TCONS_00046003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046003
Unique NameTCONS_00046003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046003 ID=TCONS_00046003|Name=TCONS_00046003|organism=Clytia hemisphaerica|type=transcript|length=834bp
ATACCACCACCCACACCCACCCGCCCTGCACCCATCCCTGTGGTGACGTC
ACAAGAGGACGAAGTTGTGCCCATCAAAGGAATGAAGAAGGCTATGGTGA
AGTCAATGGAACAATCTTTGAGGATACCTCATTTTGGTTATTGTGATGAG
ATTGACGTCACTGAACTCATtgaAATCCAACGCTCATTGCGCCCGCTTTG
TATGGAACGCGGAGTGAAGTTATCCTTCATGCCTTTCTTCTTGAAAGCTG
CTTCCATGGCTTTGACGGAATTCCCCATGTTGAATGGCTCTTTTGATGAA
GAAAATATGGCTATGGTTTATAAGAAATCACACAATATTGGCATTGCCAT
GGATACGAAAGATGGTCTCCTTGTCCCAAACATCAAGAACATCCAACTGA
AGAGCGTCTTCCAAGTAGCGCAAGACTTGAACCATTTACATGAATTGGGA
AAACAAGGCAAATTAGGACTCGATGATTTAACAGGAGGAACTTTCACTTT
ATCGAATATTGGATCTATTGGAGGAACTTACGCCAAACCAGTGATCGCAC
CTCCAGAAGTTGCCATTGGTGCTCTTGGCAAAATACAGCATTTACCTCGT
TTCGATTCAGACGGCGAATTAGTGAAAGCAAGCATTTTTAACGTCAGTTG
GTCGGCTGACCATCGTGTTATAGACGGTGCGACCATGGCTAGATATTCTA
ACCTCTGGAAGTCATACCTTGAAACCCCATCATCAATGATCTTGGACATG
AAaaatatgaaaaacgAAAGTCGAAGAACAAATCGACGCTGTTTTCCTTC
TTGCGTAACGTCTGACGGCACTTTTTGACGACGC
Run BLAST on NCBI

protein sequence of TCONS_00046003-protein

>TCONS_00046003-protein ID=TCONS_00046003-protein|Name=TCONS_00046003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
IPPPTPTRPAPIPVVTSQEDEVVPIKGMKKAMVKSMEQSLRIPHFGYCDE
IDVTELIEIQRSLRPLCMERGVKLSFMPFFLKAASMALTEFPMLNGSFDE
ENMAMVYKKSHNIGIAMDTKDGLLVPNIKNIQLKSVFQVAQDLNHLHELG
KQGKLGLDDLTGGTFTLSNIGSIGGTYAKPVIAPPEVAIGALGKIQHLPR
FDSDGELVKASIFNVSWSADHRVIDGATMARYSNLWKSYLETPSSMILDM
KNMKNESRRTNRRCFPSCVTSDGTF
Run BLAST on NCBI

transcript from alignment at scaffold_105:547413..555692+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046003 ID=TCONS_00046003|Name=TCONS_00046003|organism=Clytia hemisphaerica|type=transcript|length=8280bp|location=Sequence derived from alignment at scaffold_105:547413..555692+ (Clytia hemisphaerica)
ATACCACCACCCACACCCACCCGCCCTGCACCCATCCCTGTGGTGACGTC
ACAAGAGGACGAAGTTGTGCCCATCAAAGGAATGAAGAAGGCTATGGTGA
AGTCAATGGAACAATCTTTGAGGATACCTCATTTTGGTTATTGTGATGAG
ATTGACGTCACTGAACTCATtgagtaaatattttttatgtttgcCATGAA
TTTTGCCTTTTGTAtcacaatgaagtgaatacagtcgctctcgtgttgtc
ttctgaccagccaccagaaccatTGGAAAGCCAATGGATCCGGCGAGACt
caaactcacaaccatgcAATTCGCGGAcatttgctctaccattgagctac
gggtTCATCTGGAACCTGAAGACTCAAGTGCCACTCCTCGGTAGATTTGG
GAGTGAATTTTTGCCTACTGACTTGGCAGAGACTTAAATTTCTTATGTTT
CATTAAGCCGTTGTCCTTTTGATTTTAGATGTTTTTAGATCATACTTCCA
CAAACGAGAACATTTCTTTGACAACATGAAATTGATATGACTTTGAAAAG
AACATTTCTaattccagggggtaatccTAAAGTCCAGCTGGTCTAAGAGA
AGTTCTAAGGTTAAAAGACAGTAAAAGGCTAATATAAGTTTTTCCTCCCT
TAAAGGTGTGAAGAAGAATGTTCCAagggttttttttggcaaattttgtc
cACACATTGTTAAGAATtatttttggcttgaaaaggttcgtccaaccCCT
GCATTGATGTTAAATGAAACAGGCCATTTTCTGAATCGAATCactttcta
ttttattttatctctCACCTTAGAATCCAACGCTCATTGCGCCCGCTTTG
TATGGAACGCGGAGTGAAGTTATCCTTCATGCCTTTCTTCTTGAAAGCTG
CTTCCATGGCTTTGACGGAATTCCCCATGTTGAATGGCTCTTTTGATGAA
GAAAATATGGCTATGGTTTATAAGGTATATTGTTTTTCACATAAGGAAAG
ATGCTCAGTAACATGATGAACCAAATAAGGGgcgaattttttaaatatat
gatttagctctgtaaaaaaatattgacgATCTTACTCACACAAAGTGCCT
CGTGATTAGATTGATTAAACGTATCACTAATAGACATAGTAGATATGGTT
ACCACCCCTCTTTTGACCCCTTTTGTGTCAAAACTGATATAAACTCCTTG
AGTTTCTTTCCACTCTGAATTTATATTTCCAGAACGTATAAAATTTTTAC
TGCTTCTAACCTGAAACTATTTCTGCCAGCTTCATCAGTATTGCTGGCCA
TCGCTGGCCGTCATCCTTTGAAATAAGATCTCTGTGTAAAACAGACGATA
ACCCACCCTCCACAGTTCGTGATCAAACATGGCTGTACTCAGCCTTATAT
TGGTTCATATACAGAAATGTGCGTTTTCTAGAGTGCTTAAGACTATTAAG
AGACCATACATGGTCTATATGCTCTATATATGCTGTACTATATGCGGTAC
ATATACCATAGATGGTATATGTACCGCAAAACCCACACTAAATTTCTGac
ctaaataattattttttgggcTGCCTTTATCAAGAAAATTGTTTGATGGT
GCGAGGAGTCCCATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGATAAGTTTGACAGAG
CAGTAGCATGTATACAAGAAGAAATCCCTCCATCAACATATACATCGACT
CCAGACTCACTCATCATGTCTCCTTCTGACAAAATAAAAGCTTCTCGTGA
TTATTGGAAGGCTAAATTTGACCAGGCTTAGTCCCTGATAAGGGAGATGG
CAGAAAGAAGCATCCAACTGGAGGAaattcctggccttctgacaataaaa
aaggttaagccaaatgaagaaaagaaagCAACCACAAGTACAAGGGTGAC
TCAGGTACACGACTCAATGAGGGCTAAAGATGTAGCAACCAACCAAGGTC
AAATAAATCAGGGATGAGAAACTGAAGAAggaaactgaaaaagaagaagc
aaAGAAGAAGAGAGAGGAGATCAGAGAAACATTCATCAAATGCAAAATTT
AATGTATCTGTGTACAACAAAAATGCTTGGCTTTGGGATTAAAGCAGTTC
CCAGTATGTCTATGTTCTTCGTTCAGTTTGCAGCAAAGCAAGCTATAAAG
TTAATGGAATCAAACCACTGATGATATTACCAACCAAACAACATTCAATC
TCTAAACGATTTTTTGAGGAGGATTCGTCATCAGATGAGAAAGGTGAGGA
ATTTGAATCTGAAGGAAGCGAAATGTCCGAAGATGAAACTGATGATGAAA
GCAACATCCAAAAACTCAAGAATTGCTGGAAAGGCCTGGCACCGCCAACA
AAAGAGACTGGTAGATGGTATGCTGCCATCTACACCACCAAGAAAACAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTA
tgatttaattgaaaatatgtttaaCAAAGTATCAGGACTAAACCGTCTAG
CTTTAGTAAATATGATGTAATATCCAtacttttttaagcttttgagtATA
TGCTAAACATTATTGTTGTATTTTTgcatagtttttcttgaaaatgtttc
acaaaattgtattccaGAAGTATGTTTGAGAAATAGATGAATATTTTTGT
GttcaacatcaaaaaatgctaaaaCTCACAATTTTTCTCATatgtacctc
aaaacccacaattaaaaagtgagttttttgaGAGCAATTAAAATAAACAC
ATTGATTACAGCACTTAGGACTTTTTTCCTATATTTGTGTTATGCCTAGA
GGTAATAGAAAACCAAAGATTGATAGGTTAGTCAATAGCAAGTGACTtat
ctgaccgttttttgaaaaaaatcaaaaattttgaagctagATTTCCAGCG
TTAAAtcttgataaaaaacttttacctCATCGATAATgctcaattttgtt
ttaaataataaagaaacTATTATGCCAACATAATCTTAAAAATTTATgct
gataaaaacattttagatttttctagaactcctgaaatgaaattgttggt
TTTGAGGTACCTGTGGGTTTTGTGGTACATATACCTTGACGATCTTACTC
ACACAAAGTGCCTCGTGATTAGATTGATTAAACGTATCACTAATAGACAT
AGTATATGGTTACCACCCCTCTTTTGACCCCTTTTGTGTCAAAACTGATA
TAAACTCCTTGAGTTTCTTTCCACTCTGAATTTATATTTCCAGAACGTAT
AAAATTTTTACTGCTTCTAACCTGAAACTATTTCTGCCAGCTTCATCAGT
ATTGCTGGCCATCGCTGGCCGTCATCCTTTGAAATAAGATCTCTGTGTAA
AACAGACGATAACCCACCCTCCACAGTTCGTGATCAAACATGGCTGTACT
CAGCCTTATATTGGTTCATATACAGAAATGTGCGTTTTCTAGAGTGCTTA
AGACTATTAAGAGACCATAGTAAAATATCATCAACAGCTCTTACAATCTT
GAACTCTACATTCTTCCATAGAAATCACACAATATTGGCATTGCCATGGA
TACGAAAGATGGTCTCCTTGTCCCAAACATCAAGAACATCCAACTGAAGA
GCGTCTTCCAAGTAGCGCAAGACTTGAACCATTTACATGAATTGGGAAAA
CAAGGCAAATTAGGACTCGATGATTTAACAGGAGGAACTTTCACTTTATC
GAATATTGGATCTGTAAGTATGACTAGATTTCTCTAATTTTGACCCTCGT
GTGGTGAAGCAGCTGAATTACAGAGTATTTTTTGTGAAACCTTTTAAAAA
GCGGTCTTCGTTTTACCTCGAATTATTCAAGTCGAATAAAAGAGTTTTGG
ATTGGTGAAAGTTGTATAGTTTCTGTGTGTTTAATCTCAGTGTAGGTTTC
ATTTTTGTTACCGAACTAGGTCTCTATAATTTAACAAAAAGGACTTTCAA
CCTGTCCAATATTGGGTCTGTTGGTTTTTttaattccttttttttctttt
catggTCCTTTTCTTTAGGGAAAGGTCAGTCTCTCGACAACAGTCAAGGG
TGGCTTGAAGGTTCTCATTTTCAATAGGTCTGCGTGGTACACTCACTCTT
TTGACTAGGTTGCTCATACAGGATATAAATCATACAATTTTTGTATAGCT
TTCGGGATTCCTAAAGGTAAGTCTTTCGATCGCATCCGAAAGCACCCCGA
AGAGTTATGGGGTATGACCCGGCCAGGTCACGTTTAttgcttcgtagtac
actctgtgcgcattgtctgtttgataaaaaaattcccgtacgggcNCTTG
GGGTATGACCCAACCAGGTCTCGTTTAttgcttcgtagtacactctgtgc
gcattgtctgtttgataaaaaaattcccgtacgggcCTTTCTACGataaa
gtatgatttataaatagcaacacttctctcatcgtctcccctctctcacc
accactccatcgcagcggtcgcagttttaaaatctcaaatgagaaaagac
aatgacaacagaccctctacggcaatgaattttaaaattagccgtagatg
ctgggtctgtgtacagacaaggcCAGGGATCGAACCAATGACATTGTGCA
CCGTAGCCTTATGCTTTATTTTGCACTACGGTTTGCTCAGTAATTTTTCC
TGAAGATGGTATAGATTTCACTCAAATGTCATTACTCTCTAATagatttg
tcattttattgaatttgtCTTTTATACTGTGTATGTCGGATGGAAATGGT
TATTTAGGTGTGTGGCATTGGGTCGATGGACGTGTACTAAGTGACAGTTT
TTACACTAGGCTTGGATAGTGGTAGTATTCgagcaattttgttttgaact
ttttcCATCAATGATCTTGGGATTGGTTTCCCTAGTTTTTGGGTTCAGAT
GTCATacattttcttttggaaaggtgGGTTTTGACCTTCATCAACAGTTT
TGTATTGCTTTCTTCCAGTTTCATTTTCGTCACAATGATTCTTTTGAATG
TCATTTCATCTACAGATTGGAGGAACTTACGCCAAACCAGTGATCGCACC
TCCAGAAGTTGCCATTGGTGCTCTTGGCAAAATACAGGTACGGTAGAAat
cattaaaggttttgtttttaattaagagtgatatcgtttgcttactcgtc
aattttaattcacaagctttttcacgtCACGTTGAATTGACACTGCTCCa
cgcaagattggtcagaaaatggaaaagaaaaagattttttgcttatatca
tcataataaaacaaaaggcagacactgtcccgatatgaaatatgtatctg
atataaaacgggaacacttatgtaaaaacaaaacctttaaaaaggcttct
ttttttttcgtcatCAAGTATCATGTAAAAAGGTTTCAGACAGCATTTCG
TCACACTAGAAGCAGTAAAAATTGTATCTATTATTATATCAAACTTGGGT
TGAACAATATTCattgatttgaaaaaagaattaaactttggtgaaagatt
ttttgtcaattttgtgaACTTAAACAAGCAAGTGAAGAATTTTCTGCCCT
AAAGGCTGGTTTTCAAAAAGTGGAGGTCGGGGAAAATTAAAGGCAGAGTA
AAAATGTAATGAAAATTACAAAGACTTGTGTTACAAATGTTTTATTGACG
AGGAAGTTTCTTCTTATTTCGACTATTCATaaataatgttaatgttaatc
tttcatttttatttcgaactgttactgatttaaaaaaatcatttttaatg
gTTTGAATTGCATTGTTTATCTTCGTTCGTTTTGACAATAGGATTTTACA
TTCCTGTTTAAACGAAACATTTAAACAATCAAACTTTAGACTTTGGAAGA
TAATAATTGAGTCTTTGACCAGCTTTGATAGATTTGTCTCcgtaaaaagt
ttgatttgtGATTTGTCAAATCAAGTTTCAAATCTCGGAAATACTTTTTT
GGGGAGAAAGGTTTGTCAAAATAATAAGTTTAAATTCTATCAGCTGTTAA
TTATAGATTGTTTTTCTATAGAGGGTGTATATCTTCTCCTCGTAGAGTGC
TCAATACGTAAATAGAGCGTtattataataaagagttgacacaatatctt
tgtttcaaacttaGAGTTTCATAGTGCACAGGcaccaatcttcagtgaaa
tgagATAacgttagaaaataaaatacaatatgttgtcttcaaaaaatatt
tatgacgtcacatttgaACGTCATCAGGTGGTTCAAAGATATCaagctga
aaattgaaaatttcgtctGTGTCTACATTTGGCAATAATTTCTAATCTCT
TTAGATCTTAGAttgtttttctatattttctcaTTTCAGCATTTACCTCG
TTTCGATTCAGACGGCGAATTAGTGAAAGCAAGCATTTTTAACGTCAGTT
GGTCGGCTGACCATCGTGTTATAGACGGTGCGACCATGGCTAGATATTCT
AACCTCTGGAAGTCATACCTTGAAACCCCATCATCAATGATCTTGGACAT
GAAGTAGAGAGAAAAGCTCCTTTTTAAAATTCCGAAGGAtaacaaattta
tttattttttaattttttttttgaatctaCCTTCAAATTCTTATTTATGA
CAATCGTAATTTTCCAATTTTACTCTTGTGCTTACGCAGGGACCTGGAGA
TTAATTGGGATGTTGTCAGATTATTTTGTCCTTTTACGAATTTAGAAATC
CATAGAGCCAAGCCTTCCCTTTTTACTTACATTTTGGTAACGGCTTAACC
TTAAAGCTAAGACCAATATTTAACAATATGAAATGAAACTTGCATGTTTT
TGCTTATCGCCTAGATTTGAGGAAAACGGCCGATGCCTAGCCCCTCCTAA
TTCCGGCTATTGTTTTTAGATACTATTAGTACTTCAGATACTTAGGTTtt
taataaaatagattttcaaacaaatttaacggaaaaatatttatcctctt
tcatttgatttgttatttttagaccattatttttttctttttttaaagaa
atatgaaaaacgAAAGTCGAAGAACAAATCGACGCTGTTTTCCTTCTTGC
GTAACGTCTGACGGCACTTTTTGACGACGC

Coding sequence (CDS) from alignment at scaffold_105:547413..555692+

>TCONS_00046003 ID=TCONS_00046003|Name=TCONS_00046003|organism=Clytia hemisphaerica|type=CDS|length=4968bp|location=Sequence derived from alignment at scaffold_105:547413..555692+ (Clytia hemisphaerica)
ATACCACCACCCACACCCACCCGCCCTGCACCCATCCCTGTGGTGACGTC
ACAAGAGGACGAAGTTGTGCCCATCAAAGGAATGAAGAAGGCTATGGTGA
AGTCAATGGAACAATCTTTGAGGATACCTCATTTTGGTTATTGTGATGAG
ATTGACGTCACTGAACTCATtgaAATCCAACGCTCATTGCGCCCGCTTTG
TATGGAACGCGGAGTGAAGTTATCCTTCATGCCTTTCTTCTTGAAAGCTG
CTTCCATGGCTTTGACGGAATTCCCCATGTTGAATGGCTCTTTTGATGAA
GAAAATATGGCTATGGTTTATAAGAAATCACACAATATTGGCATTGCCAT
GGATACGAAAGATGGTCTCCTTGTCCCAAACATCAAGAACATCCAACTGA
AGAGCGTCTTCCAAGTAGCGCAAGACTTGAACCATTTACATGAATTGGGA
AAACAAGGCAAATTAGGACTCGATGATTTAACAGGAGGAACTTTCACTTT
ATCGAATATTGGATCTATTGGAGGAACTTACGCCAAACCAGTGATCGCAC
CTCCAGAAGTTGCCATTGGTGCTCTTGGCAAAATACAGCATTTACCTCGT
TTCGATTCAGACGGCGAATTAGTGAAAGCAAGCATTTTTAACGTCAGTTG
GTCGGCTGACCATCGTGTTATAGACGGTGCGACCATGGCTAGATATTCTA
ACCTCTGGAAGTCATACCTTGAAACCCCATCATCAATGATCTTGGACATG
AAaaatatgaaaaacgAAAGTCGAAGAACAAATCGACGCTGTTTTCCTTC
TTGCGTAACGTCTGACGGCACTTTTTGAATACCACCACCCACACCCACCC
GCCCTGCACCCATCCCTGTGGTGACGTCACAAGAGGACGAAGTTGTGCCC
ATCAAAGGAATGAAGAAGGCTATGGTGAAGTCAATGGAACAATCTTTGAG
GATACCTCATTTTGGTTATTGTGATGAGATTGACGTCACTGAACTCATtg
aAATCCAACGCTCATTGCGCCCGCTTTGTATGGAACGCGGAGTGAAGTTA
TCCTTCATGCCTTTCTTCTTGAAAGCTGCTTCCATGGCTTTGACGGAATT
CCCCATGTTGAATGGCTCTTTTGATGAAGAAAATATGGCTATGGTTTATA
AGAAATCACACAATATTGGCATTGCCATGGATACGAAAGATGGTCTCCTT
GTCCCAAACATCAAGAACATCCAACTGAAGAGCGTCTTCCAAGTAGCGCA
AGACTTGAACCATTTACATGAATTGGGAAAACAAGGCAAATTAGGACTCG
ATGATTTAACAGGAGGAACTTTCACTTTATCGAATATTGGATCTATTGGA
GGAACTTACGCCAAACCAGTGATCGCACCTCCAGAAGTTGCCATTGGTGC
TCTTGGCAAAATACAGCATTTACCTCGTTTCGATTCAGACGGCGAATTAG
TGAAAGCAAGCATTTTTAACGTCAGTTGGTCGGCTGACCATCGTGTTATA
GACGGTGCGACCATGGCTAGATATTCTAACCTCTGGAAGTCATACCTTGA
AACCCCATCATCAATGATCTTGGACATGAAaaatatgaaaaacgAAAGTC
GAAGAACAAATCGACGCTGTTTTCCTTCTTGCGTAACGTCTGACGGCACT
TTTTGAATACCACCACCCACACCCACCCGCCCTGCACCCATCCCTGTGGT
GACGTCACAAGAGGACGAAGTTGTGCCCATCAAAGGAATGAAGAAGGCTA
TGGTGAAGTCAATGGAACAATCTTTGAGGATACCTCATTTTGGTTATTGT
GATGAGATTGACGTCACTGAACTCATtgaAATCCAACGCTCATTGCGCCC
GCTTTGTATGGAACGCGGAGTGAAGTTATCCTTCATGCCTTTCTTCTTGA
AAGCTGCTTCCATGGCTTTGACGGAATTCCCCATGTTGAATGGCTCTTTT
GATGAAGAAAATATGGCTATGGTTTATAAGAAATCACACAATATTGGCAT
TGCCATGGATACGAAAGATGGTCTCCTTGTCCCAAACATCAAGAACATCC
AACTGAAGAGCGTCTTCCAAGTAGCGCAAGACTTGAACCATTTACATGAA
TTGGGAAAACAAGGCAAATTAGGACTCGATGATTTAACAGGAGGAACTTT
CACTTTATCGAATATTGGATCTATTGGAGGAACTTACGCCAAACCAGTGA
TCGCACCTCCAGAAGTTGCCATTGGTGCTCTTGGCAAAATACAGCATTTA
CCTCGTTTCGATTCAGACGGCGAATTAGTGAAAGCAAGCATTTTTAACGT
CAGTTGGTCGGCTGACCATCGTGTTATAGACGGTGCGACCATGGCTAGAT
ATTCTAACCTCTGGAAGTCATACCTTGAAACCCCATCATCAATGATCTTG
GACATGAAaaatatgaaaaacgAAAGTCGAAGAACAAATCGACGCTGTTT
TCCTTCTTGCGTAACGTCTGACGGCACTTTTTGAATACCACCACCCACAC
CCACCCGCCCTGCACCCATCCCTGTGGTGACGTCACAAGAGGACGAAGTT
GTGCCCATCAAAGGAATGAAGAAGGCTATGGTGAAGTCAATGGAACAATC
TTTGAGGATACCTCATTTTGGTTATTGTGATGAGATTGACGTCACTGAAC
TCATtgaAATCCAACGCTCATTGCGCCCGCTTTGTATGGAACGCGGAGTG
AAGTTATCCTTCATGCCTTTCTTCTTGAAAGCTGCTTCCATGGCTTTGAC
GGAATTCCCCATGTTGAATGGCTCTTTTGATGAAGAAAATATGGCTATGG
TTTATAAGAAATCACACAATATTGGCATTGCCATGGATACGAAAGATGGT
CTCCTTGTCCCAAACATCAAGAACATCCAACTGAAGAGCGTCTTCCAAGT
AGCGCAAGACTTGAACCATTTACATGAATTGGGAAAACAAGGCAAATTAG
GACTCGATGATTTAACAGGAGGAACTTTCACTTTATCGAATATTGGATCT
ATTGGAGGAACTTACGCCAAACCAGTGATCGCACCTCCAGAAGTTGCCAT
TGGTGCTCTTGGCAAAATACAGCATTTACCTCGTTTCGATTCAGACGGCG
AATTAGTGAAAGCAAGCATTTTTAACGTCAGTTGGTCGGCTGACCATCGT
GTTATAGACGGTGCGACCATGGCTAGATATTCTAACCTCTGGAAGTCATA
CCTTGAAACCCCATCATCAATGATCTTGGACATGAAaaatatgaaaaacg
AAAGTCGAAGAACAAATCGACGCTGTTTTCCTTCTTGCGTAACGTCTGAC
GGCACTTTTTGAATACCACCACCCACACCCACCCGCCCTGCACCCATCCC
TGTGGTGACGTCACAAGAGGACGAAGTTGTGCCCATCAAAGGAATGAAGA
AGGCTATGGTGAAGTCAATGGAACAATCTTTGAGGATACCTCATTTTGGT
TATTGTGATGAGATTGACGTCACTGAACTCATtgaAATCCAACGCTCATT
GCGCCCGCTTTGTATGGAACGCGGAGTGAAGTTATCCTTCATGCCTTTCT
TCTTGAAAGCTGCTTCCATGGCTTTGACGGAATTCCCCATGTTGAATGGC
TCTTTTGATGAAGAAAATATGGCTATGGTTTATAAGAAATCACACAATAT
TGGCATTGCCATGGATACGAAAGATGGTCTCCTTGTCCCAAACATCAAGA
ACATCCAACTGAAGAGCGTCTTCCAAGTAGCGCAAGACTTGAACCATTTA
CATGAATTGGGAAAACAAGGCAAATTAGGACTCGATGATTTAACAGGAGG
AACTTTCACTTTATCGAATATTGGATCTATTGGAGGAACTTACGCCAAAC
CAGTGATCGCACCTCCAGAAGTTGCCATTGGTGCTCTTGGCAAAATACAG
CATTTACCTCGTTTCGATTCAGACGGCGAATTAGTGAAAGCAAGCATTTT
TAACGTCAGTTGGTCGGCTGACCATCGTGTTATAGACGGTGCGACCATGG
CTAGATATTCTAACCTCTGGAAGTCATACCTTGAAACCCCATCATCAATG
ATCTTGGACATGAAaaatatgaaaaacgAAAGTCGAAGAACAAATCGACG
CTGTTTTCCTTCTTGCGTAACGTCTGACGGCACTTTTTGAATACCACCAC
CCACACCCACCCGCCCTGCACCCATCCCTGTGGTGACGTCACAAGAGGAC
GAAGTTGTGCCCATCAAAGGAATGAAGAAGGCTATGGTGAAGTCAATGGA
ACAATCTTTGAGGATACCTCATTTTGGTTATTGTGATGAGATTGACGTCA
CTGAACTCATtgaAATCCAACGCTCATTGCGCCCGCTTTGTATGGAACGC
GGAGTGAAGTTATCCTTCATGCCTTTCTTCTTGAAAGCTGCTTCCATGGC
TTTGACGGAATTCCCCATGTTGAATGGCTCTTTTGATGAAGAAAATATGG
CTATGGTTTATAAGAAATCACACAATATTGGCATTGCCATGGATACGAAA
GATGGTCTCCTTGTCCCAAACATCAAGAACATCCAACTGAAGAGCGTCTT
CCAAGTAGCGCAAGACTTGAACCATTTACATGAATTGGGAAAACAAGGCA
AATTAGGACTCGATGATTTAACAGGAGGAACTTTCACTTTATCGAATATT
GGATCTATTGGAGGAACTTACGCCAAACCAGTGATCGCACCTCCAGAAGT
TGCCATTGGTGCTCTTGGCAAAATACAGCATTTACCTCGTTTCGATTCAG
ACGGCGAATTAGTGAAAGCAAGCATTTTTAACGTCAGTTGGTCGGCTGAC
CATCGTGTTATAGACGGTGCGACCATGGCTAGATATTCTAACCTCTGGAA
GTCATACCTTGAAACCCCATCATCAATGATCTTGGACATGAAaaatatga
aaaacgAAAGTCGAAGAACAAATCGACGCTGTTTTCCTTCTTGCGTAACG
TCTGACGGCACTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029401XLOC_029401Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046003-proteinTCONS_00046003-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046003-exon-scaffold_105-1491911889:547413..547585TCONS_00046003-exon-scaffold_105-1491911889:547413..547585Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1510915933:547413..547585TCONS_00046003-exon-scaffold_105-1510915933:547413..547585Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1575043694:547413..547585TCONS_00046003-exon-scaffold_105-1575043694:547413..547585Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1491911889:548236..548386TCONS_00046003-exon-scaffold_105-1491911889:548236..548386Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1510915933:548236..548386TCONS_00046003-exon-scaffold_105-1510915933:548236..548386Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1575043694:548236..548386TCONS_00046003-exon-scaffold_105-1575043694:548236..548386Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1491911889:552134..552325TCONS_00046003-exon-scaffold_105-1491911889:552134..552325Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1510915933:552134..552325TCONS_00046003-exon-scaffold_105-1510915933:552134..552325Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1575043694:552134..552325TCONS_00046003-exon-scaffold_105-1575043694:552134..552325Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1491911889:553628..553699TCONS_00046003-exon-scaffold_105-1491911889:553628..553699Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1510915933:553628..553699TCONS_00046003-exon-scaffold_105-1510915933:553628..553699Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1575043694:553628..553699TCONS_00046003-exon-scaffold_105-1575043694:553628..553699Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1491911889:554952..555115TCONS_00046003-exon-scaffold_105-1491911889:554952..555115Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1510915933:554952..555115TCONS_00046003-exon-scaffold_105-1510915933:554952..555115Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1575043694:554952..555115TCONS_00046003-exon-scaffold_105-1575043694:554952..555115Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1491911889:555611..555692TCONS_00046003-exon-scaffold_105-1491911889:555611..555692Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1510915933:555611..555692TCONS_00046003-exon-scaffold_105-1510915933:555611..555692Clytia hemisphaericaexon
TCONS_00046003-exon-scaffold_105-1575043694:555611..555692TCONS_00046003-exon-scaffold_105-1575043694:555611..555692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:547413..555692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.1084	52.8985	91.1695	102.468	35.5486	24.5947	29.4558	31.3559	29.9505	48.1515	24.7235	29.8608	18.711	17.2819	29.0368	35.4439	39.3751	34.791	13.4837	13.8801	11.9689	14.0121	30.2599	25.2705	21.7975	20.2993	18.6577	15.3424	22.2143	21.152
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0010782-oxoacid_DH_actylTfrase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016746transferase activity, transferring acyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016746 transferase activity, transferring acyl groups
Blast
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BLAST of TCONS_00046003 vs. Swiss-Prot (Human)
Match: ODB2 (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3)

HSP 1 Score: 311.227 bits (796), Expect = 1.844e-102
Identity = 155/237 (65.40%), Postives = 194/237 (81.86%), Query Frame = 1 
Query:   43 VTSQEDEVVPIKGMKKAMVKSMEQSLRIPHFGYCDEIDVTELIEIQRSLRPLCMERGVKLSFMPFFLKAASMALTEFPMLNGSFDEENMAMVYKKSHNIGIAMDTKDGLLVPNIKNIQLKSVFQVAQDLNHLHEXXXXXXXXXXXXXXXXXXXSNIGSIGGTYAKPVIAPPEVAIGALGKIQHLPRFDSDGELVKASIFNVSWSADHRVIDGATMARYSNLWKSYLETPSSMILDMK 753
            V + +D+  PIKG +KAMVK+M  +L+IPHFGYCDEID+TEL++++  L+P+   RG+KLSFMPFFLKAAS+ L +FP+LN S DE    + YK SHNIGIAMDT+ GL+VPN+KN+Q+ S+F +A +LN L +LG  G+L   DLTGGTFTLSNIGSIGGT+AKPVI PPEVAIGALG I+ +PRF+  GE+ KA I NVSWSADHRVIDGATM+R+SNLWKSYLE P+ M+LD+K
Sbjct:  246 VFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPEVAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAFMLLDLK 482
The following BLAST results are available for this feature:
BLAST of TCONS_00046003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ODB21.844e-10265.40Lipoamide acyltransferase component of branched-ch... [more]
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