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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046017 ID=TCONS_00046017|Name=TCONS_00046017|organism=Clytia hemisphaerica|type=transcript|length=1074bp
TTCAACTATCACCAGGAGAGAAGATAGAGGACACGTTTCCAGCCAGAAGT
TGCCACTTTACATtgtttttgatcagtttgatccaGATCGGCGAATCGTA
CAGCGTTATCAAAAGCAGCTATTATGCTGTCAAACACTTCCACAACATCA
GTGCTAAACCTGATCCCACCAATTCGACGCTCGCCGGCTATCTGTTGGAA
GCAGCACAGAGGTTATGTCATCGTCCGACGGTAAAGAAACAGCCAATTAA
GTCCGAGCACATCCACAAAATTTACGAAATCATCATCAAAGATGGTCTTT
CACTCCTAGATTTTCGCAACTTTACAATCATAATCCTTTCCTACACTGGA
TTTCTCAGGTATGATGAGGTATCGAATTTAATGCTTGGGGACATAATTTT
GTTTGACACCCACATGAAGATTTTCATTAAGCATTCAAAAACGGACCAGT
ACCGGGAGGGTGCCTGGGTCTATATCGCTAGCCTGGATTCTCCGGTTTGC
CCGGTGAAGACTCTTAAACGCTACCTGGAACTCGCTGGTATTTCATGTAT
TAATGAATTCTGGTTTCGTGCAATGACATTCTTCAAGAAAGCTAATGTCC
ATAAAATCAGAGCAAAGAACGTTGCTATCTGCTATTCAACTGCCAGATCT
GCCGTTATGGCATACCTGTCTAGGATAGGTTTGGATGAAAAACTATTTGG
CTTACACAGTTTGCGCAGAGGTGGAGCTACAACAGCTGCCAACCGAGGTG
TCAACGATAGAATCTTCCAAAGAAAAGCATGGCAGATGGAAAACGACTGG
GGTTAAGAATGGCTATGTCGATGAAGATTTAGATAGTCTTTTACAAGTTT
CACTAGGGCTTGGCCTGTGAAGACCTTTATTTGACCTCAACCGATCTGTG
ACGTTTTACAGAGGCTTTTCTAGACGACTTCTACTAAAGTATAAGTGGAT
AAGAAGAAGaagtaaaataataaataaagttattttcgaTTGAGTTTACG
AATTAGAAAATAacataattacgcatgaattaacatattttatgcacgga
tcgcgaatcgtgcatcgtaaatcg Run BLAST on NCBI protein sequence of TCONS_00046017-protein >TCONS_00046017-protein ID=TCONS_00046017-protein|Name=TCONS_00046017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
QLSPGEKIEDTFPARSCHFTLFLISLIQIGESYSVIKSSYYAVKHFHNIS
AKPDPTNSTLAGYLLEAAQRLCHRPTVKKQPIKSEHIHKIYEIIIKDGLS
LLDFRNFTIIILSYTGFLRYDEVSNLMLGDIILFDTHMKIFIKHSKTDQY
REGAWVYIASLDSPVCPVKTLKRYLELAGISCINEFWFRAMTFFKKANVH
KIRAKNVAICYSTARSAVMAYLSRIGLDEKLFGLHSLRRGGATTAANRGV
NDRIFQRKAWQMENDWG Run BLAST on NCBI transcript from alignment at scaffold_105:828017..829475+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046017 ID=TCONS_00046017|Name=TCONS_00046017|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at scaffold_105:828017..829475+ (Clytia hemisphaerica)
TTCAACTATCACCAGGAGAGAAGATAGAGGACACGTTTCCAGCCAGAAGT
TGCCACTTTACATtgtttttgatcagtttgatccaGATCGGCGAATCGTA
CAGCGTTATCAAAAGCAGCTATTATGCTGTCAAACACTTCCACAACATCA
GTGCTAAACCTGATCCCACCAATTCGACGCTCGCCGGCTATCTGTTGGAA
GCAGCACAGAGGTTATGTCATCGTCCGACGGTAAAGAAACAGCCAATTAA
GTCCGAGCACATCCACAAAATTTACGAAATCATCATCAAAGATGGTCTTT
CACTCCTAGATTTTCGCAACTTTACAATCATAATCCTTTCCTACACTGGA
TTTCTCAGGTATGATGAGGTATCGAATTTAATGCTTGGGGACATAATTTT
GTTTGACACCCACATGAAGATTTTCATTAAGCATTCAAAAACGGACCAGT
ACCGGGAGGGTGCCTGGGTCTATATCGCTAGCCTGGATTCTCCGGTTTGC
CCGGTGAAGACTCTTAAACGCTACCTGGAACTCGCTGGTATTTCATGTAT
TAATGAATTCTGGTTTCGTGCAATGACATTCTTCAAGAAAGCTAATGTCC
ATAAAATCAGAGCAAAGAACGTTGCTATCTGCTATTCAACTGCCAGATCT
GCCGTTATGGCATACCTGTCTAGGATAGGTTTGGATGAAAAACTATTTGG
CTTACACAGTTTGCGCAGAGGTGGAGCTACAACAGCTGCCAACCGAGGTG
TCAACGATAGAATCTTCCAAAGAAAAGCATGGCAGATGGAAAACGACTGG
GGTTAAGAATGGCTATGTCGATGAAGATTTAGATAGTCTTTTACAAGTTT
CACTAGGGCTTGGCCTGTGAAGACCTTTATTTGACCTCAACCGATCTGTG
ACGTTTTACAGAGGCTTTTCTAGACGACTTCTACTAAAGTATAACTGGAT
AAGAAGAAGaagtaaaataataaataaagaaattttcgattgagtttacg
aattagaaaataaatgaatttattttttgttcgtTCGGCGCTTCTTAGTC
ACGTGATACGATGTATAAGGGCGGTAGGATTTTGAGAATATTCACACGTC
GAAAGATGAGCTTAGACTCTCTCCCACCCACCCTTACATATTTCTATTTT
ACGGTTATTATAACATAGTGGTTGTTACTGATTATTTTACGGTTATTGTG
TACCGAGTACTACTTTGTACGATTTTTATAACATAGTCGTTGTTATTAAT
TATTTACTTACAAATGAGATTTGTAACTTATTATGCCGCACTATATAGGC
TTTTCTAGACGACTTCTACTAAAGTATAAGTGGATAAGAAGAAGaagtaa
aataataaataaagttattttcgaTTGAGTTTACGAATTAGAAAATAaca
taattacgcatgaattaacatattttatgcacggatcgcgaatcgtgcat
cgtaaatcg Coding sequence (CDS) from alignment at scaffold_105:828017..829475+ >TCONS_00046017 ID=TCONS_00046017|Name=TCONS_00046017|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_105:828017..829475+ (Clytia hemisphaerica)
CAACTATCACCAGGAGAGAAGATAGAGGACACGTTTCCAGCCAGAAGTTG
CCACTTTACATtgtttttgatcagtttgatccaGATCGGCGAATCGTACA
GCGTTATCAAAAGCAGCTATTATGCTGTCAAACACTTCCACAACATCAGT
GCTAAACCTGATCCCACCAATTCGACGCTCGCCGGCTATCTGTTGGAAGC
AGCACAGAGGTTATGTCATCGTCCGACGGTAAAGAAACAGCCAATTAAGT
CCGAGCACATCCACAAAATTTACGAAATCATCATCAAAGATGGTCTTTCA
CTCCTAGATTTTCGCAACTTTACAATCATAATCCTTTCCTACACTGGATT
TCTCAGGTATGATGAGGTATCGAATTTAATGCTTGGGGACATAATTTTGT
TTGACACCCACATGAAGATTTTCATTAAGCATTCAAAAACGGACCAGTAC
CGGGAGGGTGCCTGGGTCTATATCGCTAGCCTGGATTCTCCGGTTTGCCC
GGTGAAGACTCTTAAACGCTACCTGGAACTCGCTGGTATTTCATGTATTA
ATGAATTCTGGTTTCGTGCAATGACATTCTTCAAGAAAGCTAATGTCCAT
AAAATCAGAGCAAAGAACGTTGCTATCTGCTATTCAACTGCCAGATCTGC
CGTTATGGCATACCTGTCTAGGATAGGTTTGGATGAAAAACTATTTGGCT
TACACAGTTTGCGCAGAGGTGGAGCTACAACAGCTGCCAACCGAGGTGTC
AACGATAGAATCTTCCAAAGAAAAGCATGGCAGATGGAAAACGACTGGGG
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046017-exon-scaffold_105-1491911889:828017..828929 | TCONS_00046017-exon-scaffold_105-1491911889:828017..828929 | Clytia hemisphaerica | exon |
| TCONS_00046017-exon-scaffold_105-1510915933:828017..828929 | TCONS_00046017-exon-scaffold_105-1510915933:828017..828929 | Clytia hemisphaerica | exon |
| TCONS_00046017-exon-scaffold_105-1575043694:828017..828929 | TCONS_00046017-exon-scaffold_105-1575043694:828017..828929 | Clytia hemisphaerica | exon |
| TCONS_00046017-exon-scaffold_105-1491911889:829315..829475 | TCONS_00046017-exon-scaffold_105-1491911889:829315..829475 | Clytia hemisphaerica | exon |
| TCONS_00046017-exon-scaffold_105-1510915933:829315..829475 | TCONS_00046017-exon-scaffold_105-1510915933:829315..829475 | Clytia hemisphaerica | exon |
| TCONS_00046017-exon-scaffold_105-1575043694:829315..829475 | TCONS_00046017-exon-scaffold_105-1575043694:829315..829475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:828017..829475 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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