TCONS_00046069 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046069
Unique Name	TCONS_00046069
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1260

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_105:430954..439573-
coding sequence from alignment at scaffold_105:430954..439573-

transcript sequence

>TCONS_00046069 ID=TCONS_00046069|Name=TCONS_00046069|organism=Clytia hemisphaerica|type=transcript|length=1260bp
ATGATTGGAATGATGGGAACCAAGGGCTAGAGAAAACTGACAACATGAAG
AAGTCAGTAACATGTATAGCCCCTATCAACATTGCAGTCATCAAATATTG
GGGCAAATCTGATGAAAGTTTAAACATCCCATTGAACTCTTCTCTCAGTA
TAACTCTTGCTACTGAAGATTTATGCACAGAAACTCAAGTTTCTTTTGAT
GATAGCTTGGGATCAGATGAGCTTTGGTTGAATGGGAAACAAGAGGATAT
CACACTCAACAAAAGAATAATACGTGTTTTAAAAGAAGTTcgtaaaatct
tttttgaacaaaataacaATAAATCCTTTGAAAAAGATATCTCAAAACTA
CCAATCAAAATCAGTTCTGTCAACAATTTTCCAACAGCTGCAGGACTTGC
CTCCTCAGCTTCAGGTTATGCATGTCTTGCCAAATGTTTGGGAaagttat
ttgatttgagaatcAAACTCTCTTACCTTGCAAGACTTGGTTCAGGTAGT
GCTTCCAGAAGCATTGATGGCGGTTTTGTGAAATGGATGAAAGGAAACTG
CTTGAAAGGAACGGACAGTGTGGCCCACCAAATTGCTACAGAAAATCATT
GGGAAGACTTGAAATGTGTTATCTTAGTGGTAAGCAATAAACAAAAGTCA
GTGCCAAGCACCCAAGGAATGAGAAATAGCGTAGAAACAAGTGAACTTTT
GAAATTGAGAGTTCAAAACATTGTTGAACCAAGACTGGCTGCAATGGAGC
AAGCTATCAAagacaaaaactttgagaattTTGCAGCACTTACAATGAAA
GATAGTAATCAATTGCACGCAATATGTCAAGACACATACCCTCCTATTAC
TCCTCCCTATCTTAACGCAACTTCACACAAGATCATCAAACTTATCACAG
ATTACAATAAGAATGGAATAAAAGCTGCATATACCTTTGATGCTGGAGCA
AACGCTTTCCTTTTTACGTTGAAAGAAAGTTTACATGAGCTCCTTGCTAC
ATTATTCAAATATTTCCCAATGGAAGAGGGTTGTATAAATCTTTTGACTG
AAGAATTAAAGAAAATTGATGGTAAAAGTTGCAATTTAGATGAAATAACG
CCTTCCCATAATGCAATTGAAAGAATCATTTTAACCAAACCTGGCAAAGG
AGCTACAGTGATAATGTCGGAagatttttcttgaataaaCCTATAGTTtt
acattttagtttttttgctgcattgaatattttttatacataaaatttca
taaaaaaaaa

Run BLAST on NCBI

protein sequence of TCONS_00046069-protein

>TCONS_00046069-protein ID=TCONS_00046069-protein|Name=TCONS_00046069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
DWNDGNQGLEKTDNMKKSVTCIAPINIAVIKYWGKSDESLNIPLNSSLSI
TLATEDLCTETQVSFDDSLGSDELWLNGKQEDITLNKRIIRVLKEVRKIF
FEQNNNKSFEKDISKLPIKISSVNNFPTAAGLASSASGYACLAKCLGKLF
DLRIKLSYLARLGSGSASRSIDGGFVKWMKGNCLKGTDSVAHQIATENHW
EDLKCVILVVSNKQKSVPSTQGMRNSVETSELLKLRVQNIVEPRLAAMEQ
AIKDKNFENFAALTMKDSNQLHAICQDTYPPITPPYLNATSHKIIKLITD
YNKNGIKAAYTFDAGANAFLFTLKESLHELLATLFKYFPMEEGCINLLTE
ELKKIDGKSCNLDEITPSHNAIERIILTKPGKGATVIMSEDFS

Run BLAST on NCBI

transcript from alignment at scaffold_105:430954..439573-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046069 ID=TCONS_00046069|Name=TCONS_00046069|organism=Clytia hemisphaerica|type=transcript|length=8620bp|location=Sequence derived from alignment at scaffold_105:430954..439573- (Clytia hemisphaerica)
ATGATTGGAATGATGGGAACCAAGGTATTTTTTACGAACGGCCTATTCAG
CTTTCTTTTGCAGAAAAAATCAGCACATCATGTCTTCATGTTCCTTCAAA
ATTTGAAAATGAGTACCGTGAAAAAGGGTAACTTGCATCAGTGGAGGCTA
ACATGCATATACCCCAATTCACAGACTTGTCTGGTCATGGTTTTCTCACC
TTGTAATATGAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAA
AACATGTAATTAATTGAGGAAAGATAATTATAATTACCATGAATTGCGTT
TCCCAAATGACCTCACTTTTACACGCTTCATAATCTGACATCTTTGTTAT
TTAGAATTTTCAAAAGAATAAGTCGCGATTACGTCATTAGACTAAAATAT
GATTGGCTGATAGATGTGAGCCTGGTTTCCCCATCCACTCGGTAAAATAT
TCACCACCCTTCAGCCACCCTTGAGAGACAGGGGCAGCAAAAAAAAGTAA
GTACGCAACCTTATGGAAACCACCCCATTTTGACATTTTTTTTAAACAAG
TGGCGTAAACAGGGGAGAGTGTGCAGAGGAGAGCAGGCAAAAGACATTTA
CAATCACGCTCTTCGAAGCTTGTGACATGTTGTCGTGGGAAAAGAAAAGT
GATTCTGATCAAAGGTACGTTTTTCTATTGTCAAGTAATTTTGTCATAAT
GTTTCCATGTCAACACTTTGAAGAGAAGTAATACTGCTCTAGTTGGTCTG
TTAATTGGGGTATATGCATGTTAGCCTCCACTGATGCAAGTTACCCTTTT
TCACGGTACTCGCGGGTGAGTTTTTTCAAACTTCTTGCTCGCGGCACGGG
GGTTCTAAAATCCAAAGCGCTAGCCACCCGAAACAGCTATCGACCTGGAA
TTTTTTGCATCGTCCCCGCAATAGTTTAGCTTTTGAGACGTATATACCAT
GTAATTGTTGGTTGGAGCAATGTATATTTTTCAGGAAGTCAAATTATTTA
CTTAAAATGCGTTTTTTTCATTGAAAAAATCAAATTTTATTATCGAACGT
GAATTTTTTAGAAAGAACAATGTTTTTTCTTTCCAAATGTGAAAAAAGTA
AGGATCACACTGTTTCCGGTGGCAAGCGCTAAGGGAAAGATTACGGTGTA
ATCACCCCCGTTTCTGACTCGATTCAGCTACATCTACGGAAAATAAAAGT
CGCACCAAACCTCCCGCGCGGAATTTTTCATAAAACACTTTTGCTTTTGG
TGCACCGTAATGATGGTACAAAATGGCTGGCGATGCGTGCACGAAAATGC
TTGAAAAATTGAACTTCAAAATGGAATATCTTTGGAACTTTAAAGAATTG
GAAGGTAAATGACCCCTCATTTTTCTTCTGATGGTTATGGCTTTCCATTA
AACTTGGTTTGGTATTCTGCAAGTAAGTTTGAAATTTCCGGCGTAAACTT
TATCTTAGGAACGGCGTATTGGCGTGAGCTCAATAATTTTAACCTTCCTT
GGCGTATCAAATCTGTGAATTTCGGCGTAGGAATCGATTTTGTCCAGTAT
ATCTTTTCGCCGCTCCGATTGTTTACACTGCCTTGTTCTTTTTAAAATAA
TAATGAGTGTTATTACTTAATTTTAAGTAAAACTTACTTAACCCTTTCCG
GACGCACGCGCCACTGGGTGGCCCATGAATCGTGTTCCTATATGACGCAC
GGGCCACTGGGTGGCCCATAGCTTTGTAAAAGATTTTAACAGTTTTCGCG
CCAAAATAGAATAACATGGTTTTGAATAATGATTTCGAGATAAATTTCCA
GTAACTTAACGCTTTTCGATATCTTGTTTACAACAAGAATAAAAACCCCT
ATTACATGTGAAAAAAATGAGGTATTACTTATCGTGATATCTTTTATCAA
TCACTTTCTATTGCAATTTTAGTGAAGCCAGTCAAAAATGGAATTTTTGT
CATATAACCGTGAAGTTATGCGTCCGGTAAGGGTTAAAATCGTCAAAAAC
ACTCAGAAATTATCCCAGAAATTGCAAGATGCGCGAAAATTAAAGGATGC
GCGAATGTTCTATTTTACGAGCTGCGCGAAAATTAAAGGCGCAAAAATTA
GAGGCGGGAAAATTAAGGCAATTAAGGTACATAACCCGATTGGAACGGCT
TCAAGAAAGTCATAATGGCAGATAATTTTTAAAATTTCTGATGAGGAAAT
GTGTGGAATTTGTGACTCCCCAAGCGATTTGAAGTACATAAAAGTCCGAT
CGGTAAAAAGACCGATCTTCTTTGGCCTCTACTCGACCGGTCTTTTTACC
TTTTGGGCCGCTCGGATATTGAAGAAGGCCAATGTGAGGCTGCTTATTAA
AAGCGGGCTCAGTGAAGCGGCCACATAGTAAGTTTTAAGCCGCTAACAGC
AGCCCTTAGCAGTCAATAGCAGACATTAGCGGCCCTTACCTTTGTTTTTC
AATTTACTTACATTTTCAAGCACATTTGGAGCAAAGAAAGATTTTTTCAG
AAATCAAAAAAGGCAAAACAAAAAAAAAAGATAAAAGGGAGGGCACTCTA
AATAAAGAAGAACCTAAGAAGCCATCAAATGTTGTAAAATAAAATAAAAT
GAATTGCTTCCCCAGTAGAAGAGAGGGAAAGCTTCCAAAAGGGCATCTCG
CAGGCTTTGCTTTCTTATGAGCTCCTGATTTGTCACAAGCTCCTGATCTG
TGACCTTTTGAATGTTTGATGCAACTTTTAGAATGCAAGAGAGAGAAAAA
GTGAAAATCACGTGAAAAGAAAGAGAACACACTCAGGAGGAGGGTATTTC
ATCACTATTTTTGGTAAAAGTTCACGTGATAACACGAAGGAAAGCACGCA
GAGGAAGCTCAATGTAAACAAACATTTAGTAAAAGTCTGCACTCTGCTTT
GTTCGTCGTGGGTCATGCTGGGCTTGCCTGAACCTCAAGATATTTGGTCT
CTCGAGACATTTTTCTTGCTTTCCAATTCTATATTATGATTTGAAAATAA
ATGTAAGAGAGCAAAGTATTTCGCTATTCAAAAATACTAGATAAACAAAT
TCAGAATCTGTAAGTAGTTATAAGGCAAAAACTTTTTTATTTATTGGTTT
ACGGGCCCGCTGATGTTATTTTTGCTTAAATGAAATAAAAATAAAATAGA
GATTTCAAAAACCTTTATTTATTTTTTCTCCTCCGACATGCAAAAAAGAG
GAAAGAAATAAAAAAACTTTACTTTAAACAGAAAAGAAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGTTTAACTGAAAACCATTGTTAAAATGAAAGTAGAGAACA
AATAATAAACCATTTCTGCTATTCTTTTTTAAAAGTCTCTTTCTTTTTCC
TATAAAATTGCTATTATAATGATTTTTCTTTGTACTGTTTTGAACAGATC
AGATTTTTTTTTCAAGACAAATTTTTAGTTTATTTTTAGTCATATATTTT
ATCTATAGACTTTATTAATCACTTTAGTACTTCTTTTGTCTTCATTTAAA
ATCGATAGGAAATTTCATAAAATTTTATTTTTTTATTTCCTCCGATTTCA
GATTCTAAAAAAGAAAATAAAAAAAAGTAAAAAGGTCAATTTTATTTTTA
TTTTTTTTCCATCCTCCTCTCCAAAATTTTACCTCAAAAAGCCTGTAAAC
CAGAAAATAAAAAAGTAAGTTGCCTAAGAACAATTTTCAAGATAACCCTG
TCTCACCACGAACGATCCTTTTGTTAATATCCCCGTCTCAGTCAGTGGAA
TTCTTTATTATTATTTTAGACAGTGTAAAATTCTTTATAGCCGAAATTCA
GAAAAAATTTCAACCGAATTCCACAAGCTTAAGCCGAATTCAATAATTAC
CTTTACCGAATTAGTTAAACTTTTTACCGAAGCGATTCGGTTAAACAGCC
GAATTTAATCGAAACCATTTTACCGAAATTCGGTCTTATTTTTGAGAAGA
TCCCTTAAGATATAAGCAAAAAAGGATTAATTAATGGAATACAAGGATTA
AATAATCTAATATGGGAGATTAAAATAGTCGAATCATTAATCGAACTTCA
TAAACGAAAATCAATTATATTTTTGAGAAGATCCCTAAAGAAGGCTGCTA
ATAGGCCACTGGCCACTGGCCGCCGATCAAGAAAAAGCCTCTAATAGAGG
CCTTGAGGTCGTTCTTGGAAAAATTCCATTCGTCGTTTAATGGCCGATCT
TCTAAAATGTTAGGCCGCTTGAAATTTCACTTAGCCCGCTATGAGACCGG
TGTTTTACCCGCTTTAGCCGATCGGACTTTAGTGTACTTCAAATCGCTTG
GGGAGTCACATTTATCAAATTTATCGATATTGATGGCTTGTTGATTCTTT
AAAGAAAAAAGATAACAGGTGTGGCTTTTTCTAATCCTGGAATATCAAAG
TTCCAGCTGCACTGTCTTATAACTTTAATTGTTGCAATCGTTGATTCTAA
GGGTTGACTTTTTTCTTATCTTTAGTTTTCAAATGAAAGCGGAAATTTGA
TGCAGGCGTTGGAAAGTAAGTATCATAGGTAAAAGATGGCTCAAGAAGAT
TTTTGCAAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAA
TCACTATTAATAAGCATACATCAATGTTCTTAGTCATATATAGTGATTTT
TTTTGTTATGAGATGGATATTTTTTTTTGCTCATGAGGGCTTAATTTTAA
AGAACATGTGTGTTTAGACATGAAATTTTGGTTGCTTGGCGCGTTTTTAC
TGAAAAACTGTCCAAATTCGACGTTTTTTTATAAGCACACTATCAATTAC
TTAGGTATTAGCTCTTTTCGAGATTGGCTCTTTCATTCTTTATGATTTTT
TGCACAAAGATGCATAACTATAAACCCTCGAATGTGACAGAGCTCGATTT
TTGAAGAAAAAAAAATTTGGGTAAATTTCAGCTAAAAAAACGGTTAAAAA
AAGGGTTTTTTGGATTTGTGAAATATTGGATCATTGTTTTTTTGCATGAA
AGTAGGTAAAAGATGGCTCAAGCAGATTTTTGTAAAAAAATAATTTTTCT
GCTCAAAAAAACGCATCTATTTATCTATAAGAATCATTTTGATGAGATAT
ATGGGTAAAGGCCACATTTTTGGTACGCCTGTCCCTTCCATTACATCAAA
AAATTTTCATGCCCAAAAAGCTTCAAAACGCATTCTTTTCTGACTCAACA
ATACCTATCGCATGAAAATAAACTTTGTGCCCCTCAAAATTTTAGATTGG
AAATCTTGTTCAGCCTCAATGTGTCATACACTCACATTTTTAACTTATTT
TACGGTAACTGAATCCATTACCATTTGAACTATTTCATTGAGGCTTAAAG
TAATAACTTCTTATTAAAAGTAGTGCATTTAGGGTTAGAAATCAGTTGGT
ATCATTCTTTAAACTGATTTCCATTCCTTTAACTTGGTATGCACCATTTT
GCATAATGGAAGGGACAAAATTTCATGCTTAAGTTCCACTTTTTGCCACA
TTTTGGTCTAAAATTGACCATAAAATAGCATCTTCTGCGTGAATTATCTT
GAGTTAGGTATTGAAATCAGCTATACCCGTTTAAAAGTCTTACATATAGT
TTTTTGAGAGCTTTCGAATGGTATACTTGATGTCTGAAATGTCTGAAAAT
GAGTTTGAAATTCTCAAAAAATTTCGCCCTTAGGGTTTTGCCTGGGGAAA
AAAGAAATGTCCCAAAAAAGGGATGTTCCACCAGTGGGATTTTAGGGGAT
TTTTTCCTGAGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGATTTTTTCCTGAGGCATAACCATCC
TATAGAGAAGGTCTGGAGAAAGTTTCAGCTAGATCTTATTTTTTTCCCGT
AAATTATGCTAAACGACCCCACTAAGATAAAACAAAAATAAATACAAACT
AAAACATGCAACAGCAAGCTAATTGCGCTTCGATTTGTTAGGCCTTTATT
ACATGGAAAAGTAAAAATAATTATGCACATGTAAATGAGTCAGTATTTAA
GGTCCAGTAGAATTTCTGGGAAACAGCCTATCTGGCAGTGTGCGGATCTA
GGGGGTGTCTTTTCCCCGTAGGTTTTTTTCTTGGGTATTTTATGTTCTTA
TGTATGTATGTTCTTCAAATTAGTATTTAAGGTTGGCTAAGGTCAAATTT
TTTCATCTATGGCTCAAATTTAGGTATTTTTATAGTTTTTGAAAATGTTA
ATTTCATCAGAAAGAGCCAGTTTACTTTTTCACAAATCTTTTTAGAAATT
TTGCGGGGCATTTTTTTGCTTGTGAGTCAGGTAAATGATCAAGTGTATTC
ACAACATTAATCTTTTGATACACATTTTGGCAGGACTCTAGTGCATAGTT
TGCAGAGGGGTATGAACTTAGGTTTATTTTATCCCCTATATAACCATCTT
CCCCGCACATACAGTTGGTCATTTACCTTGAGTACCCCCTTTCTGGATCT
TCAGGTGGGTCTATTCAGCATGTAGCTTGTTCTTTGGTAAAACATTGCTT
TTAAATCACTGGAAAATTGTGATGGAAATTTTGCTATATTGTTGTACAAT
AGACGATATCGGCTTAACGTGAAAACTCAGGTTTGACCTCCGAGAATTGC
CCACAATGCTTTGCGCGGAAGAAAGTTCAAGGTGAATTTTTTCCCGCACA
AAGCATTGTAGGGAATTCTTGGAGGTCAAATCCAAGTTTTCACGATAAGC
CAGTATCGTCTATTGAAAAGATATTTCCTTTTAGGGCTAGAGAAAACTGA
CAACATGAAGAAGTCAGTAACATGTATAGCCCCTATCAACATTGCAGTCA
TCAAATATTGGGGCAAATCTGATGAAAGTTTAAACATCCCATTGAACTCT
TCTCTCAGTATAACTCTTGCTACTGAAGATTTATGCACAGAAACTCAAGT
TTCTTTTGATGATAGCTTGGGATCAGATGAGCTTTGGTTGAATGGGAAAC
AAGAGGATATCACACTCAACAAAAGAATAATACGTGTTTTAAAAGAAGTT
CGTAAAATCTTTTTTGAACAAAATAACAATAAATCCTTTGAAAAAGATAT
CTCAAAACTACCAATCAAAATCAGTTCTGTCAACAATTTTCCAACAGCTG
CAGGACTTGCCTCCTCAGCTTCAGGTTATGCATGTCTTGCCAAATGTTTG
GGAAAGTTATTTGATTTGAGAATCAAACTCTCTTACCTTGCAAGACTTGG
TTCAGGTAGTGCTTCCAGAAGCATTGATGGCGGTTTTGTGAAATGGATGA
AAGGAAACTGCTTGAAAGGAACGGACAGTGTGGCCCACCAAATTGCTACA
GAAAATCATTGGGAAGACTTGAAATGTGTTATCTTAGTGGTAAGCAATAA
ACAAAAGTCAGTGCCAAGCACCCAAGGAATGAGAAATAGCGTAGAAACAA
GTGAACTTTTGAAATTGAGAGTTCAAAACATTGTTGAACCAAGACTGGCT
GCAATGGAGCAAGCTATCAAAGACAAAAACTTTGAGAATTTTGCAGCACT
TACAATGAAAGATAGTAATCAATTGCACGCAATATGTCAAGACACATACC
CTCCTATTACTCCTCCCTATCTTAACGCAACTTCACACAAGATCATCAAA
CTTATCACAGATTACAATAAGAATGGAATAAAAGCTGCATATACCTTTGA
TGCTGGAGCAAACGCTTTCCTTTTTACGTTGAAAGAAAGTTTACATGAGC
TCCTTGCTACATTATTCAAATATTTCCCAATGGAAGAGGGTTGTATAAAT
CTTTTGACTGAAGAATTAAAGAAAATTGATGGTAAAAGTTGCAATTTAGA
TGAAATAACGCCTTCCCATAATGCAATTGAAAGAATCATTTTAACCAAAC
CTGGCAAAGGAGCTACAGTGATAATGTCGGAAGATTTTTCTTGAATAAAC
CTATAGTTTTACATTTTAGTTTTTTTGCTGCATTGAATATTTTTTATACA
TAAAATTTCATAAAAAAAAA

Coding sequence (CDS) from alignment at scaffold_105:430954..439573-

>TCONS_00046069 ID=TCONS_00046069|Name=TCONS_00046069|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_105:430954..439573- (Clytia hemisphaerica)
GGCTAGAGAAAACTGACAACATGAAGAAGTCAGTAACATGTATAGCCCCT
ATCAACATTGCAGTCATCAAATATTGGGGCAAATCTGATGAAAGTTTAAA
CATCCCATTGAACTCTTCTCTCAGTATAACTCTTGCTACTGAAGATTTAT
GCACAGAAACTCAAGTTTCTTTTGATGATAGCTTGGGATCAGATGAGCTT
TGGTTGAATGGGAAACAAGAGGATATCACACTCAACAAAAGAATAATACG
TGTTTTAAAAGAAGTTCGTAAAATCTTTTTTGAACAAAATAACAATAAAT
CCTTTGAAAAAGATATCTCAAAACTACCAATCAAAATCAGTTCTGTCAAC
AATTTTCCAACAGCTGCAGGACTTGCCTCCTCAGCTTCAGGTTATGCATG
TCTTGCCAAATGTTTGGGAAAGTTATTTGATTTGAGAATCAAACTCTCTT
ACCTTGCAAGACTTGGTTCAGGTAGTGCTTCCAGAAGCATTGATGGCGGT
TTTGTGAAATGGATGAAAGGAAACTGCTTGAAAGGAACGGACAGTGTGGC
CCACCAAATTGCTACAGAAAATCATTGGGAAGACTTGAAATGTGTTATCT
TAGTGGTAAGCAATAAACAAAAGTCAGTGCCAAGCACCCAAGGAATGAGA
AATAGCGTAGAAACAAGTGAACTTTTGAAATTGAGAGTTCAAAACATTGT
TGAACCAAGACTGGCTGCAATGGAGCAAGCTATCAAAGACAAAAACTTTG
AGAATTTTGCAGCACTTACAATGAAAGATAGTAATCAATTGCACGCAATA
TGTCAAGACACATACCCTCCTATTACTCCTCCCTATCTTAACGCAACTTC
ACACAAGATCATCAAACTTATCACAGATTACAATAAGAATGGAATAAAAG
CTGCATATACCTTTGATGCTGGAGCAAACGCTTTCCTTTTTACGTTGAAA
GAAAGTTTACATGAGCTCCTTGCTACATTATTCAAATATTTCCCAATGGA
AGAGGGTTGTATAAATCTTTTGACTGAAGAATTAAAGAAAATTGATGGTA
AAAGTTGCAATTTAGATGAAATAACGCCTTCCCATAATGCAATTGAAAGA
ATCATTTTAACCAAACCTGGCAAAGGAGCTACAGTGATAATGTCGGAAGA
TTTTTCTTGAGATTGGAATGATGGGAACCAAGGGCTAGAGAAAACTGACA
ACATGAAGAAGTCAGTAACATGTATAGCCCCTATCAACATTGCAGTCATC
AAATATTGGGGCAAATCTGATGAAAGTTTAAACATCCCATTGAACTCTTC
TCTCAGTATAACTCTTGCTACTGAAGATTTATGCACAGAAACTCAAGTTT
CTTTTGATGATAGCTTGGGATCAGATGAGCTTTGGTTGAATGGGAAACAA
GAGGATATCACACTCAACAAAAGAATAATACGTGTTTTAAAAGAAGTTCG
TAAAATCTTTTTTGAACAAAATAACAATAAATCCTTTGAAAAAGATATCT
CAAAACTACCAATCAAAATCAGTTCTGTCAACAATTTTCCAACAGCTGCA
GGACTTGCCTCCTCAGCTTCAGGTTATGCATGTCTTGCCAAATGTTTGGG
AAAGTTATTTGATTTGAGAATCAAACTCTCTTACCTTGCAAGACTTGGTT
CAGGTAGTGCTTCCAGAAGCATTGATGGCGGTTTTGTGAAATGGATGAAA
GGAAACTGCTTGAAAGGAACGGACAGTGTGGCCCACCAAATTGCTACAGA
AAATCATTGGGAAGACTTGAAATGTGTTATCTTAGTGGTAAGCAATAAAC
AAAAGTCAGTGCCAAGCACCCAAGGAATGAGAAATAGCGTAGAAACAAGT
GAACTTTTGAAATTGAGAGTTCAAAACATTGTTGAACCAAGACTGGCTGC
AATGGAGCAAGCTATCAAAGACAAAAACTTTGAGAATTTTGCAGCACTTA
CAATGAAAGATAGTAATCAATTGCACGCAATATGTCAAGACACATACCCT
CCTATTACTCCTCCCTATCTTAACGCAACTTCACACAAGATCATCAAACT
TATCACAGATTACAATAAGAATGGAATAAAAGCTGCATATACCTTTGATG
CTGGAGCAAACGCTTTCCTTTTTACGTTGAAAGAAAGTTTACATGAGCTC
CTTGCTACATTATTCAAATATTTCCCAATGGAAGAGGGTTGTATAAATCT
TTTGACTGAAGAATTAAAGAAAATTGATGGTAAAAGTTGCAATTTAGATG
AAATAACGCCTTCCCATAATGCAATTGAAAGAATCATTTTAACCAAACCT
GGCAAAGGAGCTACAGTGATAATGTCGGAAGATTTTTCTTGAGATTGGAA
TGATGGGAACCAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029420	XLOC_029420	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046069-protein	TCONS_00046069-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046069-exon-scaffold_105-1575043694:439550..439573	TCONS_00046069-exon-scaffold_105-1575043694:439550..439573	Clytia hemisphaerica	exon
TCONS_00046069-exon-scaffold_105-1575043694:430954..432189	TCONS_00046069-exon-scaffold_105-1575043694:430954..432189	Clytia hemisphaerica	exon
TCONS_00046069-exon-scaffold_105-1510915933:439550..439573	TCONS_00046069-exon-scaffold_105-1510915933:439550..439573	Clytia hemisphaerica	exon
TCONS_00046069-exon-scaffold_105-1510915933:430954..432189	TCONS_00046069-exon-scaffold_105-1510915933:430954..432189	Clytia hemisphaerica	exon
TCONS_00046069-exon-scaffold_105-1491911889:439550..439573	TCONS_00046069-exon-scaffold_105-1491911889:439550..439573	Clytia hemisphaerica	exon
TCONS_00046069-exon-scaffold_105-1491911889:430954..432189	TCONS_00046069-exon-scaffold_105-1491911889:430954..432189	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_105	supercontig	scaffold_105:430954..439573 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.2797	43.2537	30.1942	30.5499	6.87384	4.96416	8.28919	8.73535	8.64749	6.20128	6.46371	8.56542	13.3579	17.3228	14.0692	15.2013	9.98421	13.1945	7.93027	5.48224	8.25726	6.97269	40.3297	33.8506	7.71966	9.60664	5.27665	7.16273	15.5487	19.3917

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013750	GHMP_kinase_C_dom
IPR006204	GHMP_kinase_N_dom
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR005935	Mev_decarb
IPR029765	Mev_diP_decarb
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0016831	carboxy-lyase activity
GO:0004163	diphosphomevalonate decarboxylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008299	isoprenoid biosynthetic process
GO:0019287	isopentenyl diphosphate biosynthetic process, mevalonate pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0005829	cytosol

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019287	isopentenyl diphosphate biosynthetic process, mevalonate pathway
biological_process	GO:0008299	isoprenoid biosynthetic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0004163	diphosphomevalonate decarboxylase activity

Blast

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BLAST of TCONS_00046069 vs. Swiss-Prot (Human)
Match: MVD1 (Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 5.248e-85
Identity = 171/377 (45.36%), Postives = 241/377 (63.93%), Query Frame = 3

Query:   54 SVTCIAPINIAVIKYWGKSDEXXXXXXXXXXXXXXATEDLCTETQVSFDDSLGSDELWLNGKQEDITLNKRIIRVLKEVRKIFFEQNNNKSFEKDISKLPIKI--SSVNNFPTXXXXXXXXXXXXXXXKCLGKLFDLRIKLSYLARLGSGSASRSIDGGFVKWMKGNCLKGTDSVAHQIATENHWEDLKCVILVVSNKQKSVPSTQGMRNSVETSELLKLRVQNIVEPRLAAMEQAIKDKNFENFAALTMKDSNQLHAICQDTYPPITPPYLNATSHKIIKLITDYNKN--GIKAAYTFDAGANAFLFTLKESLHELLATLFKYFPMEEGCINLLTEELKKIDGKSCNLD---EITPSHNAIERIILTKPGKGATVI 1163
            +VTC AP+NIAVIKYWGK DE L +P+NSSLS+TL  + L T T          D +WLNG++ED+    R+   L+E+R +  ++ N++  +   S L  K+  +SVNNFPTAAGLASSA+GYACLA  L +++ +   LS +AR GSGSA RS+ GGFV+W  G    G DS+A Q+A E+HW +L+ +ILVVS ++K   ST GMR SVETS LL+ R +++V  R+A M + I++++F +FA LTMKDSNQ HA C DT+PPI+  YLNA S +II L+  +N +    K AYTFDAG NA +FTL +++ E +A ++  FP        L     +    S  L     + P+   ++ II+T+ G G  ++
Sbjct:    9 AVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNGREEDVG-QPRLQACLREIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPTAAGLASSAAGYACLAYTLARVYGVESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPIS--YLNAISWRIIHLVHRFNAHHGDTKVAYTFDAGPNAVIFTLDDTVAEFVAAVWHGFPPGSNGDTFLKGLQVRPAPLSAELQAALAMEPTPGGVKYIIVTQVGPGPQIL 382

The following BLAST results are available for this feature:

BLAST of TCONS_00046069 vs. Swiss-Prot (Human)

BLAST of TCONS_00046069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MVD1	5.248e-85	45.36	Diphosphomevalonate decarboxylase OS=Homo sapiens ...	[more]

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TCONS_00046069 (transcript) - C. hemisphaerica