TCONS_00046041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046041
Unique NameTCONS_00046041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046041 ID=TCONS_00046041|Name=TCONS_00046041|organism=Clytia hemisphaerica|type=transcript|length=2981bp
TATcatgggaaaaatcaaaatataatacccgcattctttttcacagTAAC
CTAAGATTTCTTATTGATAAAGGAAGTATAAATACTTACACCCTTCCCAA
ACTTCACCAATTTGTAAAACAATAAGAACAGTTTGAGTCGGTAAAGAAAG
AAGATAAGAGTCATCCTCAACTTCAGTTCCATCCTCTAAATATACTGAAT
CTACGTTCTCCAAATTTAACTTtaattttgctttgtttttgaggtCTTTG
AAGTTGGATGCTGTTAGACCAACACGCTTTTTCCCAAAACAATCTTGAAC
TTTGTATGGCTTATACTCGACCATACCTAACATTCGACGAATAAATTCCA
TAAACAATTAAGAAGAAAGAGGTTCTGAGTATTCTAATTGAGAAAATTCT
AATATAAAGTAAATAGAAGAATGAATTTGTACCAGAAACTCAAGAAAACA
CTAACAAAGACACAAAATAATGACACCCCTCTAGCTGTCTAGTATTCTGT
ATATCGGTGAATTTCCCGCTTGAAAATGAGACGCAAAAATGGCAGAGCTT
CTGGATATAGGTCGGTAGACAAGATTCTTAATGCACCCATATTGAaatgt
aaaatgtaaacaatccAAAAATTCAGACAAGTTTCAAACTTGCAAGTATG
AAGTACAGAAAGAAGATCATTTTGGCAAGATATTAACTTTTCTAAAGCTA
TTTAagaaattaatatttttgaaaggatCAGAAGGTTAGCAGTCCCTCGT
TGATTCGAATAACACAAACTGCAGCATTGAGTATGAACCATGAGAGCTCA
CAAACTACATCAACACCTGCTTCTTCTGCTTTCATTCCTACATTAACACA
GCCGCCCTCCACATCAAAACTTACTCCAAAAGacttaaaaagtaaaattt
tcacagaatcATTTCAAAAGGAAGTCAAAAACTTAATGAATGATGGTGAT
AATCTAACGAATCAGGAGGCAGACAAGAATAATGACAATGAAGATCGAAA
ACGAAGATTAAGCGCTAGCAACTCTGGAAAATCTGTCATTAATGAGGatg
gaaaaaagttgaaatttggaTTAGATAGGATGGAAAGGGTCGAGGACTCA
GATTCAGATTATGGTTTGAAAAGTTTATATGCTAGAGCTGAAAAATGGAA
AGTTGATAAAGGGAAGAAAAAGTTAAAGCATGATAAAGGAAGTAACAGTA
CCCAATCACCCAAACAGAAGAATACCAAGCCAAACTATTTCCTTGCTGTC
CGTTTGTACAACAAAGATATTCACGAAAAAGTCAACAAGGTTCAACACCA
CATACAAGAAAAGAACAGCAAAATTAAAGACTGTTTCATTCCTTTGCCAA
CCCTTCATCTGACACTTTTTGTCATGTCTctcaaaaatgaagatgaaaaa
cagACGGCTATTGACGCAATGTGTTTATCCGCCCCTCAACTGCAAAAATT
TGctcaaatgaaaattgaattagtaTATGAAAAACTAAGTACTTTTTCTG
GACAGGTGGTTTTTGTTGATTTGGTGCAAAACGATAGCTTGCTTGCTTTA
GGAGAAATTGTCAAGTTATTGAAGATTTCATTTGCTGAAATgaatttgag
tttcaaaaatgaaaactttacaCCACATTTGACAATCATGAAAATGAGtc
gatgttttcaaaaaatgaggAAAGCTGGTATCAGACGTATTGCTCCACAA
TTGTATGAAAAGCACAAGAGCGATTCTTTTGGTAGTGATGTAGTTAAGGA
CATTTTACTTTGTTCGATGACTGACAAAAAGAATGAGGATGGATTTTATA
AAGTTGTGGCCAGCATTGATCTTCAACAGGAAGCTAAATTGAACCTAGGA
ATGGAGGAAGAAACATTCAATGCACTGGATCTCACTTCGTATGAAGTCGT
TCCCAAGTGGGAAaatgaagttgaaaattttgagcCAGATTCGTCTTGga
atattttgaatgaaaatgacATTCATGaagcaaaaactaaaaataaaaac
gaagAGGGTGATACTAAGTAAACAATCTTAAATCGAACATCTTAGAACTT
GTCAAAGTTATTGTAACGAAGAGTAAaagttattaatttttgagtggTCG
GGTTTATATTGCTATTGGGTGTAATTTCAATATTGATTATAAATTCTGCT
TATATTGAGCCTATGACACAAGtcaattatttcttttctttattcTCGAG
AAGtcgcattttttgaaaattttatattttatttttgactcaCTGACAAG
AAGTCAATATAAAGTAGAatgatgatttattttttaagttcaaaaaatca
gatatttacaaaatagaacTAAAGAAAATTCACGTTGAATAACTTTGATA
TCTATTATCATAAGAGTTCATAAACGTGGAATGTTTTTCGAATGTTGATC
GAATCGAGTTGTCATCCGAATAATTCGAATAAATAGAATCGTACGAATTC
GTAGAATCGATACACTTTGAAGATGCGTCCattaaagattttgtcttttC
TTGTAACTGTCTTACAAGTTCTAAGTCCTCAGAATAAAATGTTTCGTCAG
TTTTTAGCACCTCCGAAGTTTGGTCGTGTCTAGGTATTGAATTGATTGGA
TCATACTTCAAGTTTCCAGTTCTGTTTTGGTCGCCTTCGTAATCAGATTT
TGAGCGCGTGGGCGTTTCAGTCATCCCGTTAGACGATGATAAGAAATTAG
AAGGGAAATTGAAGACGGGTGGAAAATTTGATGTTGGCGGGACAGATGGC
GGTGAAATATTGTTGTTGTTTAGGTTTTCGTATCGGTTTTGAAAATAAAC
AGGAGATGCGCTATTTGAAGTATCTGTGTAACCTGAAAGAGCGAGACAAT
CATGTATTTAaaacgagtctgctaaatcgcgtgccacgcgtgccagcgtg
ctatgcgtgccagcgtgcctacgtgccatgcgtgcctgcgtgccaacgtg
ccttggcgtgccaacgtgccagcgtgccaac
Run BLAST on NCBI

transcript from alignment at scaffold_105:218504..221785-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046041 ID=TCONS_00046041|Name=TCONS_00046041|organism=Clytia hemisphaerica|type=transcript|length=3282bp|location=Sequence derived from alignment at scaffold_105:218504..221785- (Clytia hemisphaerica)
TATCATGGGAAAAATCAAAATATAATACCCGCATTCTTTTTCACAGTAAC CTAAGATTTCTTATTGATAAAGGAAGTATAAATACTTACACCCTTCCCAA ACTTCACCAATTTGTAAAACAATAAGAACAGTTTGAGTCGGTAAAGAAAG AAGATAAGAGTCATCCTCAACTTCAGTTCCATCCTCTAAATATACTGAAT CTACGTTCTCCAAATTTAACTTTAATTTTGCTTTGTTTTTGAGGTCTTTG AAGTTGGATGCTGTTAGACCAACACGCTTTTTCCCAAAACAATCTTGAAC TTTGTATGGCTTATACTCGACCATACCTAACATTCGACGAATAAATTCCA TAAACAATTAAGAAGAAAGAGGTTCTGAGTATTCTAATTGAGAAAATTCT AATATAAAGTAAATAGAAGAATGAATTTGTACCAGAAACTCAAGAAAACA CTAACAAAGACACAAAATAATGACACCCCTCTAGCTGTCTAGTATTCTGT ATATCGGTGAATTTCCCGCTTGAAAATGAGACGCAAAAATGGCAGAGCTT CTGGATATAGGTCGGTAGACAAGATTCTTAATGCACCCATATTGAAATGT AAAATGTAAACAATCCAAAAATTCAGACAAGTTTCAAACTTGCAAGTATG AAGTACAGAAAGAAGATCATTTTGGCAAGATATTAACTTTTCTAAAGCTA TTTAAGAAATTAATATTTTTGAAAGGATCAGAAGGTAAGGACATGGACAT GCTAAAACCTATTTTTCTTAATAATGTGAATGCTAAATTATTTTCTCTAA AAATGAATCTTGCTGTCAGTTGTGGTGCTCTACAGTCTACACTCGTCTAC ACTCTTAGGAGGCATATGCCAGTTTGGTTTATTATTTATTTGCTATATTG GCGATATTGTTAAATTAAAAAGTTATTAAAGGTTCTACCTTTTGTCTTTT AGATTTACCAAACAGGAGAAGAAAGACATACATCAATTATATAATGTTAT CACAATTTTCTAAGAACATTCTCCATTATTCTCAGGTTAGCAGTCCCTCG TTGATTCGAATAACACAAACTGCAGCATTGAGTATGAACCATGAGAGCTC ACAAACTACATCAACACCTGCTTCTTCTGCTTTCATTCCTACATTAACAC AGCCGCCCTCCACATCAAAACTTACTCCAAAAGACTTAAAAAGTAAAATT TTCACAGAATCATTTCAAAAGGAAGTCAAAAACTTAATGAATGATGGTGA TAATCTAACGAATCAGGAGGCAGACAAGAATAATGACAATGAAGATCGAA AACGAAGATTAAGCGCTAGCAACTCTGGAAAATCTGTCATTAATGAGGAT GGAAAAAAGTTGAAATTTGGATTAGATAGGATGGAAAGGGTCGAGGACTC AGATTCAGATTATGGTTTGAAAAGTTTATATGCTAGAGCTGAAAAATGGA AAGTTGATAAAGGGAAGAAAAAGTTAAAGCATGATAAAGGAAGTAACAGT ACCCAATCACCCAAACAGAAGAATACCAAGCCAAACTATTTCCTTGCTGT CCGTTTGTACAACAAAGATATTCACGAAAAAGTCAACAAGGTTCAACACC ACATACAAGAAAAGAACAGCAAAATTAAAGACTGTTTCATTCCTTTGCCA ACCCTTCATCTGACACTTTTTGTCATGTCTCTCAAAAATGAAGATGAAAA ACAGACGGCTATTGACGCAATGTGTTTATCCGCCCCTCAACTGCAAAAAT TTGCTCAAATGAAAATTGAATTAGTATATGAAAAACTAAGTACTTTTTCT GGACAGGTGGTTTTTGTTGATTTGGTGCAAAACGATAGCTTGCTTGCTTT AGGAGAAATTGTCAAGTTATTGAAGATTTCATTTGCTGAAATGAATTTGA GTTTCAAAAATGAAAACTTTACACCACATTTGACAATCATGAAAATGAGT CGATGTTTTCAAAAAATGAGGAAAGCTGGTATCAGACGTATTGCTCCACA ATTGTATGAAAAGCACAAGAGCGATTCTTTTGGTAGTGATGTAGTTAAGG ACATTTTACTTTGTTCGATGACTGACAAAAAGAATGAGGATGGATTTTAT AAAGTTGTGGCCAGCATTGATCTTCAACAGGAAGCTAAATTGAACCTAGG AATGGAGGAAGAAACATTCAATGCACTGGATCTCACTTCGTATGAAGTCG TTCCCAAGTGGGAAAATGAAGTTGAAAATTTTGAGCCAGATTCGTCTTGG AATATTTTGAATGAAAATGACATTCATGAAGCAAAAACTAAAAATAAAAA CGAAGAGGGTGATACTAAGTAAACAATCTTAAATCGAACATCTTAGAACT TGTCAAAGTTATTGTAACGAAGAGTAAAAGTTATTAATTTTTGAGTGGTC GGGTTTATATTGCTATTGGGTGTAATTTCAATATTGATTATAAATTCTGC TTATATTGAGCCTATGACACAAGTCAATTATTTCTTTTCTTTATTCTCGA GAAGTCGCATTTTTTGAAAATTTTATATTTTATTTTTGACTCACTGACAA GAAGTCAATATAAAGTAGAATGATGATTTATTTTTTAAGTTCAAAAAATC AGATATTTACAAAATAGAACTAAAGAAAATTCACGTTGAATAACTTTGAT ATCTATTATCATAAGAGTTCATAAACGTGGAATGTTTTTCGAATGTTGAT CGAATCGAGTTGTCATCCGAATAATTCGAATAAATAGAATCGTACGAATT CGTAGAATCGATACACTTTGAAGATGCGTCCATTAAAGATTTTGTCTTTT CTTGTAACTGTCTTACAAGTTCTAAGTCCTCAGAATAAAATGTTTCGTCA GTTTTTAGCACCTCCGAAGTTTGGTCGTGTCTAGGTATTGAATTGATTGG ATCATACTTCAAGTTTCCAGTTCTGTTTTGGTCGCCTTCGTAATCAGATT TTGAGCGCGTGGGCGTTTCAGTCATCCCGTTAGACGATGATAAGAAATTA GAAGGGAAATTGAAGACGGGTGGAAAATTTGATGTTGGCGGGACAGATGG CGGTGAAATATTGTTGTTGTTTAGGTTTTCGTATCGGTTTTGAAAATAAA CAGGAGATGCGCTATTTGAAGTATCTGTGTAACCTGAAAGAGCGAGACAA TCATGTATTTAAAACGAGTCTGCTAAATCGCGTGCCACGCGTGCCAGCGT GCTATGCGTGCCAGCGTGCCTACGTGCCATGCGTGCCTGCGTGCCAACGT GCCTTGGCGTGCCAACGTGCCAGCGTGCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029413XLOC_029413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046041-exon-scaffold_105-1575043694:221052..221785TCONS_00046041-exon-scaffold_105-1575043694:221052..221785Clytia hemisphaericaexon
TCONS_00046041-exon-scaffold_105-1575043694:218504..220750TCONS_00046041-exon-scaffold_105-1575043694:218504..220750Clytia hemisphaericaexon
TCONS_00046041-exon-scaffold_105-1510915933:221052..221785TCONS_00046041-exon-scaffold_105-1510915933:221052..221785Clytia hemisphaericaexon
TCONS_00046041-exon-scaffold_105-1510915933:218504..220750TCONS_00046041-exon-scaffold_105-1510915933:218504..220750Clytia hemisphaericaexon
TCONS_00046041-exon-scaffold_105-1491911889:221052..221785TCONS_00046041-exon-scaffold_105-1491911889:221052..221785Clytia hemisphaericaexon
TCONS_00046041-exon-scaffold_105-1491911889:218504..220750TCONS_00046041-exon-scaffold_105-1491911889:218504..220750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:218504..221785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0658216 0.974992 1.61519 1.39974 10.8982 10.4981 6.20349 5.08585 1.87435 4.47449 0.00137019 1.85965 2.38906 0.444846 1.76264 3.9128 0.584614 2.43678 1.71948 1.87648 2.47054 1.8129 3.46331 1.8078 4.73336 4.99633 8.54841e-07 0.381888 1.31991 0.676787
Blast
BLAST of TCONS_00046041 vs. Swiss-Prot (Human)
Match: AKA7G (A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.721e-32
Identity = 72/199 (36.18%), Postives = 117/199 (58.79%), Query Frame = 3
Query: 1227 KPNYFLAVRLYNKDIHEKVNKVQHHIQEKNSKIKDCFIPLPTLHLTLFVMSLKNEDEKQTAIDAMCLSAPQLQKFAQMK-IELVYEKLSTFSGQVVFVDLVQNDSLLALGEIVKLLKISFAEMN-LSFKNENFTPHLTIMKMSRCFQKMRKAGIRRIAPQLYEKHKSDSFGSDVVKDILLCSMTDKKNEDGFYKVVASI 1817
            +PNYFL++ + NK+I + +  +Q+ I +++ ++    +   + H+TL VM L NEDE    IDA+    P +++  Q K + L ++ + TF  QV FV L + D + +L EI +    +F E   L  ++ +F PHLT MK+S+    +RK G+++I P LYEK  S  FG +++  I LCSM  KK  +G+Y   +SI
Sbjct:   84 QPNYFLSIPITNKEIIKGIKILQNAIIQQDERLAKAMVSDGSFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGNQVGFVKLAEGDHVNSLLEIAETANRTFQEKGILVGESRSFKPHLTFMKLSKS-PWLRKNGVKKIDPDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSI 281          
The following BLAST results are available for this feature:
BLAST of TCONS_00046041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AKA7G8.721e-3236.18A-kinase anchor protein 7 isoform gamma OS=Homo sa... [more]
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