TCONS_00046038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046038
Unique NameTCONS_00046038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2133

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046038 ID=TCONS_00046038|Name=TCONS_00046038|organism=Clytia hemisphaerica|type=transcript|length=2133bp
tttactttttctcattTGCAGGATGGGACAGCTTATTATCAAATCAAATG
GAAAACATCTTGGGAAAGAGCTGATTCATTATCACAATTTGGTGAACTGC
TGGACGAGTTTTGGGCCAAAGTCAAGAAAGCCAGTACTGCTAATATGTTC
AATAACACATCCGTCAACAGGAAAGAGCCAGCGATCGTACCCAGGCCCAA
ACCCACAACTCAACAATCAAATAATACACAACAAAAGAACGCCCCACGAA
CGCCAACACAAAAGAAGAGGACACCTTCAACATCTCACACGCCACGCACa
cctcaacaacaacaacaacaacaacaacaacaacaattctTCCAGCAGTC
CCAACAGATTCAGCAAATGCAATCCTTCCAACCACCGCCACAACAACCAC
CACCCGCCACACAAAGTATGGGTCAACCGTCTTCTGTCACCCTCATCGAC
AGTGATGACGacgatgatgacgtcatcgcaaTCAACCCTCCTCCATCGGG
CGCCAATAACATGTCTTTCAACTCCATGaaTCTAAACAATATCAAGTTAG
AAGACTTCGACCAGAAACCACAACTGGGTTTTCCACCTCAACCTTTCGCA
GGAGGCCTCCCTCCACAACAGCAATCTTTCATGAACCCCACCAACGGTCG
AGGAGGTGGCGGTGGCAATAGAGGACGTGGTAGTGGTGGTACAGGTGGAA
GAGGAAGAGGTCGTGGTAGAGGTTCCGGTCCCTCTCCTGCCAAGCGGAAG
TTGGGTATGCCACCTGCTGGAAGTGCTACTCCTCCTATGAAGATGGAACC
GCAGCAAATGGGCGGCTTTGGTGgcgtgaaaaatgaaaatggtgGATTGG
CGCCCGTTACAGCACAATCGAGTTGGAAAGATCATTTTGAAGTATTGGAA
AATTATGTGGATGGTCAAAAAGTTCACTCTTCGTACAAATGCCGACTGTG
CGGAACATCCATCGCCCAGCAATCCAACTGTGGCCGACATCTCAAACTGA
AACACGGCGTCGGTGGTGGCGGCGTTGGTGGTCTCTAAGCAAGAATGACC
CCACAAACAGCCTTACCCTTCTCTTAAACTCTCAATCTCTCTAAGAACTT
TTCTTTTCGACAGACCATTCGAAAAAGACGGACTCTCCGATTAAACAAAG
CTTTCTCCTGCCCTTAATAAAATCAagctttttaaatcttttaattATAC
TGTGAAAAAATCTGATCGAAAGGTTTTACCAAAGAAAAGTTCTTCCACCC
TCCCCGTACCCCACAAGCACGCATATTCAACCGCCCTCCCGCCCTTCAAA
AAGGCACCCATTCACGCCCATCTCCCTCTCTTTCCGTTAAGATGTTTACA
CTGTAACGCCAAAATCGCGCAATCATCGAACTGTTCCCGCCACTTGAAAA
CACATTTGACGTCAGAGGAAGCAGAGCACGAGTGTCCGATTTGTCAGAAG
AAGTTCGCGCGGTTGGATTATATCGAACGTCATTTGAAACAGCACGGTAA
AGGATCAACGGAGGAGGTCAAGAAAATGATCAAACTCGTCGCCGCCAGTA
TGAAGAAATAACATGTAACAACTACCAAACTTGCTTAATTTTTTCATACA
CCAATTAATTCTGAAAccctacaatcatggacaaaatatttgagacaaag
gggatttccctgcgaaattttaaacaccacaaatgatttttttggtaaac
tacagttggaaagcaGAGTTTTAACACGAGACTTAAGACTAAGGAGGACC
tcaggatctcaggatttaaaagttcaaatttgctccaaaaaggcttggaa
tatagcctagaagccaccgaacccctcaaaaatcgaaatattcaatgaaa
gaaagttgaagtgctaaaatagcaattctcgcccaaactttaaattcaga
aaaacgtgaaaattcactaaaatctcaatatatttcgacgaTGATTGTAG
ATTTTTTGATTGCCAGTTCTTCCCTATATTCATCAAGTTCAATTTATAGC
TAGTTCTAGCATGGTCTTATTAGAACTTCACAGCTTCACAGGAATTAGCT
CAAAATAAAACAGTGGATTATATTCTCGACTTAATTTGACTAAATCTTTT
CTTTGGATCAGTACGGTTATTAGAGTAAGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_105:178038..183386-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046038 ID=TCONS_00046038|Name=TCONS_00046038|organism=Clytia hemisphaerica|type=transcript|length=5349bp|location=Sequence derived from alignment at scaffold_105:178038..183386- (Clytia hemisphaerica)
TTTACTTTTTCTCATTTGCAGGATGGGACAGCTTATTATCAAATCAAATG
GAAAACATCTTGGGAAAGAGCTGATTCATTATCACAATTTGGTGAACTGC
TGGACGAGTTTTGGGCCAAAGTCAAGAAAGCCAGTACTGCTAATATGTTC
AATAACACATCCGTCAACAGGGTAAGTTGTTTTATGTTTGAATTCGAAAC
ATTTGATATATTTGATTTAGTCCACAAGTTTGATTATAGTTTGACGTTTA
TTGCTGGCATGCCTGTATAACAAAGGTAAAATAAACCAATTATACTGAAT
TATAACAATATTTTGTTTTCATGAAATGCTCATTCGAAATAGTTTCATGA
AAAGTGAAAAATCTTAAAAACGCCAAGTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNACCCTCTACGACAATGAATTTTGAAATTA
GCCGTAAATATTGGGTCTGTGCACTTACTAATGCCTCCTGCAACTCAACC
AAATAGAAACAGAAAAGAATTCTCGATCAAGTAAGTTACAGTTACTGTAA
TAAGGTTAGTTCTGACTTGAATGATTTTTACTTTTTCTCATTTGCAGGAT
GGGACAGCTTATTATCAAATCAAATGGAAAACATCTTGGGAAAGAGCTGA
TTCATTATCACAATTTGGTGAACTGCTGGACGAGTTTTGGGCCAAAGTCA
AGAAAGCCAGTACTGCTAATATGTTCAATAACACATCCGTCAACAGGGTA
AGTTGTTTTATGTTTGAATTCGAAACATTTGATATATTTGATTTAGTCCA
CAAGTTTGATTATAGTTTGACGTTTATTGCTGGCATGCCTGTATAACAAA
GGTAAAATAAACCAATTATACTGAATTATAACAATATTTTGTTTTCATGA
AATGCTCATTCGAAATAGTTTCATGAAAAGTGAAAAATCTTAAAAACGCC
AAGTGATACAGAATTTCTTTTCTAACCAACTTTCATGTAAAGTGAATGAT
CTTAAAAAAAAAGCCAAGTAGCATTTTTTTTCTAACCAACTTTCTTGTTT
GCTTTCTTTAGAAAGAGCCAGCGATCGTACCCAGGCCCAAACCCACAACT
CAACAATCAAATAATACACAACAAAAGAACGCCCCACGAACGCCAACACA
AAAGAAGAGGACACCTTCAACATCTCACACGCCACGCACACCTCAACAAC
AACAACAACAACAACAACAACAACAATTCTTCCAGCAGTCCCAACAGATT
CAGGTACGGTAGTATTATGTAGATCATGCTACGATACGCACAGGGCTTCA
ATCAACAAACAGATCAAATGAGAGCTTTAAACTTTCCGCCTATCCATAAA
TTATTTTGTGAACCCGTTTTTAATACAATACTCGGTGCTCTGTAATAAGT
AGCAAGACTTCCTTCTGGTAGATAGCTATCTCATATTTAATAATGCTATG
ACTCATAAGATATTTTCCTCTTTTTTTCCACACACCAGCAAATGCAATCC
TTCCAACCACCGCCACAACAACCACCACCCGCCACACAAAGTATGGGTCA
ACCGTCTTCTGTCACCCTCATCGACAGTGATGACGACGATGATGACGTCA
TCGCAATCAACCCTCCTCCATCGGGCGCCAATAACATGTCTTTCAACTCC
ATGGTAAGAAATATCTTTCATTCGTTGTACTCAAGCTTGAAAAACGTCTG
CTGATGATCGCACTTCAATTTATAAATACACCTGAATACACCGCAAACTT
TGTTGAGAAGAAGGTAATCAGTGTTTTAGTTAAACTTATTGCGTCCACAT
TTTAGACACTTTTACCCTTTTTCTTTCTTTCAGAATCTAAACAATATCAA
GTTAGAAGACTTCGACCAGAAACCACAACTGGGTTTTCCACCTCAACCTT
TCGCAGGAGGCCTCCCTCCACAACAGCAATCTTTCATGAACCCCACCAAC
GGTCGAGGAGGTGGCGGTGGCAATAGAGGACGTGGTAGTGGTGGTACAGG
TGGAAGAGGAAGAGGTCGTGGTAGAGGTTCCGGTCCCTCTCCTGCCAAGC
GGAAGTTGGGTATGCCACCTGCTGGAAGTGCTACTCCTCCTATGAAGATG
GAACCGGTGAGTAAAGCCTCTTTTCTTCTTTCATCATTTTAAGTTCCCTT
TTATAGTTAATAAACTAAATATAAGCTTGATGTTTCTTTGTTTTCGAAAG
AAGTTTTGTTTATGTTTTCGAGGCAAAATCGATTAGCATTTGAAATTTTA
GTCCCTTTATGGCGCACTTGGACTTTCATTACAAAAAGCACCACCCGTCA
CAAGCAACAAAACCGATTATCTTCTTCTCTCTGTTTCGTTGTAGGGTGCG
TCTCCCATCAAACACGAAAGTTCAAGTGCGTCATCGTCTTCAGTTTCCGG
CTCGTGGGAATCGAACTTTGAAATTATCGAGAAACGAAATTTTGACGGGT
CCGTTAGTGAAACAAACTATCGGTGAGGTTGTGTGTTTTTACGAAACAGT
GATTGGATGAAGGTGATGAAGAGTGATGTTAGAGGATGAAAAAAAATTTT
GGATTTTTTTTTAATCGAAAAGAGCTGGTTGGTTAACTGTTTTAAAAGAA
TTCCTGGAGGAAATCCAGTCTTTGTGTTGAGATATCTTCTACCTTTACAC
CTTCATTCAACCGCTGTTTATTTTGATTACAATTGTTTTGATATTACATT
CCTTCTTTCCTTCGCGTGGCGGCTTTAGCAGCAAATGGGCGGCTTTGGTG
GCGTGAAAAATGAAAATGGTGGATTGGCGCCCGTTACAGCACAATCGAGT
TGGAAAGATCATTTTGAAGTATTGGAAAATTATGTGGATGGTCAAAAAGT
TCACTCTTCGTACAAGTGAGTGGATTTCTTCTTCTTCTTCTTCTTCTTTA
CGTTTTACTTTTCGAAGTTCTTAGCATAGGAGCTAGGCATTGTTATTTTT
TTGAGTTAGTTATTCATTTAAGTTATTCAATTACAGAGGCAATTGGCTAG
TCCAGTTTAGCCGCTCCCTTTTGAGTGCAGGCTAGTGACGAAGAAAGTTA
TTATTTTATGTTATTATTTGTGTTTTCCTTTTTGTTTCTTTCTCGTTTGT
GAAGATGCCGACTGTGCGGAACATCCATCGCCCAGCAATCCAACTGTGGC
CGACATCTCAAACTGAAACACGGCGTCGGTGGTGGCGGCGTTGGTGGTCT
CTAAGCAAGAATGACCCCACAAACAGCCTTACCCTTCTCTTAAACTCTCA
ATCTCTCTAAGAACTTTTCTTTTCGACAGACCATTCGAAAAAGACGGACT
CTCCGATTAAACAAAGCTTTCTCCTGCCCTTAATAAAATCAAGCTTTTTA
AATCTTTTAATTATACTGTGAAAAAATCTGATCGAAAGGTTTTACCAAAG
AAAAGTTCTTCCACCCTCCCCGTACCCCACAAGCACGCATATTCAACCGC
CCTCCCGCCCTTCAAAAAGGCACCCATTCACGCCCATCTCCCTCTCTTTC
CGTTAAGATGTTTACACTGTAACGCCAAAATCGCGCAATCATCGAACTGT
TCCCGCCACTTGAAAACACATTTGACGTCAGAGGAAGCAGAGCACGAGTG
TCCGATTTGTCAGAAGAAGTTCGCGCGGTTGGATTATATCGAACGTCATT
TGAAACAGCACGGTAAAGGATCAACGGAGGAGGTCAAGAAAATGATCAAA
CTCGTCGCCGCCAGTATGAAGAAATAACATGTAACAACTACCAAACTTGC
TTAATTTTTTCATACACCAATTAATTCTGAAACCCTACAATCATGGACAA
AATATTTGAGACAAAGGGGATTTCCCTGCGAAATTTTAAACACCACAAAT
GATTTTTTTGGTAAACTACAGTTGGAAAGCAGAGTTTTAACACGAGACTT
AAGACTAAGGAGGACCTCAGGATCTCAGGATTTAAAAGTTCAAATTTGCT
CCAAAAAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCCTCAAAAATC
GAAATATTCAATGAAAGAAAGTTGAAGTGCTAAAATAGCAATTCTCGCCC
AAACTTTAAATTCAGAAAAACGTGAAAATTCACTAAAATCTCAATATATT
TCGACGATGATTGTAGATTTTTTGATTGCCAGTTCTTCCCTATATTCATC
AAGTTCAATTTATAGCTAGTTCTAGCATGGTCTTATTAGAACTTCACAGC
TTCACAGGAATTAGCTCAAAATAAAACAGTGGATTATATTCTCGACTTAA
TTTGACTAAATCTTTTCTTTGGATCAGTACGGTTATTAGAGTAAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029412XLOC_029412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046038-exon-scaffold_105-1575043694:183216..183386TCONS_00046038-exon-scaffold_105-1575043694:183216..183386Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1575043694:181084..181275TCONS_00046038-exon-scaffold_105-1575043694:181084..181275Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1575043694:180684..180848TCONS_00046038-exon-scaffold_105-1575043694:180684..180848Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1575043694:180231..180503TCONS_00046038-exon-scaffold_105-1575043694:180231..180503Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1575043694:179472..179608TCONS_00046038-exon-scaffold_105-1575043694:179472..179608Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1575043694:178038..179232TCONS_00046038-exon-scaffold_105-1575043694:178038..179232Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1510915933:183216..183386TCONS_00046038-exon-scaffold_105-1510915933:183216..183386Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1510915933:181084..181275TCONS_00046038-exon-scaffold_105-1510915933:181084..181275Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1510915933:180684..180848TCONS_00046038-exon-scaffold_105-1510915933:180684..180848Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1510915933:180231..180503TCONS_00046038-exon-scaffold_105-1510915933:180231..180503Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1510915933:179472..179608TCONS_00046038-exon-scaffold_105-1510915933:179472..179608Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1510915933:178038..179232TCONS_00046038-exon-scaffold_105-1510915933:178038..179232Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1491911889:183216..183386TCONS_00046038-exon-scaffold_105-1491911889:183216..183386Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1491911889:181084..181275TCONS_00046038-exon-scaffold_105-1491911889:181084..181275Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1491911889:180684..180848TCONS_00046038-exon-scaffold_105-1491911889:180684..180848Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1491911889:180231..180503TCONS_00046038-exon-scaffold_105-1491911889:180231..180503Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1491911889:179472..179608TCONS_00046038-exon-scaffold_105-1491911889:179472..179608Clytia hemisphaericaexon
TCONS_00046038-exon-scaffold_105-1491911889:178038..179232TCONS_00046038-exon-scaffold_105-1491911889:178038..179232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:178038..183386 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.28502	2.1334	5.71519	2.14305	6.6208	12.8521	8.07347	9.07567	1.75356	0.152482	2.10393e-05	1.85407	2.71431	0.00227037	0.023335	1.47259	1.6507	1.30565e-06	4.32119e-06	1.76993e-06	0.341953	0.0769357	0.247211	0.746285	0.00194405	2.2312	1.73844e-06	4.1453e-06	3.70004	0.397541
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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