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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046041 ID=TCONS_00046041|Name=TCONS_00046041|organism=Clytia hemisphaerica|type=transcript|length=2981bp TATcatgggaaaaatcaaaatataatacccgcattctttttcacagTAAC CTAAGATTTCTTATTGATAAAGGAAGTATAAATACTTACACCCTTCCCAA ACTTCACCAATTTGTAAAACAATAAGAACAGTTTGAGTCGGTAAAGAAAG AAGATAAGAGTCATCCTCAACTTCAGTTCCATCCTCTAAATATACTGAAT CTACGTTCTCCAAATTTAACTTtaattttgctttgtttttgaggtCTTTG AAGTTGGATGCTGTTAGACCAACACGCTTTTTCCCAAAACAATCTTGAAC TTTGTATGGCTTATACTCGACCATACCTAACATTCGACGAATAAATTCCA TAAACAATTAAGAAGAAAGAGGTTCTGAGTATTCTAATTGAGAAAATTCT AATATAAAGTAAATAGAAGAATGAATTTGTACCAGAAACTCAAGAAAACA CTAACAAAGACACAAAATAATGACACCCCTCTAGCTGTCTAGTATTCTGT ATATCGGTGAATTTCCCGCTTGAAAATGAGACGCAAAAATGGCAGAGCTT CTGGATATAGGTCGGTAGACAAGATTCTTAATGCACCCATATTGAaatgt aaaatgtaaacaatccAAAAATTCAGACAAGTTTCAAACTTGCAAGTATG AAGTACAGAAAGAAGATCATTTTGGCAAGATATTAACTTTTCTAAAGCTA TTTAagaaattaatatttttgaaaggatCAGAAGGTTAGCAGTCCCTCGT TGATTCGAATAACACAAACTGCAGCATTGAGTATGAACCATGAGAGCTCA CAAACTACATCAACACCTGCTTCTTCTGCTTTCATTCCTACATTAACACA GCCGCCCTCCACATCAAAACTTACTCCAAAAGacttaaaaagtaaaattt tcacagaatcATTTCAAAAGGAAGTCAAAAACTTAATGAATGATGGTGAT AATCTAACGAATCAGGAGGCAGACAAGAATAATGACAATGAAGATCGAAA ACGAAGATTAAGCGCTAGCAACTCTGGAAAATCTGTCATTAATGAGGatg gaaaaaagttgaaatttggaTTAGATAGGATGGAAAGGGTCGAGGACTCA GATTCAGATTATGGTTTGAAAAGTTTATATGCTAGAGCTGAAAAATGGAA AGTTGATAAAGGGAAGAAAAAGTTAAAGCATGATAAAGGAAGTAACAGTA CCCAATCACCCAAACAGAAGAATACCAAGCCAAACTATTTCCTTGCTGTC CGTTTGTACAACAAAGATATTCACGAAAAAGTCAACAAGGTTCAACACCA CATACAAGAAAAGAACAGCAAAATTAAAGACTGTTTCATTCCTTTGCCAA CCCTTCATCTGACACTTTTTGTCATGTCTctcaaaaatgaagatgaaaaa cagACGGCTATTGACGCAATGTGTTTATCCGCCCCTCAACTGCAAAAATT TGctcaaatgaaaattgaattagtaTATGAAAAACTAAGTACTTTTTCTG GACAGGTGGTTTTTGTTGATTTGGTGCAAAACGATAGCTTGCTTGCTTTA GGAGAAATTGTCAAGTTATTGAAGATTTCATTTGCTGAAATgaatttgag tttcaaaaatgaaaactttacaCCACATTTGACAATCATGAAAATGAGtc gatgttttcaaaaaatgaggAAAGCTGGTATCAGACGTATTGCTCCACAA TTGTATGAAAAGCACAAGAGCGATTCTTTTGGTAGTGATGTAGTTAAGGA CATTTTACTTTGTTCGATGACTGACAAAAAGAATGAGGATGGATTTTATA AAGTTGTGGCCAGCATTGATCTTCAACAGGAAGCTAAATTGAACCTAGGA ATGGAGGAAGAAACATTCAATGCACTGGATCTCACTTCGTATGAAGTCGT TCCCAAGTGGGAAaatgaagttgaaaattttgagcCAGATTCGTCTTGga atattttgaatgaaaatgacATTCATGaagcaaaaactaaaaataaaaac gaagAGGGTGATACTAAGTAAACAATCTTAAATCGAACATCTTAGAACTT GTCAAAGTTATTGTAACGAAGAGTAAaagttattaatttttgagtggTCG GGTTTATATTGCTATTGGGTGTAATTTCAATATTGATTATAAATTCTGCT TATATTGAGCCTATGACACAAGtcaattatttcttttctttattcTCGAG AAGtcgcattttttgaaaattttatattttatttttgactcaCTGACAAG AAGTCAATATAAAGTAGAatgatgatttattttttaagttcaaaaaatca gatatttacaaaatagaacTAAAGAAAATTCACGTTGAATAACTTTGATA TCTATTATCATAAGAGTTCATAAACGTGGAATGTTTTTCGAATGTTGATC GAATCGAGTTGTCATCCGAATAATTCGAATAAATAGAATCGTACGAATTC GTAGAATCGATACACTTTGAAGATGCGTCCattaaagattttgtcttttC TTGTAACTGTCTTACAAGTTCTAAGTCCTCAGAATAAAATGTTTCGTCAG TTTTTAGCACCTCCGAAGTTTGGTCGTGTCTAGGTATTGAATTGATTGGA TCATACTTCAAGTTTCCAGTTCTGTTTTGGTCGCCTTCGTAATCAGATTT TGAGCGCGTGGGCGTTTCAGTCATCCCGTTAGACGATGATAAGAAATTAG AAGGGAAATTGAAGACGGGTGGAAAATTTGATGTTGGCGGGACAGATGGC GGTGAAATATTGTTGTTGTTTAGGTTTTCGTATCGGTTTTGAAAATAAAC AGGAGATGCGCTATTTGAAGTATCTGTGTAACCTGAAAGAGCGAGACAAT CATGTATTTAaaacgagtctgctaaatcgcgtgccacgcgtgccagcgtg ctatgcgtgccagcgtgcctacgtgccatgcgtgcctgcgtgccaacgtg ccttggcgtgccaacgtgccagcgtgccaac Run BLAST on NCBI transcript from alignment at scaffold_105:218504..221785- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046041 ID=TCONS_00046041|Name=TCONS_00046041|organism=Clytia hemisphaerica|type=transcript|length=3282bp|location=Sequence derived from alignment at scaffold_105:218504..221785- (Clytia hemisphaerica) TATCATGGGAAAAATCAAAATATAATACCCGCATTCTTTTTCACAGTAAC
CTAAGATTTCTTATTGATAAAGGAAGTATAAATACTTACACCCTTCCCAA
ACTTCACCAATTTGTAAAACAATAAGAACAGTTTGAGTCGGTAAAGAAAG
AAGATAAGAGTCATCCTCAACTTCAGTTCCATCCTCTAAATATACTGAAT
CTACGTTCTCCAAATTTAACTTTAATTTTGCTTTGTTTTTGAGGTCTTTG
AAGTTGGATGCTGTTAGACCAACACGCTTTTTCCCAAAACAATCTTGAAC
TTTGTATGGCTTATACTCGACCATACCTAACATTCGACGAATAAATTCCA
TAAACAATTAAGAAGAAAGAGGTTCTGAGTATTCTAATTGAGAAAATTCT
AATATAAAGTAAATAGAAGAATGAATTTGTACCAGAAACTCAAGAAAACA
CTAACAAAGACACAAAATAATGACACCCCTCTAGCTGTCTAGTATTCTGT
ATATCGGTGAATTTCCCGCTTGAAAATGAGACGCAAAAATGGCAGAGCTT
CTGGATATAGGTCGGTAGACAAGATTCTTAATGCACCCATATTGAAATGT
AAAATGTAAACAATCCAAAAATTCAGACAAGTTTCAAACTTGCAAGTATG
AAGTACAGAAAGAAGATCATTTTGGCAAGATATTAACTTTTCTAAAGCTA
TTTAAGAAATTAATATTTTTGAAAGGATCAGAAGGTAAGGACATGGACAT
GCTAAAACCTATTTTTCTTAATAATGTGAATGCTAAATTATTTTCTCTAA
AAATGAATCTTGCTGTCAGTTGTGGTGCTCTACAGTCTACACTCGTCTAC
ACTCTTAGGAGGCATATGCCAGTTTGGTTTATTATTTATTTGCTATATTG
GCGATATTGTTAAATTAAAAAGTTATTAAAGGTTCTACCTTTTGTCTTTT
AGATTTACCAAACAGGAGAAGAAAGACATACATCAATTATATAATGTTAT
CACAATTTTCTAAGAACATTCTCCATTATTCTCAGGTTAGCAGTCCCTCG
TTGATTCGAATAACACAAACTGCAGCATTGAGTATGAACCATGAGAGCTC
ACAAACTACATCAACACCTGCTTCTTCTGCTTTCATTCCTACATTAACAC
AGCCGCCCTCCACATCAAAACTTACTCCAAAAGACTTAAAAAGTAAAATT
TTCACAGAATCATTTCAAAAGGAAGTCAAAAACTTAATGAATGATGGTGA
TAATCTAACGAATCAGGAGGCAGACAAGAATAATGACAATGAAGATCGAA
AACGAAGATTAAGCGCTAGCAACTCTGGAAAATCTGTCATTAATGAGGAT
GGAAAAAAGTTGAAATTTGGATTAGATAGGATGGAAAGGGTCGAGGACTC
AGATTCAGATTATGGTTTGAAAAGTTTATATGCTAGAGCTGAAAAATGGA
AAGTTGATAAAGGGAAGAAAAAGTTAAAGCATGATAAAGGAAGTAACAGT
ACCCAATCACCCAAACAGAAGAATACCAAGCCAAACTATTTCCTTGCTGT
CCGTTTGTACAACAAAGATATTCACGAAAAAGTCAACAAGGTTCAACACC
ACATACAAGAAAAGAACAGCAAAATTAAAGACTGTTTCATTCCTTTGCCA
ACCCTTCATCTGACACTTTTTGTCATGTCTCTCAAAAATGAAGATGAAAA
ACAGACGGCTATTGACGCAATGTGTTTATCCGCCCCTCAACTGCAAAAAT
TTGCTCAAATGAAAATTGAATTAGTATATGAAAAACTAAGTACTTTTTCT
GGACAGGTGGTTTTTGTTGATTTGGTGCAAAACGATAGCTTGCTTGCTTT
AGGAGAAATTGTCAAGTTATTGAAGATTTCATTTGCTGAAATGAATTTGA
GTTTCAAAAATGAAAACTTTACACCACATTTGACAATCATGAAAATGAGT
CGATGTTTTCAAAAAATGAGGAAAGCTGGTATCAGACGTATTGCTCCACA
ATTGTATGAAAAGCACAAGAGCGATTCTTTTGGTAGTGATGTAGTTAAGG
ACATTTTACTTTGTTCGATGACTGACAAAAAGAATGAGGATGGATTTTAT
AAAGTTGTGGCCAGCATTGATCTTCAACAGGAAGCTAAATTGAACCTAGG
AATGGAGGAAGAAACATTCAATGCACTGGATCTCACTTCGTATGAAGTCG
TTCCCAAGTGGGAAAATGAAGTTGAAAATTTTGAGCCAGATTCGTCTTGG
AATATTTTGAATGAAAATGACATTCATGAAGCAAAAACTAAAAATAAAAA
CGAAGAGGGTGATACTAAGTAAACAATCTTAAATCGAACATCTTAGAACT
TGTCAAAGTTATTGTAACGAAGAGTAAAAGTTATTAATTTTTGAGTGGTC
GGGTTTATATTGCTATTGGGTGTAATTTCAATATTGATTATAAATTCTGC
TTATATTGAGCCTATGACACAAGTCAATTATTTCTTTTCTTTATTCTCGA
GAAGTCGCATTTTTTGAAAATTTTATATTTTATTTTTGACTCACTGACAA
GAAGTCAATATAAAGTAGAATGATGATTTATTTTTTAAGTTCAAAAAATC
AGATATTTACAAAATAGAACTAAAGAAAATTCACGTTGAATAACTTTGAT
ATCTATTATCATAAGAGTTCATAAACGTGGAATGTTTTTCGAATGTTGAT
CGAATCGAGTTGTCATCCGAATAATTCGAATAAATAGAATCGTACGAATT
CGTAGAATCGATACACTTTGAAGATGCGTCCATTAAAGATTTTGTCTTTT
CTTGTAACTGTCTTACAAGTTCTAAGTCCTCAGAATAAAATGTTTCGTCA
GTTTTTAGCACCTCCGAAGTTTGGTCGTGTCTAGGTATTGAATTGATTGG
ATCATACTTCAAGTTTCCAGTTCTGTTTTGGTCGCCTTCGTAATCAGATT
TTGAGCGCGTGGGCGTTTCAGTCATCCCGTTAGACGATGATAAGAAATTA
GAAGGGAAATTGAAGACGGGTGGAAAATTTGATGTTGGCGGGACAGATGG
CGGTGAAATATTGTTGTTGTTTAGGTTTTCGTATCGGTTTTGAAAATAAA
CAGGAGATGCGCTATTTGAAGTATCTGTGTAACCTGAAAGAGCGAGACAA
TCATGTATTTAAAACGAGTCTGCTAAATCGCGTGCCACGCGTGCCAGCGT
GCTATGCGTGCCAGCGTGCCTACGTGCCATGCGTGCCTGCGTGCCAACGT
GCCTTGGCGTGCCAACGTGCCAGCGTGCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046041-exon-scaffold_105-1575043694:221052..221785 | TCONS_00046041-exon-scaffold_105-1575043694:221052..221785 | Clytia hemisphaerica | exon |
TCONS_00046041-exon-scaffold_105-1575043694:218504..220750 | TCONS_00046041-exon-scaffold_105-1575043694:218504..220750 | Clytia hemisphaerica | exon |
TCONS_00046041-exon-scaffold_105-1510915933:221052..221785 | TCONS_00046041-exon-scaffold_105-1510915933:221052..221785 | Clytia hemisphaerica | exon |
TCONS_00046041-exon-scaffold_105-1510915933:218504..220750 | TCONS_00046041-exon-scaffold_105-1510915933:218504..220750 | Clytia hemisphaerica | exon |
TCONS_00046041-exon-scaffold_105-1491911889:221052..221785 | TCONS_00046041-exon-scaffold_105-1491911889:221052..221785 | Clytia hemisphaerica | exon |
TCONS_00046041-exon-scaffold_105-1491911889:218504..220750 | TCONS_00046041-exon-scaffold_105-1491911889:218504..220750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_105 | supercontig | scaffold_105:218504..221785 - |
Blast
BLAST of TCONS_00046041 vs. Swiss-Prot (Human)
Match: AKA7G (A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 8.721e-32 Identity = 72/199 (36.18%), Postives = 117/199 (58.79%), Query Frame = 3
Query: 1227 KPNYFLAVRLYNKDIHEKVNKVQHHIQEKNSKIKDCFIPLPTLHLTLFVMSLKNEDEKQTAIDAMCLSAPQLQKFAQMK-IELVYEKLSTFSGQVVFVDLVQNDSLLALGEIVKLLKISFAEMN-LSFKNENFTPHLTIMKMSRCFQKMRKAGIRRIAPQLYEKHKSDSFGSDVVKDILLCSMTDKKNEDGFYKVVASI 1817
+PNYFL++ + NK+I + + +Q+ I +++ ++ + + H+TL VM L NEDE IDA+ P +++ Q K + L ++ + TF QV FV L + D + +L EI + +F E L ++ +F PHLT MK+S+ +RK G+++I P LYEK S FG +++ I LCSM KK +G+Y +SI
Sbjct: 84 QPNYFLSIPITNKEIIKGIKILQNAIIQQDERLAKAMVSDGSFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGNQVGFVKLAEGDHVNSLLEIAETANRTFQEKGILVGESRSFKPHLTFMKLSKS-PWLRKNGVKKIDPDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSI 281
The following BLAST results are available for this feature:
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