TCONS_00046071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046071
Unique NameTCONS_00046071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046071 ID=TCONS_00046071|Name=TCONS_00046071|organism=Clytia hemisphaerica|type=transcript|length=819bp
CAACCACggaaaaacaaaacacaaagttctaaacaaaatggcggcaacAA
GCCGGTCTAATGCTGAGCTTCAGAGAAAAGCTAAATTATTGGGAGGGAAA
ACCAAAGATCCCATCGAAAAACTTAGGCTTGCTTGCCTCTCAAGAGGAGC
TTCTGGTATAAAAGGTCTTGGAAGgaCTTTCAAAGTGTTTGATGATGATG
GTAGTCGATCTTTGGATTTCAATGAATTCAAGAAAGGTTTAAGAGATTAT
GGATTACATCTGGAACCACAGGAGGTAAAAGAATGCTTCACAGCTTTTGA
TAAAGATGGGAGTGGCAATCTTGATTTCGACGAATTTCTCATCGCTCTCA
GAcctCCAATGAGTAAATCTCGTAAGAACATCATCAATCAAGCTTTCAAC
AAACTAGATAAAACTGGCGATGGCTTCATCACAGCTGACGATCTGAAAGG
GACATATGATGTTAGACAGCACCCGAAATACAAGAGTGGAGAGTGGACAG
AGGAACAATGCTTTCGTAAATTTTTGGACAGTTTTGACAACCCTAATGAC
TCGGACGGATCTATAACATTGGAAGAATTTATCAATTATTATTCCGGAGT
GAGTGCATCCATAGACAATGATGCTTATTTCGATTTGATGATGAGGAATG
CTTACAAAATGTAatgaatgatgacgtcatctagAACGTGGTCAGACGGG
AAAAAATTTAGTTGAAAATTggtactttttggacctaccccggtggaggt
cctataaattaacctttgtccgttcgttcgttcgttcgttcgttcgttat
tagctttcctcatgattgN
Run BLAST on NCBI

protein sequence of TCONS_00046071-protein

>TCONS_00046071-protein ID=TCONS_00046071-protein|Name=TCONS_00046071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
NHGKTKHKVLNKMAATSRSNAELQRKAKLLGGKTKDPIEKLRLACLSRGA
SGIKGLGRTFKVFDDDGSRSLDFNEFKKGLRDYGLHLEPQEVKECFTAFD
KDGSGNLDFDEFLIALRPPMSKSRKNIINQAFNKLDKTGDGFITADDLKG
TYDVRQHPKYKSGEWTEEQCFRKFLDSFDNPNDSDGSITLEEFINYYSGV
SASIDNDAYFDLMMRNAYKM
Run BLAST on NCBI

transcript from alignment at scaffold_105:574733..582682-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046071 ID=TCONS_00046071|Name=TCONS_00046071|organism=Clytia hemisphaerica|type=transcript|length=7950bp|location=Sequence derived from alignment at scaffold_105:574733..582682- (Clytia hemisphaerica)
CAACCACGGAAAAACAAAACACAAAGTTCTAAACAAAATGGCGGCAACAA
GCCGGTCTAATGCTGAGCTTCAGAGAAAAGCTAAATTATTGGGAGGGAAA
ACCAAAGATCCCATCGAAAAACTTAGGCTTGCTTGCCTCTCAAGAGGAGC
TTCTGGTATAAAAGGTCTTGGAAGGTATGCTTCTTTTGAATTTTTCCTCT
AAAACTATTTCTATAGTCAGATAAAAGTGGTTTAAAAGTTTTAGCAATAA
ATGTTGTTTTTGTGTCATGTGTTTTTGTTCCCTCTTTCTGCAAACAGTCA
GAGAATTCCCTCAGTTTCGGTATATGCAATTGCTGTGGTTTACATTTGTG
TTTATAGCCTAAGGTGCTGGTTAACAAAGGTGAACAAACATTAATTGTCA
AAAATTGTATGTGCTTCTTCTAACAATTGAATTTGATCGCATTTGAATGC
ACCGGAAATGCCACTCTTTTTTGCTGTTTTTAATTCAATTGCCTTTGGAA
ATTCCTACATTTCTTCTCTCGCCTTGGAAGTTTTGAATTTTGGTGAGAAT
TTTTCCCCTCAGAAATTCTGTGTTATCCGTCTGCCTGTTACAACAGACAA
ATTCTATGGAATAGCCCATTTTTAATCTGTGCGTTAAAAGATATGATTAA
TTATGTACAGAAATTGACTGTGTTCTGTACCGTAAGTTGGTTTGATAATG
TCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAATTATAAACAATGAAACTACATGGGGACAAAACAGA
ATCGTGTTACAGGTTCTCCTTCTTAATCAGAACTATGTTATAGGTATGAG
TGATTTCGAACTTTTTTATGATTCGCACCATTTTATAGCTATCAAGATTA
TATCTGATTCTTGTTGTTGCTTAGCTGCCGTTCAGTCATGGTAACCAAAA
ATGACTTTTGTCACGCAAATGAAAGAGGTAGATTGTTATTCATCCAAATA
AAGTTATAAATGAAATAAAAGTAGTTGAACACTTACCTTGCCTGGATTGG
ATTAAACTGAAGTTCGAAATATGAGATCAAATGTGCAAAATTATAATAAC
ACTAAATTATAAAATTTTTGAGATATTTTCCTGTTTCTATGTTGACATCT
TCGGGAGTCATGGCGCAGATTGATTGCCATGGGAAATGTAAACATTCGAA
ACAGCGACTAAAAATAATTCGACAATCTATAAATAAACATTCGAATCATA
TACGTACGTACGTATTCGAACGTTCGATTAAAAGCGCGGGAAATTTAAAA
AGAACATTCCAAAAACATTTTCATTTTAGTTCCGGGTTGTGGTAGTGCGG
GTGACGAGGTGTCATTTAGGAGTGTTTTTTTTTTTAATAAATGATAGCGA
AAGGAAAAAGAAAGGAAAAGCACAAAATGCGCATTTTCAGACGAAATTTC
AACCTCTTGCTTGTTACCCAGGATGATTATAAACAAAGGGAAATCTCAGA
CCATCAACACGATCAGGACCACACTCACTACAAAATAATTGTCTATAAGA
AACGATGTATTCTCACGGTTAGATCAACCACGGAAAAACAAAACACAAAG
TTCTAAACAAAATGGCGGCAACAAGCCGGTCTAATGCTGAGCTTCAGAGA
AAAGCTAAATTATTGGGAGGGAAAACCAAAGATCCCATCGAAAAACTTAG
GCTTGCTTGCCTCTCAAGAGGAGCTTCTGGTATAAAAGGTCTTGGAAGGT
ATGCTTCTTTTGAATTTTTCCTCTAAAACTATTTCTATAGTCAGATAAAA
GTGGTTTAAAAGTTTTAGCAATAAATGTTGTTTTTGTGTCATGTGTTTTT
GTTCCCTCTTTCTGCAAACAGTCAGAGAATTCCCTCAGTTTCGGTATATG
CAATTGCTGTGGTTTACATTTGTGTTTATAGCCTAAGGTGCTGGTTAACA
AAGGTGAACAAACATTAATTGTCAAAAATTGTATGTGCTTCTTCTAACAA
TTGAATTTGATCGCATTTGAATGCACCGGAAATGCCACTCTTTTTTGCTG
TTTTTAATTCAATTGCCTTTGGAAATTCCTACATTTCTTCTCTCGCCTTG
GAAGTTTTGAATTTTGGTGAGAATTTTTCCCCTCAGAAATTCTGTGTTAT
CCGTCTGCCTGTTACAACAGACAAATTCTATGGAATAGCCCATTTTTAAT
CTGTGCGTTAAAAGATATGATTAATTATGTACAGAAATTGACTGTGTTCT
GTACCGTAAGTTGGTTTGATAATGTCAACAACGACCCTGCCGACGCACCG
GACTTAACGAACACCGGACACGCGAAAGTCCGGTGTAAAATGAGAATTTT
TTTTACCACCGGACAATCTCTACACCGGACTTAAGGAAATCGGATGTCCG
GTGTCGGAGAAGGCTATTTTTTCCCACCGGACAATCAAAACACACTGGAC
ATGACAAGTCCGGTGCGTCCGGTGTTTCTTAATTTTTTGTTTCATAAATG
TCCGGCGTCCAAAATTCCTTGCATGCAGCACCGGACTGACACCGGACTTA
TTGCGTCCGGTGTAGCGCAAGGATACTTTTTGCCACCGGACAAATACACC
GGACAGTCCGGTGCGTCGGCAGGGTCCTTGTCAACATCCCTCTTCTAATT
CTGACACCCTTCTTAAGAGATAGGAATAATAGGAAGGTTGGGATCACTTA
TAGACAAAAGATTTTTCTTCTCTGATTGCTAAGTAAAGAAAAATAGTTTT
CATCAGCGATTCCAACACTCTGATTACTCCTATCTTTAAAGAAGGGTGTC
AAAATTAGAAGGGGGATGTCGATATTAGACCAATTTACAATATGAATCTT
AAATTCTGTATCTTGCAAATACTGCGATCGCGGTGTTTGAAAAATGCAAA
GTGGTTTTTATACTAAATTGTAGTAAAAAATTCTACTGTAATTGAGGGAA
TTCCTTGACTGCAAAACTCCTGCAGCTTGGCAGCACTGTTGAATTTAAGA
AAAAAAACAGGAGAATAGTTTTTAGAAAAAAATTGAGAATAGACCTTTTC
CCCTTTCCTTCCGTCATATTGAATTGTATGCAAAAATTATGGTGGCCGAA
TTGTCGTGGTGAAAATCCCTTAGAAAGTATGCAAAACATATGCAAAAAGA
AAGTATTTTGAAAGTTGATGTGTGTACTCTGTCTTCGTGGAATTTTTTAA
TGGCATGAAAAGAGAATATGCTATGTCTTTAAGAACAAATTTCTAAAAGG
CTTTTGTTGTCCTGTAAATATTTCTTTTTGGATTAAGAAATTCCATCTTT
TACTGTTCTAATGATTATAATATTTCTTTATAACTATAAGATGCTTTGTT
TGCTTTTTAATCTTTGTGTAAACTTGCATATGTTTTGCATATTTTCCAAC
TCAATCCAACCACGGCTTTTTCGTTCCTGTATTTTTGCATACAATTCAAA
ATGGCGGATGGAAAGGCGAAAAGGTCTATACAGCAGATATTTATATATTA
AATAAAAACACTCAGTCAAGGAGTTCCCTCAATCTTAGTAGTTGATAAAA
CCTTACATGGATTAATTTCTTAGGGTCTTCTCAAAGTAGAAATTAGCGTT
CACTTGTTTTGTTCTTGATGGTTTTTCAATGGTTTCAACCAAATCGAAAG
CACAAGTTATCAAATGAAAAAGGGTTTTGTTGAAAACAAAATTCAACCTT
CAAATTTTGAATATTCTATTACTCTTTTCTACAAAATCAAGCGAACTTCC
ACTTGAAATATAGATGATTGATAATTGAAGATAAAAAGTGTGAACGGACT
TCTTGGTGTCTCTGCCTGACCTGGGTTTTATATAAAAGTAAAGAAAACAA
ACTTTGTAATTTGAAAAACAGACAGTCCCGGATCGACACAGAAAGCTATC
AAATCATGATGGTAATCTAGAAGCGCACTTTTTAAAAGCAAAACTATCTT
CTTTGGCTGGCTAGTTAAAGCTGTAGGTAAGGTGTTCGGAATTAGACAAG
TGAACGCTAGTTGCAAAATATTTTAAAATCCAAATTTAAGCTAAAACCCT
TAGGAAAATTAAAGAAATTTCACAATCTGTGAAAAAAAGTTCACACATAT
ATTAATCTTTTTAAAGTTTATATTCTAAGGTCTTGAATAAATATCATAAC
CAACTGATAATTTTCTCTCATATTGAATAAATATCTCCTCCGGCTTATTA
ATTTTCTAAAAATTTTCGTACCCCTTTTAAATTTACAGCTATCACAGGCT
GAATTGCTCTAAATTGCCTGGTTTTTGCTTATGACTACCTTTTTTTGGGT
TTTTTGTTGGTACAATTTCGGACCCCCCTCGGTTTATTAGATTTTAAAAA
AGAATTCAAATGTTTGGACCCCTACAATTTCTGAAAGTAATAGAACTCAA
GATACAAGAAGAGAAAAGGCAATTTTTGTATATACAAAACTATTCATATC
TTTTTTATGCTCAGATCAAAATATTCTTTCTAAGATCGGATTCTTTTAAT
AATTGAATGTTGGTTATCTTTTCTGACTGTTACCTTTTTCTGTAGGCTAA
ACATGAAAAACACTATTGCTATACGAGAGTATATCAAATTAAGGGAATTC
CTCGACCATTGCAGTATGTATATCAGGGCAATAAAAAAAAATTGATGTCA
ATGTAAAATNTAATAGAACTCAAGATACAAGAAGAGAAAAGGCAATTTTT
GTATATACAAAACTATTCATATCTTTTTTATGCTCAGATCAAAATATTCT
TTCTAAGATCGGATTCTTTTTATAATTGAATGTTGGTTATCTTTTCTGAC
TGTTACCTTTTTCTGTAGGCTAAACATGAAAAACACTATTGCTATACGAG
AGTATATCAAATTAAGGGAATTCCTCGACCATTGCAGTATGTATATCAGG
GCAATAAAAAAAAATTGATGTCAATGTAAAATTTGGACCTCACAAGAAAA
TGTAGTTTTAAAATGAATTTGAAATAAGATTTATTTTATTTTTCATTTAG
GACTTTCAAAGTGTTTGATGATGATGGTAGTCGATCTTTGGATTTCAATG
AATTCAAGAAAGGTTTAAGAGATTATGGATTACATCTGGAACCACAGGTA
TTAAAGAGTTATATATCCAGGAAACTTTTTCATTCCAGGTTAAAAAATTC
CTGACACAATAGACCTTTTGAAATTTCTACATTGCCCAGAATTGCCCGTC
GCTAAGAAAATTCATTGTGACGTCACTTTTTCATAGGAAAATGAACAATG
CGTTGACATCATTTCTTTTATTTTTTATTTCTGACGTCAGAAATTATAAC
AATTTTTTATCTCTTTTCGCTTGTTTTTTTTGCTTTATTTCGCTATTTTT
CCTGGATAAAGCGCTAAAAATCAATCAAAGATGTAGGAAACGGGTAACAA
ATACAATAATGACCGTTTTTTCGGGCTGTGCTGAAAATATTGCCCTCGGT
CGACGCAACAACGGTCGGGCAATATTTCTCAGTACAGACCTCACTAACCG
GTCATTATTGTATTACAGTTAACCTTTGTGTTGTTGGAATAATAAAATCA
AGTAGAATGAAATATTATTCGTTTTAGGAGGTAAAAGAATGCTTCACAGC
TTTTGATAAAGATGGGAGTGGCAATCTTGATTTCGACGAATTTCTCATCG
CTCTCAGAGTAAGTGTGGATTTCTGTAAACAATATAAGCTGATACCGTTT
GCTTACTCATCAATTTTAAATCACAAGCTTTTTCACATTGAATTGACACG
GATATGGAGCAATATTGGTTAGAGAAGAGAAAAGAAAAACAAAACTAAAT
CGAACACAATACAAAACATGTGTTTGATATGAAACGGGAAAACTTTTGTA
AAACAAAAGACTAAGTGTTCAAAATCTAAGTCTTTAAAATTTGAAAATTT
TAATAATTGGATTTTAGTCAGAACCTGCAGAGCCTGCTGTTTTTGTCATT
AAACCACTGCAACCAACAATTTTTAACTTTTTAAAATCAATTTGTTTTTA
TTTTAGCCTCCAATGAGTAAATCTCGTAAGAACATCATCAATCAAGCTTT
CAACAAACTAGATAAAACTGGCGATGGCTTCATCACAGCTGACGATCTGA
AAGGGTAAGCAAACAATCTAAATGGGAATTATGCCACTTCACAAAAAACT
TCCTACATCTTACTTATGATAGCGAGTGCATTCTCTCAGCTGATACAAAC
TCTATGGAAAAACTCCACGAGCAACATGGAATTGAAAATCAAGCCAACAA
TTTGTGAAGATTCTGCAGATTCTTATAAATAAGACCGTGGAGTGATTTGT
TTCAATCAAGACTTCCAAATTTCACGATAAAGCATTTCTATTACAGATCA
GATTGAGCTGAAACTATTAGGTTGACAGCTGTCCAAGGGGGCTAGGTCGC
AGGAAAGTTACAAACTTATCTAACCATTCCAGATTTTAATTTGAAAATTG
AAAAGGATGTCAAAAGTTTCTATAACCTGACAAGTCTCTTGTATAGGAAA
AGTTATGAACAGTTACTACAACATGAAGGTATAAAGAAAAACAGGAGTTG
AGTTTGTTGGTAATTGGTCGTTAAAGTCTTCTGATTTCTTTTATAAAAGA
TATCAAAAGCGATTCTAAGGCTCGCCCGATGAATTAAGACTTTTTAGTAG
AAGTCAAATCACTCTGAACATTCTAACTATCATTAGTGAAGATTACAACC
AAGGGTCTTTATGATAACATACATCTCCTGTTTTTCTTTATACCTCTAAG
ATTACAACCATTTTTCGTTACAGGACATATGATGTTAGACAGCACCCGAA
ATACAAGAGTGGAGAGTGGACAGAGGAACAATGCTTTCGTAAATTTTTGG
ACAGTTTTGACAACCCTAATGACTCGGACGGATCTGTAAGTTAAACAACC
TCTTTGTTTTTTATTGCAATCAAATCTCAGCATGTAGGGTGTCAAAGGAT
AATATGTTGAGCACTTGTCATTTTTAAATTAAAGGGTTGAAACCCAAAAT
ATTTTTTGTCCAAAGTTGGGATGTTTCGCTTTGGAATACTTAAATTTATG
CGTTCTTAAAAAGTTCTTACATGGTTCTTACATTAAAATTATAGTCTTAT
GATCTCCTTCTGAAAATCGAACACTTCCAGCTAGAAAATCTCGACATTGG
TCAAAAGAATTTTAGATATGGAGATAAAATGGAAGGATTAGAAGGATTCT
ACAGGCAAAATATCCCCCTTTTAAATATTCCATATTTTTTGGAATATTTA
AATAATTTTTGATGAAAAACATTTTCTTTCCATTTTTCTTTAGATAACAT
TGGAAGAATTTATCAATTATTATTCCGGAGTGAGTGCATCCATAGACAAT
GATGCTTATTTCGATTTGATGATGAGGAATGCTTACAAAATGTAATGAAT
GATGACGTCATCTAGAACGTGGTCAGACGGGAAAAAATTTAGTTGAAAAT
TGGTACTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTTTGT
CCGTTCGTTCGTTCGTTCGTTCGTTCGTTATTAGCTTTCCTCATGATTGN

Coding sequence (CDS) from alignment at scaffold_105:574733..582682-

>TCONS_00046071 ID=TCONS_00046071|Name=TCONS_00046071|organism=Clytia hemisphaerica|type=CDS|length=4641bp|location=Sequence derived from alignment at scaffold_105:574733..582682- (Clytia hemisphaerica)
ATAACATTGGAAGAATTTATCAATTATTATTCCGGAGTGAGTGCATCCAT
AGACAATGATGCTTATTTCGATTTGATGATGAGGAATGCTTACAAAATGT
AAGACATATGATGTTAGACAGCACCCGAAATACAAGAGTGGAGAGTGGAC
AGAGGAACAATGCTTTCGTAAATTTTTGGACAGTTTTGACAACCCTAATG
ACTCGGACGGATCTCCTCCAATGAGTAAATCTCGTAAGAACATCATCAAT
CAAGCTTTCAACAAACTAGATAAAACTGGCGATGGCTTCATCACAGCTGA
CGATCTGAAAGGGAGGTAAAAGAATGCTTCACAGCTTTTGATAAAGATGG
GAGTGGCAATCTTGATTTCGACGAATTTCTCATCGCTCTCAGAGACTTTC
AAAGTGTTTGATGATGATGGTAGTCGATCTTTGGATTTCAATGAATTCAA
GAAAGGTTTAAGAGATTATGGATTACATCTGGAACCACAGGCTTGCTTGC
CTCTCAAGAGGAGCTTCTGGTATAAAAGGTCTTGGAAGAACCACGGAAAA
ACAAAACACAAAGTTCTAAACAAAATGGCGGCAACAAGCCGGTCTAATGC
TGAGCTTCAGAGAAAAGCTAAATTATTGGGAGGGAAAACCAAAGATCCCA
TCGAAAAACTTAGATAACATTGGAAGAATTTATCAATTATTATTCCGGAG
TGAGTGCATCCATAGACAATGATGCTTATTTCGATTTGATGATGAGGAAT
GCTTACAAAATGTAAGACATATGATGTTAGACAGCACCCGAAATACAAGA
GTGGAGAGTGGACAGAGGAACAATGCTTTCGTAAATTTTTGGACAGTTTT
GACAACCCTAATGACTCGGACGGATCTCCTCCAATGAGTAAATCTCGTAA
GAACATCATCAATCAAGCTTTCAACAAACTAGATAAAACTGGCGATGGCT
TCATCACAGCTGACGATCTGAAAGGGAGGTAAAAGAATGCTTCACAGCTT
TTGATAAAGATGGGAGTGGCAATCTTGATTTCGACGAATTTCTCATCGCT
CTCAGAGACTTTCAAAGTGTTTGATGATGATGGTAGTCGATCTTTGGATT
TCAATGAATTCAAGAAAGGTTTAAGAGATTATGGATTACATCTGGAACCA
CAGGCTTGCTTGCCTCTCAAGAGGAGCTTCTGGTATAAAAGGTCTTGGAA
GAACCACGGAAAAACAAAACACAAAGTTCTAAACAAAATGGCGGCAACAA
GCCGGTCTAATGCTGAGCTTCAGAGAAAAGCTAAATTATTGGGAGGGAAA
ACCAAAGATCCCATCGAAAAACTTAGATAACATTGGAAGAATTTATCAAT
TATTATTCCGGAGTGAGTGCATCCATAGACAATGATGCTTATTTCGATTT
GATGATGAGGAATGCTTACAAAATGTAAGACATATGATGTTAGACAGCAC
CCGAAATACAAGAGTGGAGAGTGGACAGAGGAACAATGCTTTCGTAAATT
TTTGGACAGTTTTGACAACCCTAATGACTCGGACGGATCTCCTCCAATGA
GTAAATCTCGTAAGAACATCATCAATCAAGCTTTCAACAAACTAGATAAA
ACTGGCGATGGCTTCATCACAGCTGACGATCTGAAAGGGAGGTAAAAGAA
TGCTTCACAGCTTTTGATAAAGATGGGAGTGGCAATCTTGATTTCGACGA
ATTTCTCATCGCTCTCAGAGACTTTCAAAGTGTTTGATGATGATGGTAGT
CGATCTTTGGATTTCAATGAATTCAAGAAAGGTTTAAGAGATTATGGATT
ACATCTGGAACCACAGGCTTGCTTGCCTCTCAAGAGGAGCTTCTGGTATA
AAAGGTCTTGGAAGAACCACGGAAAAACAAAACACAAAGTTCTAAACAAA
ATGGCGGCAACAAGCCGGTCTAATGCTGAGCTTCAGAGAAAAGCTAAATT
ATTGGGAGGGAAAACCAAAGATCCCATCGAAAAACTTAGATAACATTGGA
AGAATTTATCAATTATTATTCCGGAGTGAGTGCATCCATAGACAATGATG
CTTATTTCGATTTGATGATGAGGAATGCTTACAAAATGTAAGACATATGA
TGTTAGACAGCACCCGAAATACAAGAGTGGAGAGTGGACAGAGGAACAAT
GCTTTCGTAAATTTTTGGACAGTTTTGACAACCCTAATGACTCGGACGGA
TCTCCTCCAATGAGTAAATCTCGTAAGAACATCATCAATCAAGCTTTCAA
CAAACTAGATAAAACTGGCGATGGCTTCATCACAGCTGACGATCTGAAAG
GGAGGTAAAAGAATGCTTCACAGCTTTTGATAAAGATGGGAGTGGCAATC
TTGATTTCGACGAATTTCTCATCGCTCTCAGAGACTTTCAAAGTGTTTGA
TGATGATGGTAGTCGATCTTTGGATTTCAATGAATTCAAGAAAGGTTTAA
GAGATTATGGATTACATCTGGAACCACAGGCTTGCTTGCCTCTCAAGAGG
AGCTTCTGGTATAAAAGGTCTTGGAAGAACCACGGAAAAACAAAACACAA
AGTTCTAAACAAAATGGCGGCAACAAGCCGGTCTAATGCTGAGCTTCAGA
GAAAAGCTAAATTATTGGGAGGGAAAACCAAAGATCCCATCGAAAAACTT
AGATAACATTGGAAGAATTTATCAATTATTATTCCGGAGTGAGTGCATCC
ATAGACAATGATGCTTATTTCGATTTGATGATGAGGAATGCTTACAAAAT
GTAAGACATATGATGTTAGACAGCACCCGAAATACAAGAGTGGAGAGTGG
ACAGAGGAACAATGCTTTCGTAAATTTTTGGACAGTTTTGACAACCCTAA
TGACTCGGACGGATCTCCTCCAATGAGTAAATCTCGTAAGAACATCATCA
ATCAAGCTTTCAACAAACTAGATAAAACTGGCGATGGCTTCATCACAGCT
GACGATCTGAAAGGGAGGTAAAAGAATGCTTCACAGCTTTTGATAAAGAT
GGGAGTGGCAATCTTGATTTCGACGAATTTCTCATCGCTCTCAGAGACTT
TCAAAGTGTTTGATGATGATGGTAGTCGATCTTTGGATTTCAATGAATTC
AAGAAAGGTTTAAGAGATTATGGATTACATCTGGAACCACAGGCTTGCTT
GCCTCTCAAGAGGAGCTTCTGGTATAAAAGGTCTTGGAAGAACCACGGAA
AAACAAAACACAAAGTTCTAAACAAAATGGCGGCAACAAGCCGGTCTAAT
GCTGAGCTTCAGAGAAAAGCTAAATTATTGGGAGGGAAAACCAAAGATCC
CATCGAAAAACTTAGATAACATTGGAAGAATTTATCAATTATTATTCCGG
AGTGAGTGCATCCATAGACAATGATGCTTATTTCGATTTGATGATGAGGA
ATGCTTACAAAATGTAAGACATATGATGTTAGACAGCACCCGAAATACAA
GAGTGGAGAGTGGACAGAGGAACAATGCTTTCGTAAATTTTTGGACAGTT
TTGACAACCCTAATGACTCGGACGGATCTCCTCCAATGAGTAAATCTCGT
AAGAACATCATCAATCAAGCTTTCAACAAACTAGATAAAACTGGCGATGG
CTTCATCACAGCTGACGATCTGAAAGGGAGGTAAAAGAATGCTTCACAGC
TTTTGATAAAGATGGGAGTGGCAATCTTGATTTCGACGAATTTCTCATCG
CTCTCAGAGACTTTCAAAGTGTTTGATGATGATGGTAGTCGATCTTTGGA
TTTCAATGAATTCAAGAAAGGTTTAAGAGATTATGGATTACATCTGGAAC
CACAGGCTTGCTTGCCTCTCAAGAGGAGCTTCTGGTATAAAAGGTCTTGG
AAGAACCACGGAAAAACAAAACACAAAGTTCTAAACAAAATGGCGGCAAC
AAGCCGGTCTAATGCTGAGCTTCAGAGAAAAGCTAAATTATTGGGAGGGA
AAACCAAAGATCCCATCGAAAAACTTAGATAACATTGGAAGAATTTATCA
ATTATTATTCCGGAGTGAGTGCATCCATAGACAATGATGCTTATTTCGAT
TTGATGATGAGGAATGCTTACAAAATGTAAGACATATGATGTTAGACAGC
ACCCGAAATACAAGAGTGGAGAGTGGACAGAGGAACAATGCTTTCGTAAA
TTTTTGGACAGTTTTGACAACCCTAATGACTCGGACGGATCTCCTCCAAT
GAGTAAATCTCGTAAGAACATCATCAATCAAGCTTTCAACAAACTAGATA
AAACTGGCGATGGCTTCATCACAGCTGACGATCTGAAAGGGAGGTAAAAG
AATGCTTCACAGCTTTTGATAAAGATGGGAGTGGCAATCTTGATTTCGAC
GAATTTCTCATCGCTCTCAGAGACTTTCAAAGTGTTTGATGATGATGGTA
GTCGATCTTTGGATTTCAATGAATTCAAGAAAGGTTTAAGAGATTATGGA
TTACATCTGGAACCACAGGCTTGCTTGCCTCTCAAGAGGAGCTTCTGGTA
TAAAAGGTCTTGGAAGAACCACGGAAAAACAAAACACAAAGTTCTAAACA
AAATGGCGGCAACAAGCCGGTCTAATGCTGAGCTTCAGAGAAAAGCTAAA
TTATTGGGAGGGAAAACCAAAGATCCCATCGAAAAACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029422XLOC_029422Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046071-proteinTCONS_00046071-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046071-exon-scaffold_105-1575043694:582557..582682TCONS_00046071-exon-scaffold_105-1575043694:582557..582682Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1575043694:580535..580582TCONS_00046071-exon-scaffold_105-1575043694:580535..580582Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1575043694:577186..577282TCONS_00046071-exon-scaffold_105-1575043694:577186..577282Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1575043694:576625..576705TCONS_00046071-exon-scaffold_105-1575043694:576625..576705Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1575043694:576179..576276TCONS_00046071-exon-scaffold_105-1575043694:576179..576276Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1575043694:575398..575509TCONS_00046071-exon-scaffold_105-1575043694:575398..575509Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1575043694:574733..574989TCONS_00046071-exon-scaffold_105-1575043694:574733..574989Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:582557..582682TCONS_00046071-exon-scaffold_105-1510915933:582557..582682Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:580535..580582TCONS_00046071-exon-scaffold_105-1510915933:580535..580582Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:577186..577282TCONS_00046071-exon-scaffold_105-1510915933:577186..577282Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:576625..576705TCONS_00046071-exon-scaffold_105-1510915933:576625..576705Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:576179..576276TCONS_00046071-exon-scaffold_105-1510915933:576179..576276Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:575398..575509TCONS_00046071-exon-scaffold_105-1510915933:575398..575509Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1510915933:574733..574989TCONS_00046071-exon-scaffold_105-1510915933:574733..574989Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:582557..582682TCONS_00046071-exon-scaffold_105-1491911889:582557..582682Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:580535..580582TCONS_00046071-exon-scaffold_105-1491911889:580535..580582Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:577186..577282TCONS_00046071-exon-scaffold_105-1491911889:577186..577282Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:576625..576705TCONS_00046071-exon-scaffold_105-1491911889:576625..576705Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:576179..576276TCONS_00046071-exon-scaffold_105-1491911889:576179..576276Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:575398..575509TCONS_00046071-exon-scaffold_105-1491911889:575398..575509Clytia hemisphaericaexon
TCONS_00046071-exon-scaffold_105-1491911889:574733..574989TCONS_00046071-exon-scaffold_105-1491911889:574733..574989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:574733..582682 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.5215	22.9409	83.5717	31.7374	0.000649201	3.86688e-09	14.3526	2.3966e-07	44.7763	65.3022	49.0932	33.6478	17.7539	0.292668	17.4156	19.0075	20.0467	27.5956	15.2432	26.6064	30.2077	36.0573	18.8316	13.1029	0	0.0473399	43.6326	26.6431	1.93281	11.6502
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00046071 vs. Swiss-Prot (Human)
Match: CAPSL (Calcyphosin-like protein OS=Homo sapiens GN=CAPSL PE=2 SV=4)

HSP 1 Score: 263.848 bits (673), Expect = 9.950e-88
Identity = 125/207 (60.39%), Postives = 162/207 (78.26%), Query Frame = 2 
Query:   38 MAATSRSNAELQRKAKLLGGKTKDPIEKLRLACLSRGASGIKGLGRTFKVFDDDGSRSLDFNEFKKGLRDYGLHLEPQEVKECFTAFDKDGSGNLDFDEFLIALRPPMSKSRKNIINQAFNKLDKTGDGFITADDLKGTYDVRQHPKYKSGEWTEEQCFRKFLDSFDNPNDSDGSITLEEFINYYSGVSASIDNDAYFDLMMRNAYK 658
            MA T+R + E+  +AK       DPIE+LRL CL+RG++GIKGLGR F++ DDD +R+LDF EF KGL DY + +E +EV+E F  FDKDG+G +DF+EFL+ LRPPMS++RK +I QAF KLDKTGDG IT +DL+  Y+ + HPKY++GEW+EEQ FRKFLD+FD+P D DG +T EEF+NYY+GVSASID D YF +MMR A+K
Sbjct:    1 MAGTARHDREMAIQAKKKLTTATDPIERLRLQCLARGSAGIKGLGRVFRIMDDDNNRTLDFKEFMKGLNDYAVVMEKEEVEELFRRFDKDGNGTIDFNEFLLTLRPPMSRARKEVIMQAFRKLDKTGDGVITIEDLREVYNAKHHPKYQNGEWSEEQVFRKFLDNFDSPYDKDGLVTPEEFMNYYAGVSASIDTDVYFIIMMRTAWK 207
The following BLAST results are available for this feature:
BLAST of TCONS_00046071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAPSL9.950e-8860.39Calcyphosin-like protein OS=Homo sapiens GN=CAPSL ... [more]
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