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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046007 ID=TCONS_00046007|Name=TCONS_00046007|organism=Clytia hemisphaerica|type=transcript|length=3727bpRun BLAST on NCBI protein sequence of Rfx family transcription factor >TCONS_00046007-protein ID=TCONS_00046007-protein|Name=Rfx family transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=844bp MTRQGKIVQPAHGDHTARDKHVKTKAEPVDTQLQPVDPLQQQEEGHVISPRun BLAST on NCBI transcript from alignment at scaffold_105:585438..645750+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046007 ID=TCONS_00046007|Name=TCONS_00046007|organism=Clytia hemisphaerica|type=transcript|length=60313bp|location=Sequence derived from alignment at scaffold_105:585438..645750+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_105:585438..645750+ >TCONS_00046007 ID=TCONS_00046007|Name=TCONS_00046007|organism=Clytia hemisphaerica|type=CDS|length=20280bp|location=Sequence derived from alignment at scaffold_105:585438..645750+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046007 vs. Swiss-Prot (Human)
Match: RFX3 (Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2) HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0 Identity = 298/596 (50.00%), Postives = 396/596 (66.44%), Query Frame = 3
Query: 1569 SSFPYGAGGTGNESMYSQQSNLHTYMDSHGNASQ-NQMFQSYSAQGGHPGSMGLGVSPQAIGVAQQAQYLQPGQAASQRVPISHTTRASPITV-------------------------QWLLENYETSDGVSLPRSTLYHHYLRHCAENKIDAVNAASFGKLIRSVFVGLKTRRLGTRGNSKYHYYGIRVKPNSPLARITDDT-HVALRATPTSSKRSMGSNNYDEERRTEGAASNAEDSS------------ALSAHQQYLGDVGDGLPEGPVIDLTEPLPEGLKKEDVITFGNYYRSHSEALLEVISTLQFDLVEALWQSFYK-SPAAANKADNGTLDNN----EFNITKNDLITFCNYKPVQVFIKETDYILYQKLVGVLVPDVLRAVPSALTQIVRNFAKSLENWLVGSMSEMPKEICNVKVAAVSAFSQTLRRYTSLNHLAQAARAVLQNSQQINQMWNDLNKVDFNNVQEQSSWVCQCDESLIAKLEQDFKQTLAQQHSLEQWAKWLESVVAMVLEPHQGQESYPKAARNFLLNWSFYSSMIIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKVAAHTGKSPMSVMAE 3224
+++PY MYSQ + Y D+ G+++Q + S+S G G + +GV+ + + YL + ++HTTRASP T+ QWLL+NYET++GVSLPRSTLY+HYLRHC E+K+D VNAASFGKLIRS+F+GL+TRRLGTRGNSKYHYYGIRVKP+SPL R+ +D ++A+R P K+ Y ++ +G A S A S H Q D LPE ++++ LP+G ED+ + + YR H EA+L+V+ LQF L+E LWQ+F++ SP+ T +N E + K LIT C ++ + ++ D+ +YQ LV +L+PDVLR +PSALTQ +RNFAKSLE WL +M+ +P+ + KVAAVSAF+QTLRRYTSLNHLAQAARAVLQN+ QINQM +DLN+VDF NVQEQ+SWVCQCD++++ +LE DFK TL QQ +LEQWA WL++V+ L+P++G+ S+PKAAR FLL WSFYSSM+IRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG++P++VM E
Sbjct: 75 TTYPYT-----ETQMYSQNTG-GNYFDTQGSSAQVTTVVSSHSMVG--TGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQ-----RYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS-LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGE 656 The following BLAST results are available for this feature:
BLAST of TCONS_00046007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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