttcacacaagtgaactgccgtgagtgggaatcgaaccctggccgc
ctgcacagaagccaaggtcgactaccactatactacgGCACCTTCAATGA
CACAATGGGTTCTACCATTTTGTGTGCGGTTTGAGTCTATTATTGATTAC
CTTTAAGGGACCCGTCcaccatattcatttgacaacttATAACGTCAAAT
TGAGGTTATCCTCTGAAACCCCCACCCCCCACAGATAACGTCAAGCGATG
TACCGATGTATACCAAAAGTTGTGTAGCCATTTTTCATATGACCCTGGGT
AACGCCCACACATGCCCGTACATTTGCCGGCGTTTGCGGGCAAAATTTTG
ACTTAGGATTTGTAACGTCGCCCGAACGCGCCCGGTCAAAGATTTCCAga
gtataaaaaaacattttcaggaACTCTAAACATAAATTTAATGATGcagt
ttaaaatgtttttggtcagtaaaatataTACTTATATCGCGCGttctgat
tggtcggagaaaaGGAAAGTGGTTTTTGCGCGTTCTGATTGGtcgaagaa
aacgaaagtggttttccTTTGTGAATCGTGCATTTTTATTGGGTGAGATA
AACTCGGTTTTAGTTTCCGACATGCTTCTAATTctaaattaaagatggcg
gcgCATGAGGGAACATGACTTTGTGAAAGTTTAAACACGAAGGAAATATG
ATTAGATTTAAAGGTTAAAACTCTTTATTTTTctcttagTTTGATAATCA
AAAGATTCTACAATGTTTTGGGAGTCTAAATATCCAaaggttttttgttt
tcaatgggAAAAAGTTATCGTGTATATATACTTTTtgatcgaaaaaatca
aaaattaagggAACAGAGACGAGGAGCGAAAATCTCATTTGCGGGCAAAA
TTTTGACTTAGAATGGCTCCGCCCGCAAATGTGCGGGAATGTGCGGGCGT
TACCCAGGGTcgttttttcatcaaagttttctcGTTCCGTCGCAAAGTCC
GTACTTGGTTGTACCCGTGCGCatatgtgttcttttaactaatgaccttt
attttaaaagaaattaaaagctccacttGGCGCTAGGTCCGTGCAGTGCT
TTAGGCGAGCCACCTTCTTTGCCCACTTGTGCGATGTGGTTCGCTCGATC
GCGCAAACAATGAcaatatgatgtaatgatatcatagcgcaaaccaatgg
gattatgcgAGCAGCAAATTTCCTTGTACTTCATacacaaatatattttc
gacagcttataaagtatagtgtggttggtggttacaaatatccgcgattt
tcacaaaaaggtatacctatgatttcttataacgtcaaacctaactaact
tttgaaaacccctcCACCCCCTCATAACcgcttgtaataattatgcattg
ccaaatttggttctccatcgatggtgacgtcacctaagcataaaaaagaa
aggatttcgtcagttttatgcatatattaatttgcgagatattctattcg
ccgcgcgagcgaacttttcgtagactagtcaaaatactttcttttacttg
cgggattgatggtaacttttcatcttcgttatttttaaaatgaagcacaa
ccgaaaataaatgaaatttcagaaagttgcgtacttccagtgagtaaacg
attctgacaattaaaaaaattgatgatgatgatttttttcggTCTTTTGT
TTGACTGAACtcaagaaaagctcaaaaaactaactttccctaaggaaacg
caggcaaaaacggggtttgtttacctccagagccCAAACgctggagagca
tcaaaataatgtgcacgcattagttttacgaattacgggaaaggtgtata
tattgtaaataaaattttctcaaCCTCAAATTCCACGATTATTTTTTCCC
TTGAAATCCAAATTACTTCACCcgcagggctgcaaataaatatctttagt
cAATAGGACATCATGTCCAACAGAAATGAAACcctgtcggtcaaactcaa
aatcctgtcaGTCATTCGGtgtatttcttttctaaaattattCAGTCTTG
AAAATTACAGAGAAAGCCAGTAGGTAAAATAAAAGTGACCTTGGAACAAT
TCGTTACtataacagagaaattgatttgataaaagtgatcttagaagcAC
CCGTGAAAGTTTCAAAGAAAGCGAGTGGATAAAAGTGATCTCTTAGAAAT
ACTCTTAAAAGTTAGAATCTATAAAAGTAATCTTTGCAATACGGtgcggt
ggagagcgaagtattgtctttcttttgtttcagaaaacaatcgatgtaca
ggctttggttgcaaaggacaactgtcatggcggctcgaaggactctgatt
aatactcttatttctaaaaagctctctaactttttctaagcgtacttttg
ctggccaaaagtttgaaaataaatactagaataccaagcgaatacattta
tgaaatctagtgtgagaaaaacatcatcagacgagtaaattcaaacaaaa
tgcttataatgacacaaaattttgaattgggtatatctttccaatatttc
tccgagaagagctgaaattGACATGTATTAGACGTGAGTCTCCTAGCTCC
actggtatgaaaatcttttggtggcacgtggtgaggttgaggttgaagtt
tagaaatttctggtgtcaatattcaatttcttatagcatgtttttgcatc
ttcCTCGCATTTTAAAATGTCATAACGACGTATAATCAGTAATTAACTAG
ATGAGGTTGACTCtcggaggagaacttaaaggctcatttgggaattgaat
aagtgtattttgatgagaaatgcaattaaaatgctatgaAGAATCATGtt
aatggtggaaggagggtgaacaataatgtcattactgcagacaaggcttg
tacattagaaattggcaaaaatcagcaagttgtttttccagtgtgtATAA
TAATTCCTTGGTGCTaacaaggggtatttcgggtcccatatctttcAAAG
GACTTTTCcatttgccttgaaatttgacaacttACTTAACCTAAGGATGa
gctaccactggtgtaaaaatgaaggCTGTAGCATAAGTTTAAAATAGCTC
ATTTTTCGCATTCACAAATTTAACCactaaaaatcacaaatttttcaacc
aaaaatacattcaaatattgagcttttgattctctaaaagaagcaaaaaa
aatttccacaaaaaatttgactatcaaaagttacaagcattcTTGTTTCT
ACTGCCAATTATCTGGATACACTTTAGATTCAGTTATATTAactcaaaaa
tacttttttgtcattttcaggtTCGTTTGCCACCAGAAGTCAATAGAATT
CTCTACGTCAGGTTGGTTTTTCTGTTCTGATTCTATTTTCTCAAAACTGA
ACAATGAACACTTCCAGTTTCAAGGTCCTTAGTCAGGAACCAGAACACTG
TTTGTATACGGCTTTCtattaattcaatatttttggacctatcttggagg
tcctttaaatttaACGTTCGTTCGTTTGCTCGTTCGTTtgtcgttcgtct
gttaccagcttttcttggGACTGGCTCATTagtttctctgattttttgag
gaaattgcagtttttgcagattttcatttgcAGGCTTCCCAAGCGgttaa
agtacctgaaaatcagaCTGATCTTGGTTCGGTATTACAAGCGGTCTAGT
AGCggtcaagtttttttttagatCGGTCTCCAGACCTTCTAGAAATGTGA
TCTCTAACGGTTCTGGCTGCTTCTAGATGCTCGTGGTCGCTCACTAGACC
GGTTTGGGCCGTTCGTTAGACCGGTCCAGGCCGCTAGTTAGTGATTTTTA
GGAACAATTACATCAAAGAATTCTTGTAAAAGGATGTCGACCTTGGATGG
GACCGGACGGCAGCGGCAGCTAAATTAACTAGACTCGTCATAGCAGCCTT
TTGGTAAATTTATACCGGTTATCTACCGgcccttaaccctattagcccca
gggggtagaatctaccacgctggtgttcttttgtgtatatctcagagaaa
aatttttgaaacgacttgaaactttctgacttttaataaaattatagtaa
gagtacttgtgcaaaattttagggtcataggtccTCTCGGTCAGGTTTTA
Tgattttattgtgaaacatgacataaaaccaagctaaaatcgcttaaaac
tcaaaattttaaaattacgATAGCTTCTGAAGTATTGATCCAATCANNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA
AATcggatttaaaaaacaagtccaAATGCGCTGCGGATGCTGGAAAAAAA
ATCGCGGAACCGATTTaagggtcaccggggctgaccaaaaacacctttta
tctttcagaatcttcaaacagaatctcaATATCTTTATTGCTTCGACTGT
Gagagacatttttgtaaaccattcacttttgcttttttccgacaaggtgg
aaattttgtgatgcatcaaatttttttttcttcctggaagtTTGTGTCAT
AATGGAGAACACATGTACCAATTGTCAtgaccatagctcttctagataaa
aaacaatcgagggtggtagattctacccccccctggggctacaaaaatca
aaaaaggttgGGGTTAATGGGGTTAAAAGACCGTCTAAAGACCAGTccca
ttttcaggtactttaaatcgcttggggGAGTCgcatatttcattgttttt
tctcccaaaaacattattgataacaatgcccaccatctagcataattcaa
ttgtcaataaaactgatttttgcaactgggaccttctatttattttttcc
ctactctCCCCCTCCCcctatcaacaatcaatgatgaaatttaatgcgtt
atgcatttttgctaagcgctatatttgctgactgattattttcatttttc
tccttattgctatctaactttcatcatcaggtaggtccattcagcatcta
gcttgtttatgTTTGCATTATATCAAAGCAAAAAATCCttgaaaaagata
aagaatGGGATTTTTCATATATTCATGTCTTTTTCAGGAATTTACCATAC
AAAATTACATCTGAAGAAATCTATGACATCTTTGGAAAATATGGTGCTCT
TCGACAAGTGCGATTGTGAGTtttaatgatgaatttatttgaCCTTGTTG
GTTTATGGCCTTTTCATTAGAAACACCACTATACGCTTTCATCTAATGTT
ACCGGTCTTCAAACTTCTCTTGTCTGGTGTTTTTCCCCTGCCAGATCCAT
TTTGAATCTGATTTCACTTTTGtctaatctttttgttttgtacaATACAT
TTGTGACTTAAGCACTTTTGGGAagaacaatgcccaaaacagcGTTTGAA
AACTTTCTGGTCATTGACaacattgccatttttcatccttaaaaaatatt
catttttttcgacAGGGGAGTGACAAATGAGGCACGTGGAACGGCCTACA
TTGTTTACGAAGATATCTTTGATGCCAAGATGGCGTGTGATCATTTATCT
GGATTCAATGTTTGTAATCGATATCTGATCGTCCTTTATTACCAACCCAC
TAAGGTACGTTCACTAAGTATGTTTGAAATTCGTCAATGTGTTCACTAGT
GTAATGTGTCACCCTGAGACTTAGAATGTAAGATTCTTTCGGATAAGTAA
GATAAGAAAGACAATCCGCTAAACACGCTCGAATTCCTCTCTTTGCCAAC
AGATTTATAAAACCCGGCCTGCATGCttcggctgaaaagtgtgccatatt
tcggtaggaaatcctaccgaggtcacgtgacattacaatataatttcagc
gcttgaccaatcagaagcttcgcgacttttcgaaaacaataggaacaata
taatttgcaattttcatttgcttggaaaagcttaaaactagcccttcggg
ctttacagaaatctgagTCTTTGCCGATCCTGTCGTTCTCTTTGTTGGTC
TAAATCTTCAGCTCTCCTAAATTCATGGACGCTTTTCTCTTTCCGTTTAG
ATGTTCCAAAAGATGGACAAAGAGAAGAAGCAAGATCAGATCGATAAATT
GAAAGAGAAATATGGAGTGACAACAACCCCTGCACGGTAGAAGGTCGTCC
GGTGTTATGTAGCCTGTATATAATGGTAAACGATCCACGTACAACGCTGG
TTGTGGAAAGAGATTTTTCATGTGACCAAAGTGGTTACCCGATGTGACGG
AAAAGCGCAGATACTTTGGTTGGTTGAATGGAactcaaaaaaaacatttt
tcaaaaaagtaaatggGCAGAAtatttattaatattttttacaGTGGTTT
TTGAATTCCTGATATGACTAGAATATTTCTATTTGAATAATTCTAGTGTG
ttatttgaaattaaatttttttcacttctCCTGATCACTAATTTTTGTGG
TGACGGCAGGAGTCGAACAATTCAACGCCCAATACTCAGATCAGAAGTTG
TGTATACTAAGTTTCGAATTCATTCTATTTGAGAACAGCCAATTTCGCCC
CTTAAAAGCTTTCATTtataatgattcaatttttaagaaaggaTTGTAAA
ATACTTATGGCAATAAATGTTAAAGCTCAATCTACACGACCACGACAATT
TAGTAGTATTTAGCTGTCACTGTTCTTGAT

Coding sequence (CDS) from alignment at scaffold_105:384369..393698+

>TCONS_00045991 ID=TCONS_00045991|Name=TCONS_00045991|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_105:384369..393698+ (Clytia hemisphaerica)
atggcgATGCAAAAAAGGAATAAcgtTCGTTTGCCACCAGAAGTCAATAG
AATTCTCTACGTCAGGAATTTACCATACAAAATTACATCTGAAGAAATCT
ATGACATCTTTGGAAAATATGGTGCTCTTCGACAAGTGCGATTGGGAGTG
ACAAATGAGGCACGTGGAACGGCCTACATTGTTTACGAAGATATCTTTGA
TGCCAAGATGGCGTGTGATCATTTATCTGGATTCAATGTTTGTAATCGAT
ATCTGATCGTCCTTTATTACCAACCCACTAAGATGTTCCAAAAGATGGAC
AAAGAGAAGAAGCAAGATCAGATCGATAAATTGAAAGAGAAATATGGAGT
GACAACAACCCCTGCACGGTAGatggcgATGCAAAAAAGGAATAAcgtTC
GTTTGCCACCAGAAGTCAATAGAATTCTCTACGTCAGGAATTTACCATAC
AAAATTACATCTGAAGAAATCTATGACATCTTTGGAAAATATGGTGCTCT
TCGACAAGTGCGATTGGGAGTGACAAATGAGGCACGTGGAACGGCCTACA
TTGTTTACGAAGATATCTTTGATGCCAAGATGGCGTGTGATCATTTATCT
GGATTCAATGTTTGTAATCGATATCTGATCGTCCTTTATTACCAACCCAC
TAAGATGTTCCAAAAGATGGACAAAGAGAAGAAGCAAGATCAGATCGATA
AATTGAAAGAGAAATATGGAGTGACAACAACCCCTGCACGGTAGatggcg
ATGCAAAAAAGGAATAAcgtTCGTTTGCCACCAGAAGTCAATAGAATTCT
CTACGTCAGGAATTTACCATACAAAATTACATCTGAAGAAATCTATGACA
TCTTTGGAAAATATGGTGCTCTTCGACAAGTGCGATTGGGAGTGACAAAT
GAGGCACGTGGAACGGCCTACATTGTTTACGAAGATATCTTTGATGCCAA
GATGGCGTGTGATCATTTATCTGGATTCAATGTTTGTAATCGATATCTGA
TCGTCCTTTATTACCAACCCACTAAGATGTTCCAAAAGATGGACAAAGAG
AAGAAGCAAGATCAGATCGATAAATTGAAAGAGAAATATGGAGTGACAAC
AACCCCTGCACGGTAGatggcgATGCAAAAAAGGAATAAcgtTCGTTTGC
CACCAGAAGTCAATAGAATTCTCTACGTCAGGAATTTACCATACAAAATT
ACATCTGAAGAAATCTATGACATCTTTGGAAAATATGGTGCTCTTCGACA
AGTGCGATTGGGAGTGACAAATGAGGCACGTGGAACGGCCTACATTGTTT
ACGAAGATATCTTTGATGCCAAGATGGCGTGTGATCATTTATCTGGATTC
AATGTTTGTAATCGATATCTGATCGTCCTTTATTACCAACCCACTAAGAT
GTTCCAAAAGATGGACAAAGAGAAGAAGCAAGATCAGATCGATAAATTGA
AAGAGAAATATGGAGTGACAACAACCCCTGCACGGTAGatggcgATGCAA
AAAAGGAATAAcgtTCGTTTGCCACCAGAAGTCAATAGAATTCTCTACGT
CAGGAATTTACCATACAAAATTACATCTGAAGAAATCTATGACATCTTTG
GAAAATATGGTGCTCTTCGACAAGTGCGATTGGGAGTGACAAATGAGGCA
CGTGGAACGGCCTACATTGTTTACGAAGATATCTTTGATGCCAAGATGGC
GTGTGATCATTTATCTGGATTCAATGTTTGTAATCGATATCTGATCGTCC
TTTATTACCAACCCACTAAGATGTTCCAAAAGATGGACAAAGAGAAGAAG
CAAGATCAGATCGATAAATTGAAAGAGAAATATGGAGTGACAACAACCCC
TGCACGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029394XLOC_029394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045991-exon-scaffold_105-1491911889:384369..384596TCONS_00045991-exon-scaffold_105-1491911889:384369..384596Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1510915933:384369..384596TCONS_00045991-exon-scaffold_105-1510915933:384369..384596Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1575043694:384369..384596TCONS_00045991-exon-scaffold_105-1575043694:384369..384596Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1491911889:388489..388529TCONS_00045991-exon-scaffold_105-1491911889:388489..388529Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1510915933:388489..388529TCONS_00045991-exon-scaffold_105-1510915933:388489..388529Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1575043694:388489..388529TCONS_00045991-exon-scaffold_105-1575043694:388489..388529Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1491911889:392106..392183TCONS_00045991-exon-scaffold_105-1491911889:392106..392183Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1510915933:392106..392183TCONS_00045991-exon-scaffold_105-1510915933:392106..392183Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1575043694:392106..392183TCONS_00045991-exon-scaffold_105-1575043694:392106..392183Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1491911889:392484..392622TCONS_00045991-exon-scaffold_105-1491911889:392484..392622Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1510915933:392484..392622TCONS_00045991-exon-scaffold_105-1510915933:392484..392622Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1575043694:392484..392622TCONS_00045991-exon-scaffold_105-1575043694:392484..392622Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1491911889:393069..393698TCONS_00045991-exon-scaffold_105-1491911889:393069..393698Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1510915933:393069..393698TCONS_00045991-exon-scaffold_105-1510915933:393069..393698Clytia hemisphaericaexon
TCONS_00045991-exon-scaffold_105-1575043694:393069..393698TCONS_00045991-exon-scaffold_105-1575043694:393069..393698Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045991-proteinTCONS_00045991-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:384369..393698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
137.647	139.148	116.213	113.046	119.952	97.5389	122.203	126.222	95.7213	80.4732	66.9734	66.4032	54.9426	54.5459	43.6669	53.154	79.5173	74.7609	23.1604	29.37	61.3803	57.6647	79.2034	72.252	62.9108	69.9769	59.8568	54.3788	52.4021	48.3468
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034150SF3B14_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00045991 vs. Swiss-Prot (Human)
Match: SF3B6 (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.260e-61
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 1 
Query:  205 MAMQ--KRNNVRLPPEVNRILYVRNLPYKITSEEIYDIFGKYGALRQVRLGVTNEARGTAYIVYEDIFDAKMACDHLSGFNVCNRYLIVLYYQPTKMFQKMDKEKKQDQIDKLKEKYGVTTTPAR 573
            MAMQ  KR N+RLPPEVNRILY+RNLPYKIT+EE+YDIFGKYG +RQ+R+G T E RGTAY+VYEDIFDAK ACDHLSGFNVCNRYL+VLYY   + FQKMD +KK++Q+  LKEKYG+ T P +
Sbjct:    1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 125
The following BLAST results are available for this feature:
BLAST of TCONS_00045991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B62.260e-6172.80Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF... [more]
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