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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046010 ID=TCONS_00046010|Name=TCONS_00046010|organism=Clytia hemisphaerica|type=transcript|length=462bp
GTCAAAAAGATCATTTCAGAGAGCTTGTGGTTGAGCAATGGGTGACCAAA
CGCCAACAACAACCAAGATCACAGCACCAACATCTGTGGCAATGCAGAAA
ATTGCTTCTCTACCTTCGCTTGCGGCTAGTCTGATCTCCCCTGCAGCTGT
CGCCAAAGCTTCCATCTCAAAACCGGCCACATCAACAGCATCCTCCACTA
TTGGTCAACAAATTGCTTTATTGAACAACTCTGGTGCAAATACCAATATC
TTGATCAAGACGACAAAAACAAACAGCAGTGGACAGCCAACTTATGTTGC
AATAAGCATCCCTACTCAGAACACATCTACCTCTCCTGGGCAGAAGCAAT
CCTTCCCGTTAGCGATACATcagttaaaaattaaacaacaacaacaacaa
caacaacaaacccAGCAACaagatgatgaagaaaaagaagtcaAAGCTGA
GAAGACCACTGG Run BLAST on NCBI transcript from alignment at scaffold_105:610989..620245+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046010 ID=TCONS_00046010|Name=TCONS_00046010|organism=Clytia hemisphaerica|type=transcript|length=9257bp|location=Sequence derived from alignment at scaffold_105:610989..620245+ (Clytia hemisphaerica)
GTCAAAAAGATCATTTCAGAGGTTTGCCTTTCTGCTTTCACTTTTCacaa
aattcattttaaaatgGAACACAGAAAATGTGTATATACCAGACTCCcac
gctcgataggatcgatcatcggaacggctcgatgacggatcgatatgtga
tcgatggattacttaacgattcGGATaagagatcgatagaggatcgatac
tcaagatttttttaagcttatgattagttatcgattatattatcgatcta
tcatcgatcttttatcgatcgaTGTATGATCGATACATGATCGATACATG
ATAGAttcataatcgatttataatcgatgcatactcgattaacgatcgat
gacgaatcgattaacgatcgatgacgaatcgatatactcgattgaaatac
tagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNatcgatcctatcgagcgcgggggtctggtatATATTCATTTGGC
AATTTATTCACTTGCATTTTATCATAGAGATATTCATGAAATGAATTCaa
caattcaatttttattttgcacatggtttaaataaaataatatatattgA
TCTTAATTCTGACAAAGATTCCAACATACCTTAAGTTGGACTAATATCga
cgacatccctcatctaatttcgacacccttctttagagacaggaataaca
TGAAAGCTTGagtcactgattgaaaaaggattattcctctctgaccacta
agcaaagaaaaacagtttcaacctttctatcaatttcagctgaacATGCT
TTTCAATATATAAGACGTGCGCAATCGCGCTCGCGCTTAAAACGCTCGTC
AATCTGGTATGGTGAGCGAAAAATTACGCACATCAATTATACTTTGATTC
TATAGAAAAATATCTAAGGGTGTTTTGTACGAAATCGCGCACTCTAAAAT
TGGTTCACATGCGCgaattatgtaaaaattttgCCTGCTTCAAGCACCGT
TGTCTTTGTTACGTGAGTGATTCGTTGCTCTCCTACTTAtttcttcctgg
aaaagcctggctgataaaaagggtgtccgAATTAGAGGAggaatgtcgac
attagaccaagttacggtactatcttattattattattattgttattatt
attaaaattcaCACTGTTTTCAATGCTGGTCctggtaaaaataaatattt
ttaaaataagataaaaactaTATATGATATAAAACTAGATGTATGATAAA
AGTGTAGATGATCtaatcaacaaaatcaaagatCAAACAAATTGAACCTC
AATAGAATGTCAAAATTGATTGGTTCGTGGATGATGATGCGCGTATGTAT
ATCAATAATATGTTCCGGTCGCGTCATACAGTCacggaaatccttgcatt
tgcatggggtgagcatttgcaacGGTTTCAACGATTTTTCAgaccctgtg
caaatgagctagaacgtGTAAGGCAAAATGCgcaaaaattaacaaatctc
aactttaaaatgaaaatggcaTAAAACGAAGACGaatggcattttcattt
tctctttagaagattctttagccattttagaaaatttttgtctacgggtt
aaaattttgatctgtgcatttttttataatcaagtGTAACATTTTTCCAC
TCTGTGTAAATGCAACGGGTCGCAGTGATCGAGTGTATTTGCACGGGGTT
TTTTCGTCATTTTCCACCtgggccaaattgaaaagtcccgttcctgtcac
ggaaggaaatcagagccttttttggtctttttttgaaaaatggtaaaatg
aatgaaaatagtATTAGTCCTGAATTAAAGCCTTCACAGTACTACTACTT
ccaaagcaaaataaatttcattaaagTTTTTCCTCGTTGAATAATTGAAC
TTTGAAGGTTCTGTCACGGAAGGAACGCAGCGAAgacattaaaaaagaca
aaagtatgCTGATTCAGATTCCTGTGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATAGCCAT
TTTTACTATTCAGCTCATTTCAAAACCTTGGaactgtatttttattgttc
aattataatggtgataataattaggaaattttacaggaaagcttatattt
tttaagcaaaaaacgtaaaaacgcaaccttgaaagcaaatgagctacttc
caaaggctctaattagcatatttccatggtgctgaagcaattttgagcgt
ttagaacccgctgggaacagtagttttgccagaaaacaggttttcaggcc
tccagagccgcctgggcctacactgtaaacttacagcgctgtactggagc
cttagttaagcttattctgagctccatacagggttgagctggttcccaat
ggttctaaaccttgTAGGACACTCTCCTGCAATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaaaaattagacccattgaagtccaagatttctaaaaata
acaagatatttttaatccgtcacggaaggacaaggtgaaagtgtcacgga
aggacaataATTTTAGACCTTGTAAGTGAATATGAAGGAGGTTGCTTTGG
aatgtaatttcattttttgttaggGGGTACCAATAGTTAGAACTTGCAAT
AATATCAAGAATAGTGGACTTGCACAAAActggtgaaaaaactttttgtc
ttgaaattgtcacggaaggaattcgatatttgaaaaaaagtttctgcttg
cagtacttttttgttgttcgacttatttcaaaatcaataaaCCCTGATAA
ACCTATTAAACTAACTAGGGTATGTACttgttttaaaacaacatttcatt
tttgattaatcATTTTATTATTCAAAAGAAGGTCCATTATATTTTAACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTGGAAAATTTAAGggttatttaaataaaaaat
cacagttacttattttgtttgtaagatttttgattttgtgttttggttga
cgacttttcaatttggcccaCCTGTTGCATTTGCCGCATGTCGAGGATTT
CCGTGACTGTCATAACACATCCCCAAATCCAagatttttaatgtttaata
gaCTAAATCCCGAAGAATCCAGTCGGCAAAAAAACAGAATCCCTTGCTGC
CCTGTTTAAATTAAGCTTTTTACGCTAAAAATTCTTTCAGAGCTAAGAAA
CTCTCTTAAATGAGTCTCCATTACTCGAATGTCAcataattcgaataaat
tttcattccttGTAGCCGTTCGAGTTAGACTGTAGACTGTAGACTCTACT
GTACACACAAAATCTCgtatagtcatctggggtaattacgggacgatTTT
GACATATTTGGGCATTACTCTGAAAGTATTAATCCTAGAGATctgatttt
ttgatattttatttatcAGAGTATGACCTTTACACAAGATTTAttacttt
tccttgaaatttagtagatgctcctaaaatttattttaaaggtgTCCCAT
AAATACCCCGCATattggggtaattacgggacacccTCGGGGTAATTATG
GGACAGATATAAAATGCTATTGAAAAATccagatatctttccaaaaggCC
ATGATATTTGAGGTTTTGCATCCACTTGATGACTTAAAATCCAAGTGCTA
TCATTTAAAAGACTTTCAACAATATTAGTGACAGTGTCCCGTTTTTACCC
CAGCCTTTTTCCCATTTGGGGGTAATAACGGGACATTTCAATCAATATTA
TTTCTATAGAGCAATCTAGACCAAATTGAAGTATATTTAGATGCAAACCT
TTGCAGGTTTTGAAAGACTTAGAGTGTAGTTATGTTTCCATTAAACtaga
aaatcaagtttgtagttttcttataaaaaataaacacttcAAACTCAAAC
TTTAGTGTCCCATAATTACCCCAAGATTAAGATTTAACTACGGGGTAAAT
ATGGGAcacactttttagagaaaaGGTGCCTTGTTTGATAATGAGACAAT
TATGATTTCAAACCATAGTATCTTGATGTCAGAATTCAGTCAAAGTATAA
TAAAAGTTGATTGCAGCTCTTCCTGACTCTAAAGCTTGAAAAATCCCTTC
TAAAActacgaaatttgatttttatggtgacatgtgaaacttttgttgaa
acatCAAATGTATATGTTAAAATAATCTAACTAGACATTTTTCTAGCAGC
TAGAATCTCCAAAATCCTCTCCATCTAAATCCAAATTTATAATAATAACA
CCATTTTAAGGGGTGTCCTGTATTTACCCCTTTATTTTAactgtcccgta
attaccccagatgactataactaacgaaaaatttgaaaatctgaaTTAAA
TCCTCGCAAAAATTTACAGTCAAAGTTagtcgcgaaaataagtcccgcaa
aaattaaattatttttcgagGGAAGCTGTCTCacgaaaattaaaagtttt
gaagtttttttaaggcttttgaGTAACTTTCTCTGCCTATCTCTTTTCTA
GTTACAATTTATATAGTCGCGAAATGAAATAAAgaaggccattttcgcga
aatttaatccacatgaaaattttaaagacccTTCATTCgcgaaatcttta
aattctcgtctcgcgaaaattagtacacgCAAAAATTTATTCACTTAAGG
TATTGGGACAAatcttttcagccaatttctttctgatctcgtccacaaac
tccactgaaagcataCCTTTGCACCTCTCTTTGCACCTTTCACCTTTGCG
CACAAAGTCGCAACTTTAAAAGTAAAGTTTTGAACTAGCTTTgataaaaa
ctcttttttcattggccagcgCCCTGCCTTTTCCTTTGAAATGTTGCAAC
TTCATCGCgtctttttaactttcgtttcgattaacaatatcaatgggagt
atgaacaaactcaatgttggtacaaataaacaaaaattcgaCGATGACAG
GTGGGAAGGCGAGATTAAGGCGATGGCAGACATGATTGGAAAAAAATGTG
TTTTCGAAGATGTAAAAGTTGGttttgagaaattttggccaataagagca
aggggggagggggtctgaagcttatcAGCCCAAGgccaataaaaaattca
aaagttttttgtcaaagaCCCCCTTAGCTATCGAAAAGATTTTCTGACAT
TATTGCGACTGGGCCGACTCGGGATTTATGTTTGAAGGTGAGTCGGTCAG
GCGACGCAAACAGAACTTATTATTGATGGTCGCCATATGTGTTGTTTGAT
TGTCATTTGACTGCGTTTGATTGCTCTATGTCTTAAAGAAAGCTAATTTC
CAATTAAAAGCgagaaaaaaagaatgacaGAGAAAAACTATTTTGGTTAT
GAAACTCAATGGAGTGTGTAGTCGAATCCTATTCGAatgcaatcaaatct
caatcaaGCGCAATTGAGTCTACGAATTGGGATAATTTGCAAATGAGATT
TGATGTGGTTCAATAATCAAAGTTCAATCAGTTAATTGCCTTTGGAGGTT
ATGTTCTCACAATGCATTTTCCAATTTGGAGGAAAGTTTCTCCGATTTAC
AGAAccaatcttcaaaataaaattttaattttcaattttggaaaacctga
aaacccgttttttttattcagatttcGCTACAAAATTTTTATCTTACAGA
CAGGCTAGCTCCAAAGTTAAAAGGGGTCAACCTTTATGCCAtcaaaaata
gttaaaaaagaaggaaaatctCACTTACAATTGAAGCTCCTCGCAGTGTT
CCAAAGTCTTAAAAATTACTAAGAAACCATACAATCATCCATCACTTCCG
CCATACTTTCCAATCGTAAGCCAAGAAATATGATTTGTCACGTGACCCAA
TTGGCAATTACCCTCCCTGCCCTCATGGTAACAACCGCTATTCATATCCC
GCCCTGACTCGCCTCTGAAATCCTAAGGTCACggctcaaaaccacatgtt
tttCCGTGGAAATAAAGAAGTATTTCAATGTTAGCAAAGAAAAAGAACGC
GAAAGAACATTTAGGGGAAGGGTAATTTCAGGcctttaaaagtttatttt
tttcaagatttttttggcCGTTAAGAGGAAGGGGGAAAGTCGttaaaaaa
ggattttcttttGTCGATAGCCcctaaacattccaacaacttccatcaaa
atgatctgcAGCAGCTATTTGAGGATTGAGGCTTACTGTATGTGTAAGAA
AATACTATAAatctaaaaggttttttttttgcataccACTAACCCATTTT
AGAGAAGTGGGTTTTAAAATACACCAGTGAAATTTTTGGGGACATTTTGA
CATGAGACCACCCATTTTTGATCTTCTAAGAACAAATTTTGTCTTCTCAA
GACCATTAAACATTTCTGATGTTTAAGATTTTAGTACCGGGGGAAATACA
Ggcgtaccttaaaggaagaaattttggcggaatttaatttggcagatggc
tgaaaaagttttttagagggaatttaatttggcgaatggacgaaaaaact
aaatttagcgggaatttaTTTGGCATctgctgaaaaatttatccttattc
cgccaaaatttcttcctttaaggtacaaGCTTTTGCAAGTCGAAACTTTT
GTtatttgacaaaatagaaaatgtaagatttatggCACTTTGTAGCCTGT
TTAAAAAGCCTCTTAAGCCAAAAGTTctaatcgaaatttaaaagtaTTTT
CCCTATTTCCcatgatcaatttttcatgtGAATATTCTCATTTTGGTGTG
TTGATTCACAAAAGTTTATGCTGGCATGAAGATTTGTCAAATTtgtgaaa
gtaaatgtcgttaattttgcaattttccaccTCAAGAAAGTTTCTGCTTG
TGAAAGTTTTATGCCTAAAGTACTTTAAAGGGATGATACTATGGAGGTAT
AGCTTATAGGGTAATGTCTAGGTCTTGagattttttagtttgaaatttta
ctgaTTCAGAGTTCTTCAATGTTTTTGGTTCATTTCtgcaatttttgacc
atttcagGCGGAGGACATTCAAGAGAGTACTGTGGTCAGGACCTCAATTA
CAGTCTAAAGTTAATAAAATTGATGTGATTGTCCAAAAATAATCCCTCTA
GTGTAAATGGGGCATATGCACAAGGTCTAGGAAAAGGCTTATCTAGTGAT
GCATGGATTTAGGTTATCATTTGCAGCTATTTTTCTTCCCAAAGTTGTTT
TTTAGAATTAGTTTTTGAGGTCAGCACTGGTTCACActaataattttttc
atttatggttcaaatataaaaatctttaaaagtcATAATTATTAGTTTTT
gtgatgaaaaattttttcaggatttcaaattttccttttttttgcccTAC
TACCCTCTATTTTTGTCCAGGgagaaaaataccctaaaaAGTGCCAGTAT
TCTGGAGGGAAAATGTCCTTTAATAGACACCCATCAGCATGAGACTTCAC
TTGCAGAAAACTGTTCAacttcttgagctgtacttctTAATGACCCCTTA
TTTATTGTTAATGTTTTGATAGACGCGGTTGTTAGGAGTCTACATTCCTA
GTAACCAGATAAAGGGTTAATTTGAAATACATTTGTTTACTTTATTGCTT
ACACATTCAAATTCATGACAAGGTCATATAACTttctggtttcttttttt
ttatctgatCTCTTTTCCTTTATCTTGAATCCTTTCTCCCTCTTCCTTCC
AATTTAATTTGTCAGTaccattgaaatgaaaaataaatttctttaaaaat
gactTAGGAATTTGTTTGCATTTTCTTTAATCCTCATACATTAAAAGTAT
AGGGTGTTTAATATATTCTGAAGACTAAAACCCtgtcagaatttttttaa
taatttcagTAAAATTGAGTACCACCATTTAAATCCCAAGGAAAGTCTTT
AATAATGGTGCctcaaaaaattggaaacattccTTCCCTTGTCTGATTGA
AACAAACCAATATCTAATCTCTTtggatttcaaaattattttgaaacttc
acttattttttctaagctaattttttcctgttaaataaaaaaaattttgg
ttgagAAACAACTTTTCTTGTaatatttcattctttttcaaaaatttctt
attctattttttatagAGCTTGTGGTTGAGCAATGGGTGACCAAACGCCA
ACAACAACCAAGATCACAGCACCAACATCTGTGGCAATGCAGAAAATTGC
TTCTCTACCTTCGCTTGCGGCTAGTCTGATCTCCCCTGCAGCTGTCGCCA
AAGCTTCCATCTCAAAACCGGCCACATCAACAGCATCCTCCACTATTGGT
CAACAAATTGCTTTATTGAACAACTCTGGTGCAAATACCAATATCTTGAT
CAAGACGACAAAAACAAACAGCAGTGGACAGCCAACTTATGTTGCAATAA
GCATCCCTACTCAGAACACATCTACCTCTCCTGGGCAGAAGCAATCCTTC
CCGTTAGCGATACATcagttaaaaattaaacaacaacaacaacaacaaca
acaaacccAGCAACaagatgatgaagaaaaagaagtcaAAGCTGAGAAGA
CCACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046010-exon-scaffold_105-1491911889:610989..611009 | TCONS_00046010-exon-scaffold_105-1491911889:610989..611009 | Clytia hemisphaerica | exon |
| TCONS_00046010-exon-scaffold_105-1510915933:610989..611009 | TCONS_00046010-exon-scaffold_105-1510915933:610989..611009 | Clytia hemisphaerica | exon |
| TCONS_00046010-exon-scaffold_105-1575043694:610989..611009 | TCONS_00046010-exon-scaffold_105-1575043694:610989..611009 | Clytia hemisphaerica | exon |
| TCONS_00046010-exon-scaffold_105-1491911889:619805..620245 | TCONS_00046010-exon-scaffold_105-1491911889:619805..620245 | Clytia hemisphaerica | exon |
| TCONS_00046010-exon-scaffold_105-1510915933:619805..620245 | TCONS_00046010-exon-scaffold_105-1510915933:619805..620245 | Clytia hemisphaerica | exon |
| TCONS_00046010-exon-scaffold_105-1575043694:619805..620245 | TCONS_00046010-exon-scaffold_105-1575043694:619805..620245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:610989..620245 + |
Blast
The following BLAST results are available for this feature:
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