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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046073 ID=TCONS_00046073|Name=TCONS_00046073|organism=Clytia hemisphaerica|type=transcript|length=5471bpRun BLAST on NCBI transcript from alignment at scaffold_105:653660..676803- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046073 ID=TCONS_00046073|Name=TCONS_00046073|organism=Clytia hemisphaerica|type=transcript|length=23144bp|location=Sequence derived from alignment at scaffold_105:653660..676803- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046073 vs. Swiss-Prot (Human)
Match: AP1M1 (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3) HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0 Identity = 333/422 (78.91%), Postives = 385/422 (91.23%), Query Frame = 1
Query: 259 MSMSTVSILDLKGKSLISRNYRGDITSNSIEKFLPLVLEQEEESVPTPIVVWGDVTFVYIKYNNLYIVASTKINANVALIFTFLHRLVQVLIEYFKELEEESIRDNFVLIYELMDEIMDFGYPQTTETKILQEFITQQSHKLE-AAPRPPPAVTNAVSWRTEGLKYRKNEVFLDVIESXXXXXXXXXXXXRSEIVGSVKMKVYLTGMPELRLGLNDKVLFENTGRSKSKAVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRVEYMIKAKSQFKKRSTANNVEIIIPVPQDADSPKFKTTIGNVKYAPEKNAVVWNIKSFQGGKEYLMRAHFGLPSVESEETESRKPIAVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYTLRT 1521
MS S V +LDLKGK LI RNYRGD+ + +E F+P+++E+EEE + +PI+ G V F++IK+NNLY+VA++K NA V+L+F+FL+++VQV EYFKELEEESIRDNFV+IYEL+DE+MDFGYPQTT++KILQE+ITQ+ HKLE APRPP VTNAVSWR+EG+KYRKNEVFLDVIESVNLLV+ NGNVLRSEIVGS+KM+V+L+GMPELRLGLNDKVLF+NTGR KSK+VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSR+EYMIKAKSQFK+RSTANNVEI IPVP DADSPKFKTT+G+VK+ PE + +VW+IKSF GGKEYLMRAHFGLPSVE+E+ E + PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYITQNGDY LRT
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRT 422 The following BLAST results are available for this feature:
BLAST of TCONS_00046073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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