TCONS_00046013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046013
Unique NameTCONS_00046013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046013 ID=TCONS_00046013|Name=TCONS_00046013|organism=Clytia hemisphaerica|type=transcript|length=2238bp
AGTACCGGTGGGTTCGGGGCCGAGTGCCGGCGGGTACCCAGCTCATTTTT
GGAATTACGGAGCTAGTGGGAAGAGGGTCAGCAGTTTTCCATATGGTGCA
GGAGGGACTGGTAATGAGTCGATGTACTCTCAACAATCCAATCTTCACAC
GTACATGGACAGCCATGGAAATGCTTCACAAAACCAAATGTTCCAGTCAT
ACTCCGCCCAAGGTGGTCATCCAGGCTCGATGGGGTTAGGCGTCAGTCCA
CAGGCTATTGGTGTGGCTCAACAAGCACAATACTTGCAACCAGGACAAGC
AGCAAGCCAACGTGTTCCCATCTCCCACACAACACGTGCCTCGCCTATCA
CTGTGCAATGGTTACTGGAGAATTATGAAACATCTGACGGCGTAAGTTTA
CCACGAAGCACCCTCTACCATCACTATCTCCGTCATTGCGCCGAAAACAA
AATCGACGCCGTCAACGCAGCAAGTTTCGGGAAACTCATTCGCTCCGTTT
TCGTGGGATTGAAAACCAGACGTCTTGGTACAAGAGGAAATTCCAAATAC
CATTATTATGGCATTCGTGTCAAACCCAACTCACCCTTGGCTCGCATCAC
CGATGATACCCATGTTGCATTGCGCGCAACCCCTACAAGCTCCAAACGCT
CCATGGGCTCTAATAATTATGATGAAGAAAGGCGGACTGAGGGTGCCGCC
AGCAATGCGGAGGATTCAAGCGCCCTTTCCGCCCATCAACAATATTTGGG
AGATGTTGGGGATGGTTTGCCAGAGGGTCCTGTCATCGATCTCACAGAAC
CCCTTCCTGAAGGactgaaaaaagaagacgttatcACGTTTGGAAATTAT
TACCGCAGCCATAGTGAGGCTTTGTTGGAAGTGATCAGCACTTTACAGTT
CGATTTGGTGGAAGCTCTTTGGCAATCCTTTTATAAGAGTCCGGCAGCCG
CCAACAAAGCTGACAACGGAACTTTGGATAACAACGAGTTCAATATCACT
AAGAATGACCTCATCACTTTCTGTAACTACAAACCTGTCCAAGTTTTCAT
CAAAGAGACCGATTACATTTTGTATCAGAAACTTGTCGGTGTTTTGGTTC
CGGATGTTTTGAGAGCTGTGCCAAGTGCGTTGACGCAAATCGTTCGTAAT
TTTGCAAAGAGTCTGGAGAATTGGTTGGTTGGAAGTATGTCGGAAATGCC
AAAAGAAATCTGCAATGTTAAAGTTGCAGCTGTTAGTGCTTTTTCCCAAA
CTCTTCGACGATACACATCGCTCAACCATCTCGCGCAAGCCGCGCGGGCG
GTCTTACAGAACTCGCAGCAAATCAACCAGATGTGGAACGATCTGAACAA
AGTAGACTTCAACAACGTTCAAGAACAATCGTCATGGGTTTGCCAATGCG
ATGAATCTCTCATCGCCAAACTCGAACAAGACTTCAAACAAACTCTTGCT
CAACAGCATTCACTGGAGCAATGGGCCAAATGGTTGGAGTCGGTGGTTGC
CATGGTATTGGAACCTCACCAGGGACAAGAGTCGTACCCAAAAGCCGCTC
GTAACTTCTTATTAAACTGGTCTTTCTATTCTTCAATGATCATTCGCGAT
TTGACGCTACGTTCGGCGGCGTCTTTCGGTTCGTTCCATTTGATTCGTTT
GTTGTATGATGAATACATGTTTTATTTGATCGAACACAAAGTGGCCGCCC
ATACTGGCAAGTCGCCTATGTCCGTCATGGCAGAGTGTGTCGGtggaatg
acgtcatcaagtaaCGGTAACCAAGGCAACGATGATGAGGACGAATTGGA
CGAAAATTCGAACGACGGTTTGTCGGCACTGACGAGTGGAGACGTCTTGA
AGACTGGTGCCAATCTCACGATGTCACAAATTAACGAAGGCATGGAGCCA
GTTGCTAAGAAACTAAAACCTGATCATTTGGGTTGAACTATTActttata
ttttataattttatttttttggtaaaatttgaaacaattttaaaaagatg
tagAAGCATTGTACATattatatttagatttttttcctttgatgacaatt
tttttttttggtttgttcTTTGTCATCAattattatcattatcatttgta
caaaattttccttttatcTTGATCAATTTAGATTTGTTTAAAATGTTATT
TGTGAAAattattgacaatttttttgaatagaAATTTTACGTCAATCATA
TTATTTGGGTAAAGACATTTTTCAGAATAAGACAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_105:631707..645750+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046013 ID=TCONS_00046013|Name=TCONS_00046013|organism=Clytia hemisphaerica|type=transcript|length=14044bp|location=Sequence derived from alignment at scaffold_105:631707..645750+ (Clytia hemisphaerica)
AGTACCGGTGGGTTCGGGGCCGAGTGCCGGCGGGTACCCAGCTCATTTTT
GGAATTACGGAGCTAGTGGGAAGAGGTAAGAAAGTTAGTAATGAAAGAAA
AGGgagaaattaaatatttaaacTCGTTTCAATCATGAATCTGATTTCTT
TCTCATCGTGATGAATATACTGAATGGCCTGAATAGAGTTCGTTTGATAT
TTTGTTGTACgactttttttgtgaattttaaaaGTGAGTTTCATTTGTGA
AAGAGTCTGTTACTAAGACACAGAAAGGCGTTGTTAAGAACTGTGAAGTG
AAGATGCTGAACAAATATGCTTCAATGTTTACTGCCAAACGGTATTCTTC
ATTCTTCTCTTCGTTTGTGTAATAAACAACTTCTAAATGGTCTTGTTTAC
GTAAATAGAAGGGTATGATTTAAAATACTTCTTTAGGCATGCATATTGTT
ACTACAAGTAGTTTTTAAGCATGAACTTAACTGTTTTTATGGCTTAGGCA
TCAACGCTTTCTTATCGCTAAGGAAGCTTTAATGTTCGTAAGATTAAAGC
TGACAtgtcagaaaaaaagtttaaagtgcGCTCATTTCTCTTGCGTTCCT
TTGATTGATGTGTATTGTGCGTTGATGCTCTTTTTATTAGCTTAATTAAC
GACGTCGTCAAGGTGATTACTGGTTGCTATGGTGAATAAGATAAAGGTTG
ACACGCCATTAATTTAGCGCAGCGAGAGAGCCAgtgaaaaggaaaagaaa
tgCGCTCTTTTTTGATTCGTAAAGGAAATTATGGACATTTGTTTTTGTGA
AGAGGAAGTCAAGCTACCTCAATTCTTGCTCTCTAATACCGTCTGATATG
TTACTCTCCGTTGCTAAGCTACCGCAAACGGTCGTTAGGTCGTTAATGAC
ATATTTCCATAAATAAAAGGTTTTGTTTAGAGATGACCTTGATTAGAATG
TTTCATCTTTGTTGTGTCAAAACAACTTTGCTATGATTTATAAGAGCAGG
AATGTCTCCTGGGATCTTAAACAAGAAATACTTAACTTCCATAATTCGAT
TAACTGGGTGAGAAATAGTAATATTGATAGTATGCTTAAAATTATCGGTT
GCATGGATATTTTAAAAGTTAACATTTTTTAACAGTTGTAATGATAACAT
TAAGCTTACATCTTActatctttcttttcttcttctttttgcaGGGTCAG
CAGTTTTCCATATGGTGCAGGAGGGACTGGTAATGAGTCGATGTACTCTC
AACAATCCAATCTTCACACGTACATGGACAGCCATGGAAATGCTTCACAA
AACCAAATGTTCCAGTCATACTCCGCCCAAGGTGGTCATCCAGGCTCGAT
GGGGTTAGGCGTCAGTCCACAGGCTATTGGTGTGGCTCAACAAGCACAAT
ACTTGCAACCAGGACAAGCAGCAAGCCAACGTGTTCCCATCTCCCACACA
ACACGTGCCTCGCCTATCACTGTGAGTGAACATCTTCACATTTCTTTCTT
CGAAATACGTGTTTTGAaacctttggatgtttttagctttttgagtttta
aacctacaaatgttcttaacatgttcttattttcacaattttgtgagtat
agtttgttctgataaaaaacgtgtagctgtTAAACTGTCTTTCGATATCC
CTTACAATACTTTTTGAGGATGATCGAgtgatgaaaatttttgagtttAA
TTTACGCCTGAGAACGACTTTCTCTACTTTAAATTGTGCAACTGAGAGAG
GACGCTTTGAAGAAATTGATCGTCAATAGTTTCCTCATCGTTTCCCGTTA
TTGTCCGGGAGCTGGGGGAGGTCAACTATGACAGTCGTAGAGGCACGTGC
AAACATATATCATCATGCAGCACAATGCCTGAAGTTTCCGAATTTACTTG
TTTGCCGTCCGAAATTTTCTTGTAGATGTCTATTTTACGGACCGGAATGC
AAAAATAGCAATATATTTTTGACGTCAATTGTGTTTACTAAGTTATATCT
AACTTTTAAACAGTTTATTGAATTCAAATGAAACTTTGCCAATCTGTTAC
TGATAAATAGGGCTAACTCTCAATAGCAAAAACATTGCTGTATCCCTtcc
agtttttttcatttcttggtAATCATGCAAAAGTTTCACCTTTTTTTCTA
CTCCTACCGACTaacgttttcaaaaaaacatgttttaaaattaatttttt
gacgtattCTTACATTGAATTAATCTTTAGCATGTAAGTAGTCgctgttg
aaaattttgtttcaaaagctTAAGTGAAactcaagatattcaatttcaaa
gaCAACCATGTATaatcaaaaacataacaaaatgataaaactgacgtcaa
aaacgaaaagtaaaaaatacagaCCTAGACGtcaaaatggttcaaaaata
cccagctttcgttttttatattCTAATATTTGGAGAATACCAAAACGCCG
TACAATGTAATACATTACTAAACAATTTCCCCCCAAATAAGTTTTTGAGT
ATTAATAAGATAATAAGATAAAAGGGAAATTGGGCTATGGATTGAAAGGG
ACATTGCAGAGGGAATGCTCTGACGCCCATTTCCCCAATGGTCACGTGTA
ACTACCAGATGTCATTGGATTGTACAATGTAATGACTTCTTTCTAAATAA
AGATCACAAATAACGGAACCGTTTCATTTCTGGACTGGTCACGAGCAAAA
AACCACGCTTTTTAGCCGTCCTCTGTAAAAAAATGGAGTGGGACAGTCCT
gtcaaaaagagaagaaagaaaaacataacGAAGAAGAAAGCAGAAATATG
CGTTGTTGGCTGCCGCAACGTTAAAGAACCTTTGACTTGTTTTTCATCTA
AATCATGGGaggtaaaaagatttttctagCTTTTCTCTCTAATGAATGAG
TTCCATTTCTGAGACGAATGCGTATTTTTGCCGTGGTTTCAGATGGCAGA
TGGTCAaacatgaaataaaactagACAACAAGGTTTTAGCTGAAAAGTCA
ACTTGCTTTTAACTAATAATGGATTTGActactgtttttattttgattgc
cgtttttattttgattgtcGCTTTTGACAAACNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTACCAAACCTA
ATTTAAGTAAGTTGAACCTTGATCATATGAATAtgcttttcattttttgt
tcgcAGAAGTCAACTATATGGGGATGGGCCTGGCAAACTcgattgagaca
gggttatcAATAGCTTGATAGATACTCACTTTTTGAGAACAGTGGGCTTT
AACACTAGTCagtgttttttgaaatttaatctcACTAAACGCCTGCGATA
AACATTAGTAGCACGTGACTAGTGTTAAAcaccacttttttcaaaatgct
aaaatatttaGAACtagttttgattgtttccaaaCTTTAATATAGCTACC
ACCATCGACACCGACACATCGTGCAtcttttgtaacaaaagaaaaacatc
gcAAAATGGCACAGGATATGAAATACTTCTCCAGTGTACAACTGAATCCT
CTCTTGAAATGATTTCATCGATAATTGGTGAGAAGTCAACAAAGGAGATA
AAAAACGCATGGTATCATCGATCATGTTACCGAATTCGCTCGAAGCCAAG
TCAAGCCTTAAATGATTGTTCAGATGAAACTGATTTGACGCGTGAAGAAA
GTTTCGAAAGTCTAAAAGCCCATGTTACCAAAACCATCATTGAAAAGGGA
AAAGTTGTTAAAATCAACGATCTCCGGACTTTCTACGAAGATGACCAGAC
CAGACGAAATCTCGAAGTCAAAGGAACCACAAACCGACTTGTCAAACTTC
GATTACAGAACACCTTTGGAGAAAAGCTtaccttttttaagaaaacggaA
ACATCCTGCGAGGTGGTGTTCAACAGCGCGGCGCTAACGATGAATATCGA
AGcaaaatcaaaagaagaaaaagtcaaagaagTTGCTCAGCTCATCAGAG
AGGAGATCGAAAAAATGCCagcacaattttcaaaatggcctCCGCCAGCA
GAGGAATTGAAACATGAAAAAGTTATCATTCCaccatttttgaaaatgct
ACTGACTTCCCTTTTGACCACCAAGAAGCCATCCGACCGCACTGTTAGAT
TAGTGAAATCGTTGGGTCAAGACATCATTTACAACTTTTCATCCGGTAGA
ACAAAAACTGTCAAGCACTGCCAAGTTGGTTTGTTCACTAAACGAAAGAC
CGGATCAAAACAAATCATAAACTGTTTGAACAAGCTTGGTCACTCGACGT
CCTACTGTGAAGTCAACCGTTTGGAAACTGCGTTTGCTGAACGAGAGAAT
TGTAATAAATCAATGGCAACTTATCTTCCATCTAAAGTAGTTCCTGGTCT
TTTTGGAACTTTTGTTTATGACAATGGTGACCATAACCCTGAAACAATAA
ATGGCGAATCTATGCATTGTACCAATGGCATCCTGATCCAAAAACCGTCC
GCTAAACAACAGCCAATTCCTCAAAAGCCTGTCTTCAATTCATATTCGAA
TAAAAGATCATTCAATGGCATAAGAAGCGATTTGGAGCCGTACTACTCAG
TTGCAAGGAGCAGCCCAAAGCCAATCAGCAATATcgcctttcaaaatttt
accaCCGTCAAAACACTCTCCAAGAAAGAAGATTTCATTTGGATCATAGC
ACGTCAACAGGCCAGTCAACTTCAAAAACCCTTGCTTCCTGGTTGGACAG
GCTTCCACAACCTCACTAAACCTGAAAACAAAGATCCACATTCAGTCCAT
TACTTACCATCCATTGATAAACCACCAACAGAAATGTCCACAATTCAAGA
GATTCTCAAACAGATCAAGGTCAAATCAGAAGCAATCGGCCTTGAGNTTG
TTTGAACAAGCTTGGTCACTCGACGTCCTACTGTGAAGTCAACCGTTTGG
AAACTGCGTTTGCTGAACGAGAAAATTGTAATAAATCAATGGCAACTTAT
CTTCCATCTAAAGTAGTTCCTGGTCTTTTTGGAACTTTTGTTTATGACAA
TGGTGACCATAACCCTGAAACAATAAATGGCGAATCTATGCATTGTACCA
ATGGCATCCTGATCCAAAAACCGTCCGCTAAACAACAGCCAATTCCTCAA
AAGCCTGTCTTCAATTCATATTCGAATAAAAGATCATTCAATGGCATAAG
AAGCGATTTGGAGCCGTACTACTCAGTTGCAAGGAGCAGCCCAAAGCCAA
TCAGCAATATcgcctttcaaaattttaccaCCGTCAAAACACTCTCCAAG
AAAGAAGATTTCATTTGGATCATAGCACGTCAACAGGCCAGTCAACTTCA
AAAACCCTTGCTTCCTGGTTGGACAGGCTTCCACAACCTCACTAAACCTG
AAAACAAAGATCCACATTCAGTCCATTACCTACCATCTATTGATAAACCA
CCAACAGAAATGTCCACAATTCAAGAGATTCTCAAACAGATCAAGGTCAA
ATCAGAAGCAATCGGCCTTGAGAGTGCTGATGCTGTCTTCGACCATGCTA
TATATGCCAAAGCACTGGAGGTTATATTGGATCCAAAGAATTCCGAGATG
AACGAGTTTATCAACCTCAGAATGGGAGGATTCCACGCCAGTCTTGTTTT
CATCGCCGTAATTTGCAAGCGATTCTATGATGCTGGTTTGAAAGACGTCT
TTGTCGAGACCAATCTTGTCGGGTCAGAAATGACGAATTCCGTTCTGAGA
GGGAAAAAGTACAACAAAGCTGTAAGGGCGCTAAAAATCATGCACGAGGC
TTTacaacgattaaagttcgaggCGTTTGAGAACTGGCTTGAGGAGAACA
AAGCAACCGTCAGGCTGACTGAGGTGTTTGAGTCAAGCGATTTTCACATG
TTTTTGGAAAAGCAGAATGAGCAAACAATGAAATCTGCTACGACAAAAGC
TGAAAAACTTTTCGAGTTGTTTCAGATATTCGAAGCTTCGATCAATCACG
GTGATCTAGGACCAATGGCACAATTTTGGCAAAGCTTTATCGATATGAGT
CAAACTTTGTTGGATTACATAAAGTCAATGCGCACGGGCGATTGGGATCT
CCATCTATCATCATCAGAAAGTATGCTGAAGTGGTTTCATGCATATGACC
ACACCAACTATGCTCGCCATTTCACATATTGTTGGTCAAGTCAACAAAAC
CTCTCAAAAACACACCCGGAAATATTGAAGGAGTTCAAGGAAGGAAATTT
cgtgtgcaaacgtactgcggGCTCTTTCAATATGCTACCACCCGACCAAG
TTATTGAGCAAACAATAAACAAGGATCAGAAAGGACCTGGTGGCATCATT
GGTTTCAGTACCTCAGAGAATACAGTCCAACGATGGATCTTAACAAGCCA
TATCGCCGCGGAGATTTCAGCTGACTTGAAGGAGAGTCTTGATATTGAAA
CTGCCAGCTCAAAACCGAAAGATTTAAACGAAACGATGAGATCTCGTGAC
GAAGAAGACATCATCAAGTGCATTGATATGATTTCTGCACGCAACAATCC
GTTTGTAAAAAGCAGAAAGCTGATCGGTCTCTCGTCCGGCGTGGTAGCCT
CAGACGATATCACAAACGATCTTCTCACTGCAGCAGATGTTGGTGAAAAA
CAGCTGAAAAGATTCGTTGCGGAAAGAATTCAATCGTCCAAAATCAAATT
CCACGACGTAATAAAACGAAACAACCTGAAGACCTTCagctcaattttca
aaacaacgcAGCATAAAGTCAACGACCAAATCATCACTATCAAAGCAGAC
CGAAATACATTCTCCCGTTTAGTCGTCATACAGAGTAGCAGATCCATCGA
CCTGAGAGTGGTGCTCAATTTCGAGCTCTGCTCTGTCCCTCTCTCACTGT
CCGAACCGAACGGAACTCTTGTCAAGAACAACAAGGCCAACTTATTCAAT
TCATTGATTGCTGATATCCCCACTGTGTCGTCTATTCCTTCAGAGCATTC
TGTGATATTTGATGGAATGGTCTTGCTGCAAAAGCTACCCAAAACTCTGA
AGTCATTTGGTGAAGTTTCTGACTATCTTCTGAAGAAAGTTTTATCCGGA
ACAGCTAAACAAGTATACTTTGTGACGGACCAGTATCTTCAAAATTCGAT
CAAATCAATGGAACGAACCAAGCGATCTTCAATCGGCACAATCCGCGTGA
CAGCTCAACGGCGAGATCAAAAGAAGCCCAAACAATTCAAGCAGTATTTA
CGGAGTGCAGAAAACAAGATAGAGCTGATCAAGTTTCTGGTCAATGATTG
GACGTCTAACAAACTTGCTATCACActccttaaaaataaaaagctttttG
TCACGATTGAAGACCGTGCTTATTCAATCAATCTAACCAGCACCAAAAAA
ATCGAAAGGAAAGCAGTCCCTGAGCTGTCTAGTCAACACGAAGAAGCGga
cacaaaaatgtttttgtgtgcTGGACATGCAGCTAGAtgtgggtttcaaa
acatcaaaatcgTTACTGTCGATTCAGATGTTGCTGTGCTGTCAATATAC
TACCAGAATTTGCTCCAATCGTCCCTATACTTGGAAATCGGAACATCAAC
GAAAACGAAATTGTTTGATCTGAAGAGGAACATTATCGACAAAAATCTCC
GAGAGATTCTACCAGCTCTTCATGCAGTCAGTGGATGTGATTCAACAAGT
GCATTCAGCGGGATCGGAAAGGTACAACTACTTTATTATGctatgaaatt
ttttaacaaagagCATGGAGCTTGAAGGCGATCTTTTTCAACTCAGAATT
TAAATTTGAGAATTCCTTTCCGTATGCGATTCTTATTAAATATGTTATAC
TGTGNATTTGAGAATTCCTTTCTGTATGCGATTCTTATTAAATATGTTAT
ACTGTGGCATTCTTTGACATTTTAAGAAATAAGTGTTTCAtctgttttga
ctttttttatataatatatattttatacatTTTAATATATTATGATAATA
TTTTTGTAGGTAAAATGCAAAACAGTGATGATGTCGAATAAAAGATTCAT
AGAGGCGGCTAAATCAATCGGCAACAACTACAACATATCAGACAATGTTA
TCAACACGTTAGAAGAATACATGTGCAAACTGTACGGGACTGATCATACC
AATATCAACGAAGCCCGTTATCATTTGTTTACAAAGTCAAAAACAATTCC
TGATCCGAACAGGTATGTTTTCAGTCCACATCcttgaaatttcacaaaaa
gtaTCTTCTACCTATAGACCATCCTTTGTTTATTTGTGATTGTTTGTTAC
CGTTGACATAAAATAAATAGCTACAAGAGGCTAATGAAATTCAACCTATT
TAAAGCTTACAAAAGtcttaaatgaaatgaaatatcCTTTTGGTGTGGCA
CTAGCATTAGTAAAGATCTGGAAATacaatcgtttgttttatttctactt
TAAGACTTCCACCAACGAGAGACGCATTGTATCAACACATCAAACGAGCT
AACTACCAAACCCGAGAGTGGAAATTGGCAATGGACCGGTTTTATCAATG
GGAATCCCCTGTTGGGCATGGTACGCTCATATTTATTGCTAATCTTTgac
aaaatatatcaaataaGCTAGTAAAGGTAGTAAATCGAACATAAAGATGT
CGGTAGGGTTATGATTAACAAGGGTTATTTTGGcctatttgaaatttctt
cttgTTTAAAGANCATTTTTGaccaaatttatcaaataagCTAGTAAAGT
AAAGTAAATCGAACATAAAGATGTCGGTAGGGTTATGATTAACAAGGGTT
GTTTTGGtctatttgaaatttcttcttgTTTAAAGAGATGCATTTTAAAT
CTTTAGGATGGATGGATACAGGAGGCGTACTTAATGTCAACTGGATGGAA
AACAAGCCCGCCCCTGACACAGTTCTCGAGTTTGCATCTTGTAAGTGCAA
GAAAACTAAATGCTGTAACAAGCAATGTAAATGTAAATCGCTTGGACTCC
CTTGCACCGATTTATGTGAATGCGTGAACTGTGAGAACGAACCAATTGCC
TCTGAAGAGCAGAAAGACGACGAAGTCGTCGGTGATGACGAGGGAATGGA
CGATGACGTAATCGATTTTGACGATTTATTGGATGAAGGCGATGACAAtt
ctttttataactttttatagcttttttattccttttttactCAGAAAATG
AGCCTTATTAgttaaaattttctactttgttGCTATTCATTGCTAAATCT
TTTAACTTTCATCCAAATACATTTAATGAAATGTAAGCGAGTTTTTTATT
GAAGATGTGCATCATTACCAGAGAAATTTACTATGTTAATATTGGTTTTG
AATGTAattttaattgataattatTTTATATCACTGTTTATAACAATATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATATGTTTGCACGTGCCTC
TACGACCGTCATAGTTGACCTCCCCCAGCTCCCGGACTATTATTTATCTT
TTACACTTGTTCTTGAAATTGCgtcaaattttcttcttctcccTCATCCT
CCAGGTGCAATGGTTACTGGAGAATTATGAAACATCTGACGGCGTAAGTT
TACCACGAAGCACCCTCTACCATCACTATCTCCGTCATTGCGCCGAAAAC
AAAATCGACGCCGTCAACGCAGCAAGTTTCGGGAAACTCATTCGCTCCGT
TTTCGTGGGATTGAAAACCAGACGTCTTGGTACAAGGTGATTATTCCTTT
TCATAACATTTGAAGTTTTAAGCTATTTCGTAAAGCTTTTGTGAAAGTAT
GCTTGAAAGTTACGTGAAATTATGCTTGGTATTGAAATTTGGACGTTAAC
TTTTATTGTCTCATAAGCTTTCTTAACCAATCAGTGAGTCCTTGTCCATT
TTTCACCTTTTCgtcatttttaattgttttattcTTCAGAGGAAATTCCA
AATACCATTATTATGGCATTCGTGTCAAACCCAACTCACCCTTGGCTCGC
ATCACCGATGATACCCATGTTGCATTGCGCGCAACCCCTACAAGCTCCAA
ACGCTCCATGGGCTCTAATAATTATGATGAAGAAAGGCGGACTGAGGGTG
CCGCCAGCAATGCGGAGGATTCAAGCGCCCTTTCCGCCCATCAACAATAT
TTGGGAGATGTTGGGGATGGTTTGCCAGAGGGTCCTGTCATCGATCTCAC
AGAACCCCTTCCTGAAGGactgaaaaaagaagacgttatcACGTTTGGAA
ATTATTACCGCAGCCATAGTGAGGTAGGGaaacttttccttttttcaagT
CTCAAGTATAAgttttcataatttgaaacgAACCCAACAATTATCTTCtg
ttttgaaggaaaattatcaaaatagtAAACTGCTAAAActgttttttctc
ttttaaaaaaattaaatgaaaaggTCTAAACATATAACCAATTGTTAACC
TTTTCTTTAGGCTTTGTTGGAAGTGATCAGCACTTTACAGTTCGATTTGG
TGGAAGCTCTTTGGCAATCCTTTTATAAGAGTCCGGCAGCCGCCAACAAA
GCTGACAACGGAACTTTGGATAACAACGAGTTCAATATCACTAAGAATGA
CCTCATCACTTTCTGTAACTACAAACCTGTCCAAGTTTTCATCAAAGAGA
CCGATTACATTTTGTATCAGAAACTTGTCGGTGTTTTGGTTCCGGATGTT
TTGAGAGCTGTGCCAAGTGCGTTGACGCAAATCGTTCGTAATTTTGCAAA
GAGTCTGGAGAATTGGTTGGTTGGAAGTATGTCGGAAATGCCAAAAGAAA
TCTGCAATGTTAAAGTGAGTGCTTGTTTGCTGAATAGTTAATACttcgtt
aatttttgacccagGGTTGAACAGTCATTAACTTTTTTCACTAGCTGATT
TTGGATGTTTAGAAGAGGAGGCCTGTTTGACtacaaatattcaaattttt
aaatcaatgtACAATCTTGAATGAACAAAACTTGATCTTAGAATAAAATT
GCTTCTTGGAGAAAAGAAAGAAGCAATCTCTCTTGTATTTACTCTATTTT
CTCTAAAACTCTCGATAACTTTTGACTTCCATTCAGGTTGCAGCTGTTAG
TGCTTTTTCCCAAACTCTTCGACGATACACATCGCTCAACCATCTCGCGC
AAGCCGCGCGGGCGGTCTTACAGAACTCGCAGCAAATCAACCAGATGTGG
AACGATCTGAACAAAGTAGACTTCAACAACGTTCAAGAACAATCGTCATG
GGTTTGCCAATGCGATGAATCTCTCATCGCCAAACTCGAACAAGACTTCA
AACAAACTCTTGCTCAACAGGTAAACGATGATGATTGTTTTTTCTGTATA
ATCGTTCTCCGCTCATTGAGTGTGCCCAAGTCGATTAACAAATTataaaa
agtgatgaaattttagttttttttatctcTTCATTCAATAGGCTGATTAT
GAATTACAAAAACTCTTTACTGACAAACAAAGTCTTGACGAATATGTCCT
CTCTTTTTTCAGCATTCACTGGAGCAATGGGCCAAATGGTTGGAGTCGGT
GGTTGCCATGGTATTGGAACCTCACCAGGGACAAGAGTCGTACCCAAAAG
CCGCTCGTAACTTCTTATTAAACTGGTCTTTCTATTCTTCAATGATCATT
CGCGATTTGACGCTACGTTCGGCGGCGTCTTTCGGTTCGTTCCATTTGAT
TCGTTTGTTGTATGATGAATACATGTTTTATTTGATCGAACACAAAGTGG
CCGCCCATACTGGCAAGTCGCCTATGTCCGTCATGGCAGAGTGTGTCGGt
ggaatgacgtcatcaagtaaCGGTAACCAAGGCAACGATGATGAGGACGA
ATTGGACGAAAATTCGAACGACGGTTTGTCGGCACTGACGAGTGGAGACG
TCTTGAAGACTGGTGCCAATCTCACGATGTCACAAATTAACGAAGGCATG
GAGCCAGTTGCTAAGAAACTAAAACCTGATCATTTGGGTTGAACTATTAc
tttatattttataattttatttttttggtaaaatttgaaacaattttaaa
aagatgtagAAGCATTGTACATattatatttagatttttttcctttgatg
acaatttttttttttggtttgttcTTTGTCATCAattattatcattatca
tttgtacaaaattttccttttatcTTGATCAATTTAGATTTGTTTAAAAT
GTTATTTGTGAAAattattgacaatttttttgaatagaAATTTTACGTCA
ATCATATTATTTGGGTAAAGACATTTTTCAGAATAAGACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029403XLOC_029403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046013-exon-scaffold_105-1491911889:631707..631781TCONS_00046013-exon-scaffold_105-1491911889:631707..631781Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:631707..631781TCONS_00046013-exon-scaffold_105-1510915933:631707..631781Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:631707..631781TCONS_00046013-exon-scaffold_105-1575043694:631707..631781Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1491911889:632901..633177TCONS_00046013-exon-scaffold_105-1491911889:632901..633177Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:632901..633177TCONS_00046013-exon-scaffold_105-1510915933:632901..633177Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:632901..633177TCONS_00046013-exon-scaffold_105-1575043694:632901..633177Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1491911889:643011..643192TCONS_00046013-exon-scaffold_105-1491911889:643011..643192Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:643011..643192TCONS_00046013-exon-scaffold_105-1510915933:643011..643192Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:643011..643192TCONS_00046013-exon-scaffold_105-1575043694:643011..643192Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1491911889:643396..643729TCONS_00046013-exon-scaffold_105-1491911889:643396..643729Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:643396..643729TCONS_00046013-exon-scaffold_105-1510915933:643396..643729Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:643396..643729TCONS_00046013-exon-scaffold_105-1575043694:643396..643729Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1491911889:643917..644270TCONS_00046013-exon-scaffold_105-1491911889:643917..644270Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:643917..644270TCONS_00046013-exon-scaffold_105-1510915933:643917..644270Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:643917..644270TCONS_00046013-exon-scaffold_105-1575043694:643917..644270Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1491911889:644543..644776TCONS_00046013-exon-scaffold_105-1491911889:644543..644776Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:644543..644776TCONS_00046013-exon-scaffold_105-1510915933:644543..644776Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:644543..644776TCONS_00046013-exon-scaffold_105-1575043694:644543..644776Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1491911889:644969..645750TCONS_00046013-exon-scaffold_105-1491911889:644969..645750Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1510915933:644969..645750TCONS_00046013-exon-scaffold_105-1510915933:644969..645750Clytia hemisphaericaexon
TCONS_00046013-exon-scaffold_105-1575043694:644969..645750TCONS_00046013-exon-scaffold_105-1575043694:644969..645750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:631707..645750 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.88008	3.03078	5.50444e-08	0	14.2904	17.8147	16.6051	25.0041	19.8186	30.4089	20.446	14.8118	45.9665	45.354	53.1028	63.9737	11.0903	27.6786	52.2752	57.6896	7.65361	5.84226	9.52088	6.3674	19.9692	23.1624	20.6335	22.3023	2.9403	3.28952
Blast
[Close]
BLAST of TCONS_00046013 vs. Swiss-Prot (Human)
Match: RFX3 (Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2)

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 300/604 (49.67%), Postives = 398/604 (65.89%), Query Frame = 2 
Query:   56 YGASGKRVSSFPYGAGGTGNESMYSQQSNLHTYMDSHGNASQ-NQMFQSYSAQGGHPGSMGLGVSPQAIGVAQQAQYLQPGQAASQRVPISHTTRASPITV-------------------------QWLLENYETSDGVSLPRSTLYHHYLRHCAENKIDAVNAASFGKLIRSVFVGLKTRRLGTRGNSKYHYYGIRVKPNSPLARITDDT-HVALRATPTSSKRSMGSNNYDEERRTEGAASNAEDSS------------ALSAHQQYLGDVGDGLPEGPVIDLTEPLPEGLKKEDVITFGNYYRSHSEALLEVISTLQFDLVEALWQSFYK-SPAAANKADNGTLDNN----EFNITKNDLITFCNYKPVQVFIKETDYILYQKLVGVLVPDVLRAVPSALTQIVRNFAKSLENWLVGSMSEMPKEICNVKVAAVSAFSQTLRRYTSLNHLAQAARAVLQNSQQINQMWNDLNKVDFNNVQEQSSWVCQCDESLIAKLEQDFKQTLAQQHSLEQWAKWLESVVAMVLEPHQGQESYPKAARNFLLNWSFYSSMIIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKVAAHTGKSPMSVMAE 1735
            Y     R +++PY         MYSQ +    Y D+ G+++Q   +  S+S  G   G + +GV+   +  +    YL      +    ++HTTRASP T+                         QWLL+NYET++GVSLPRSTLY+HYLRHC E+K+D VNAASFGKLIRS+F+GL+TRRLGTRGNSKYHYYGIRVKP+SPL R+ +D  ++A+R  P   K+      Y   ++ +G A     S             A S H Q   D    LPE   ++++  LP+G   ED+ +  + YR H EA+L+V+  LQF L+E LWQ+F++ SP+        T  +N    E  + K  LIT C ++ +  ++   D+ +YQ LV +L+PDVLR +PSALTQ +RNFAKSLE WL  +M+ +P+ +   KVAAVSAF+QTLRRYTSLNHLAQAARAVLQN+ QINQM +DLN+VDF NVQEQ+SWVCQCD++++ +LE DFK TL QQ +LEQWA WL++V+   L+P++G+ S+PKAAR FLL WSFYSSM+IRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA  TG++P++VM E
Sbjct:   67 YTNGAIRTTTYPYT-----ETQMYSQNTG-GNYFDTQGSSAQVTTVVSSHSMVG--TGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQ-----RYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS-LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGE 656
The following BLAST results are available for this feature:
BLAST of TCONS_00046013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFX30.000e+049.67Transcription factor RFX3 OS=Homo sapiens GN=RFX3 ... [more]
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