TCONS_00046033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046033
Unique NameTCONS_00046033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046033 ID=TCONS_00046033|Name=TCONS_00046033|organism=Clytia hemisphaerica|type=transcript|length=1707bp
GGATGGGACAGCTTATTATCAAATCAAATGGAAAACATCTTGGGAAAGAG
CTGATTCATTATCACAATTTGGTGAACTGCTGGACGAGTTTTGGGCCAAA
GTCAAGAAAGCCAGTACTGCTAATATGTTCAATAACACATCCGTCAACAG
GAAAGAGCCAGCGATCGTACCCAGGCCCAAACCCACAACTCAACAATCAA
ATAATACACAACAAAAGAACGCCCCACGAACGCCAACACAAAAGAAGAGG
ACACCTTCAACATCTCACACGCCACGCACacctcaacaacaacaacaaca
acaacaacaacaacaattctTCCAGCAGTCCCAACAGATTCAGCAAATGC
AATCCTTCCAACCACCGCCACAACAACCACCACCCGCCACACAAAGTATG
GGTCAACCGTCTTCTGTCACCCTCATCGACAGTGATGACGacgatgatga
cgtcatcgcaaTCAACCCTCCTCCATCGGGCGCCAATAACATGTCTTTCA
ACTCCATGaaTCTAAACAATATCAAGTTAGAAGACTTCGACCAGAAACCA
CAACTGGGTTTTCCACCTCAACCTTTCGCAGGAGGCCTCCCTCCACAACA
GCAATCTTTCATGAACCCCACCAACGGTCGAGGAGGTGGCGGTGGCAATA
GAGGACGTGGTAGTGGTGGTACAGGTGGAAGAGGAAGAGGTCGTGGTAGA
GGTTCCGGTCCCTCTCCTGCCAAGCGGAAGTTGGGTATGCCACCTGCTGG
AAGTGCTACTCCTCCTATGAAGATGGAACCGCAAATGGGCGGCTTTGGTG
gcgtgaaaaatgaaaatggtgGATTGGCGCCCGTTACAGCACAATCGAGT
TGGAAAGATCATTTTGAAGTATTGGAAAATTATGTGGATGGTCAAAAAGT
TCACTCTTCGTACAAATGTTTACACTGTAACGCCAAAATCGCGCAATCAT
CGAACTGTTCCCGCCACTTGAAAACACATTTGACGTCAGAGGAAGCAGAG
CACGAGTGTCCGATTTGTCAGAAGAAGTTCGCGCGGTTGGATTATATCGA
ACGTCATTTGAAACAGCACGGTAAAGGATCAACGGAGGAGGTCAAGAAAA
TGATCAAACTCGTCGCCGCCAGTATGAAGAAATAACATGTAACAACTACC
AAACTTGCTTAATTTTTTCATACACCAATTAATTCTGAAAccctacaatc
atggacaaaatatttgagacaaaggggatttccctgcgaaattttaaaca
ccacaaatgatttttttggtaaactacagttggaaagcaGAGTTTTAACA
CGAGACTTAAGACTAAGGAGGACCtcaggatctcaggatttaaaagttca
aatttgctccaaaaaggcttggaatatagcctagaagccaccgaacccct
caaaaatcgaaatattcaatgaaagaaagttgaagtgctaaaatagcaat
tctcgcccaaactttaaattcagaaaaacgtgaaaattcactaaaatctc
aatatatttcgacgaTGATTGTAGATTTTTTGATTGCCAGTTCTTCCCTA
TATTCATCAAGTTCAATTTATAGCTAGTTCTAGCATGGTCTTATTAGAAC
TTCACAGCTTCACAGGAATTAGCTCAAAATAAAACAGTGGATTATATTCT
CGACTTAATTTGACTAAATCTTTTCTTTGGATCAGTACGGTTATTAGAGT
AAGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_105:178038..181740-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046033 ID=TCONS_00046033|Name=TCONS_00046033|organism=Clytia hemisphaerica|type=transcript|length=3703bp|location=Sequence derived from alignment at scaffold_105:178038..181740- (Clytia hemisphaerica)
GGATGGGACAGCTTATTATCAAATCAAATGGAAAACATCTTGGGAAAGAG
CTGATTCATTATCACAATTTGGTGAACTGCTGGACGAGTTTTGGGCCAAA
GTCAAGAAAGCCAGTACTGCTAATATGTTCAATAACACATCCGTCAACAG
GGTAAGTTGTTTTATGTTTGAATTCGAAACATTTGATATATTTGATTTAG
TCCACAAGTTTGATTATAGTTTGACGTTTATTGCTGGCATGCCTGTATAA
CAAAGGTAAAATAAACCAATTATACTGAATTATAACAATATTTTGTTTTC
ATGAAATGCTCATTCGAAATAGTTTCATGAAAAGTGAAAAATCTTAAAAA
CGCCAAGTGATACAGAATTTCTTTTCTAACCAACTTTCATGTAAAGTGAA
TGATCTTAAAAAAAAAGCCAAGTAGCATTTTTTTTCTAACCAACTTTCTT
GTTTGCTTTCTTTAGAAAGAGCCAGCGATCGTACCCAGGCCCAAACCCAC
AACTCAACAATCAAATAATACACAACAAAAGAACGCCCCACGAACGCCAA
CACAAAAGAAGAGGACACCTTCAACATCTCACACGCCACGCACACCTCAA
CAACAACAACAACAACAACAACAACAACAATTCTTCCAGCAGTCCCAACA
GATTCAGGTACGGTAGTATTATGTAGATCATGCTACGATACGCACAGGGC
TTCAATCAACAAACAGATCAAATGAGAGCTTTAAACTTTCCGCCTATCCA
TAAATTATTTTGTGAACCCGTTTTTAATACAATACTCGGTGCTCTGTAAT
AAGTAGCAAGACTTCCTTCTGGTAGATAGCTATCTCATATTTAATAATGC
TATGACTCATAAGATATTTTCCTCTTTTTTTCCACACACCAGCAAATGCA
ATCCTTCCAACCACCGCCACAACAACCACCACCCGCCACACAAAGTATGG
GTCAACCGTCTTCTGTCACCCTCATCGACAGTGATGACGACGATGATGAC
GTCATCGCAATCAACCCTCCTCCATCGGGCGCCAATAACATGTCTTTCAA
CTCCATGGTAAGAAATATCTTTCATTCGTTGTACTCAAGCTTGAAAAACG
TCTGCTGATGATCGCACTTCAATTTATAAATACACCTGAATACACCGCAA
ACTTTGTTGAGAAGAAGGTAATCAGTGTTTTAGTTAAACTTATTGCGTCC
ACATTTTAGACACTTTTACCCTTTTTCTTTCTTTCAGAATCTAAACAATA
TCAAGTTAGAAGACTTCGACCAGAAACCACAACTGGGTTTTCCACCTCAA
CCTTTCGCAGGAGGCCTCCCTCCACAACAGCAATCTTTCATGAACCCCAC
CAACGGTCGAGGAGGTGGCGGTGGCAATAGAGGACGTGGTAGTGGTGGTA
CAGGTGGAAGAGGAAGAGGTCGTGGTAGAGGTTCCGGTCCCTCTCCTGCC
AAGCGGAAGTTGGGTATGCCACCTGCTGGAAGTGCTACTCCTCCTATGAA
GATGGAACCGGTGAGTAAAGCCTCTTTTCTTCTTTCATCATTTTAAGTTC
CCTTTTATAGTTAATAAACTAAATATAAGCTTGATGTTTCTTTGTTTTCG
AAAGAAGTTTTGTTTATGTTTTCGAGGCAAAATCGATTAGCATTTGAAAT
TTTAGTCCCTTTATGGCGCACTTGGACTTTCATTACAAAAAGCACCACCC
GTCACAAGCAACAAAACCGATTATCTTCTTCTCTCTGTTTCGTTGTAGGG
TGCGTCTCCCATCAAACACGAAAGTTCAAGTGCGTCATCGTCTTCAGTTT
CCGGCTCGTGGGAATCGAACTTTGAAATTATCGAGAAACGAAATTTTGAC
GGGTCCGTTAGTGAAACAAACTATCGGTGAGGTTGTGTGTTTTTACGAAA
CAGTGATTGGATGAAGGTGATGAAGAGTGATGTTAGAGGATGAAAAAAAA
TTTTGGATTTTTTTTTAATCGAAAAGAGCTGGTTGGTTAACTGTTTTAAA
AGAATTCCTGGAGGAAATCCAGTCTTTGTGTTGAGATATCTTCTACCTTT
ACACCTTCATTCAACCGCTGTTTATTTTGATTACAATTGTTTTGATATTA
CATTCCTTCTTTCCTTCGCGTGGCGGCTTTAGCAGCAAATGGGCGGCTTT
GGTGGCGTGAAAAATGAAAATGGTGGATTGGCGCCCGTTACAGCACAATC
GAGTTGGAAAGATCATTTTGAAGTATTGGAAAATTATGTGGATGGTCAAA
AAGTTCACTCTTCGTACAAGTGAGTGGATTTCTTCTTCTTCTTCTTCTTC
TTTACGTTTTACTTTTCGAAGTTCTTAGCATAGGAGCTAGGCATTGTTAT
TTTTTTGAGTTAGTTATTCATTTAAGTTATTCAATTACAGAGGCAATTGG
CTAGTCCAGTTTAGCCGCTCCCTTTTGAGTGCAGGCTAGTGACGAAGAAA
GTTATTATTTTATGTTATTATTTGTGTTTTCCTTTTTGTTTCTTTCTCGT
TTGTGAAGATGCCGACTGTGCGGAACATCCATCGCCCAGCAATCCAACTG
TGGCCGACATCTCAAACTGAAACACGGCGTCGGTGGTGGCGGCGTTGGTG
GTCTCTAAGCAAGAATGACCCCACAAACAGCCTTACCCTTCTCTTAAACT
CTCAATCTCTCTAAGAACTTTTCTTTTCGACAGACCATTCGAAAAAGACG
GACTCTCCGATTAAACAAAGCTTTCTCCTGCCCTTAATAAAATCAAGCTT
TTTAAATCTTTTAATTATACTGTGAAAAAATCTGATCGAAAGGTTTTACC
AAAGAAAAGTTCTTCCACCCTCCCCGTACCCCACAAGCACGCATATTCAA
CCGCCCTCCCGCCCTTCAAAAAGGCACCCATTCACGCCCATCTCCCTCTC
TTTCCGTTAAGATGTTTACACTGTAACGCCAAAATCGCGCAATCATCGAA
CTGTTCCCGCCACTTGAAAACACATTTGACGTCAGAGGAAGCAGAGCACG
AGTGTCCGATTTGTCAGAAGAAGTTCGCGCGGTTGGATTATATCGAACGT
CATTTGAAACAGCACGGTAAAGGATCAACGGAGGAGGTCAAGAAAATGAT
CAAACTCGTCGCCGCCAGTATGAAGAAATAACATGTAACAACTACCAAAC
TTGCTTAATTTTTTCATACACCAATTAATTCTGAAACCCTACAATCATGG
ACAAAATATTTGAGACAAAGGGGATTTCCCTGCGAAATTTTAAACACCAC
AAATGATTTTTTTGGTAAACTACAGTTGGAAAGCAGAGTTTTAACACGAG
ACTTAAGACTAAGGAGGACCTCAGGATCTCAGGATTTAAAAGTTCAAATT
TGCTCCAAAAAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCCTCAAA
AATCGAAATATTCAATGAAAGAAAGTTGAAGTGCTAAAATAGCAATTCTC
GCCCAAACTTTAAATTCAGAAAAACGTGAAAATTCACTAAAATCTCAATA
TATTTCGACGATGATTGTAGATTTTTTGATTGCCAGTTCTTCCCTATATT
CATCAAGTTCAATTTATAGCTAGTTCTAGCATGGTCTTATTAGAACTTCA
CAGCTTCACAGGAATTAGCTCAAAATAAAACAGTGGATTATATTCTCGAC
TTAATTTGACTAAATCTTTTCTTTGGATCAGTACGGTTATTAGAGTAAGA
GAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029412XLOC_029412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046033-exon-scaffold_105-1575043694:181590..181740TCONS_00046033-exon-scaffold_105-1575043694:181590..181740Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1575043694:181084..181275TCONS_00046033-exon-scaffold_105-1575043694:181084..181275Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1575043694:180684..180848TCONS_00046033-exon-scaffold_105-1575043694:180684..180848Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1575043694:180231..180503TCONS_00046033-exon-scaffold_105-1575043694:180231..180503Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1575043694:179472..179605TCONS_00046033-exon-scaffold_105-1575043694:179472..179605Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1575043694:178038..178829TCONS_00046033-exon-scaffold_105-1575043694:178038..178829Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1510915933:181590..181740TCONS_00046033-exon-scaffold_105-1510915933:181590..181740Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1510915933:181084..181275TCONS_00046033-exon-scaffold_105-1510915933:181084..181275Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1510915933:180684..180848TCONS_00046033-exon-scaffold_105-1510915933:180684..180848Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1510915933:180231..180503TCONS_00046033-exon-scaffold_105-1510915933:180231..180503Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1510915933:179472..179605TCONS_00046033-exon-scaffold_105-1510915933:179472..179605Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1510915933:178038..178829TCONS_00046033-exon-scaffold_105-1510915933:178038..178829Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1491911889:181590..181740TCONS_00046033-exon-scaffold_105-1491911889:181590..181740Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1491911889:181084..181275TCONS_00046033-exon-scaffold_105-1491911889:181084..181275Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1491911889:180684..180848TCONS_00046033-exon-scaffold_105-1491911889:180684..180848Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1491911889:180231..180503TCONS_00046033-exon-scaffold_105-1491911889:180231..180503Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1491911889:179472..179605TCONS_00046033-exon-scaffold_105-1491911889:179472..179605Clytia hemisphaericaexon
TCONS_00046033-exon-scaffold_105-1491911889:178038..178829TCONS_00046033-exon-scaffold_105-1491911889:178038..178829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:178038..181740 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277235	1.06906	0	1.26624	8.83054e-08	3.36833e-06	3.02664e-07	0.571215	0.110607	4.12048e-05	0.762591	0.299393	1.08632	0.012936	0.176641	0.546385	0.0346952	0.697923	0.187815	0.212581	0.229446	0.088517	0.105629	0.853494	0.0009643	0.012631	7.7582e-06	0	0.0674544	0.807996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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