TCONS_00046077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046077
Unique NameTCONS_00046077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046077 ID=TCONS_00046077|Name=TCONS_00046077|organism=Clytia hemisphaerica|type=transcript|length=820bp
TTCAAGTGTTCGACTCACACGCAGGGGAGCTTCCCAAGTCTCTCTTCATT
TCATTCATCCTACCCTGTCTGAAAAAGATAGGTGAAGATGTCAAAGAGAA
GCTCGGTCCAAACCTCTCAGTACCCATGATTCTATTTGCCAAAGGAGCGC
ATTACGCATTCAACGAAATAAACGAGACAAACTATGACGTCATCGCACTC
GACTGGACAATGGATGTCGAAAAAGCAAGAGAATGCTTCCCGAACAAAAC
GTTGATGGGAAATCTGGACCCGTGCGCTCTTTATGCTGATAAGGAGAAAA
TTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGGAACTCGCCGATGG
ATCGCAAATCTCGGACACGGTATGTACCCGGACATGTCGCCTGACCATTT
GGAAGCTCTTGTAAATTCTGTTCACAAACATTCGCAAAAAGATCTGACGT
CATGACAAATTAAAAGAATGTCATGgttttatagaaattttataGTTTTG
GAGGTGATAGCGTGCCTTCACAGACCAAATATGAACGACGGCTGTTCCGG
ATACTGTACCACTGGGAAAATATCGTTGTGTTTGGTCACTCCGTTTAAGA
TGAAGCTGTATCGTTTAATTAAACTTTGTCGGTCTTTAGATATCTTTCTC
ATCCACCAAGATCTATTTACGCTAACTGaataaaggttgttttttcgttt
GAACCCATTTAGTAaatatttgaattatttttttagcaatcaatattttt
atttatatttgttAGGTTGAacgtttttttagaaataaaaaaaactcgaA
TCTGGAAATATTTTAACGGG
Run BLAST on NCBI

protein sequence of TCONS_00046077-protein

>TCONS_00046077-protein ID=TCONS_00046077-protein|Name=TCONS_00046077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
QVFDSHAGELPKSLFISFILPCLKKIGEDVKEKLGPNLSVPMILFAKGAH
YAFNEINETNYDVIALDWTMDVEKARECFPNKTLMGNLDPCALYADKEKI
DELAKDLVEKFGTRRWIANLGHGMYPDMSPDHLEALVNSVHKHSQKDLTS
Run BLAST on NCBI

transcript from alignment at scaffold_105:693540..695031-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046077 ID=TCONS_00046077|Name=TCONS_00046077|organism=Clytia hemisphaerica|type=transcript|length=1492bp|location=Sequence derived from alignment at scaffold_105:693540..695031- (Clytia hemisphaerica)
TTCAAGTGTTCGACTCACACGCAGGGGAGCTTCCCAAGTCTCTCTTCATT
TCATTCATCCTACCCTGTCTGAAAAAGATAGGTGAAGATGTCAAAGAGAA
GCTCGGTCCAAACCTCTCAGTACCCATGGTAACTCATGCTTTTAGCTTTA
GATAGTTTATCCTTGGATAATGCTCCTAATCTACAAACTTTGCCCTTCGT
TTCAAGTCTAAAAGAGATGTATAGCCTGTATATTGTTTATTTTTGATAAT
ATCTCTCTTTCAAAAGTTCAGAAGCTTCGTGTTATTATCGGATCCTAGTC
TAACATTCGTGGGTATCAATTCAAATCCATTGACCATTTCTCAATTCTTC
TTCAGATTCTATTTGCCAAAGGAGCGCATTACGCATTCAACGAAATAAAC
GAGACAAACTATGACGTCATCGCACTCGACTGGACAATGGATGTCGAAAA
AGCAAGGTTGGATTACGTCTTCTTAGGGGATAATGTTTACTGTTTGAACG
AAAATCCTGAGACTCAAATTATGTCTCTTAAAATGAGGACGCGTTGTATT
TTCTTTTGAGGACATACATTTGTGTTGATTGTTGAAGGGTAACAAATAAC
AAAATCCTTGTTTATCTTTTACTTTGTAGAGAATGCTTCCCGAACAAAAC
GTTGATGGGAAATCTGGACCCGTGCGCTCTTTATGCTGATAAGGTACGTT
CTATTTCTCTTGACGTTCTCTGACTTACAGTAACTTGGTTAGCTCTACTC
CAGGGGACATATTATCGACAGTTCAGTTTGATCTTTGTTTGAACCACTTT
GTTAGTGGAACTTCTTTTTCAAATTCTTTCGATTAGAAGCTCAGCTCTCT
CATTCCCAAAAGTTTATTCAAAATACGACATTCCATTGGTTCTTTTTACA
GGAGAAAATTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGGAACTC
GCCGATGGATCGCAAATCTCGGACACGGTATGTACCCGGACATGTCGCCT
GACCATTTGGAAGCTCTTGTAAATTCTGTTCACAAACATTCGCAAAAAGA
TCTGACGTCATGACAAATTAAAAGAATGTCATGGTTTTATAGAAATTTTA
TAGTTTTGGAGGTGATAGCGTGCCTTCACAGACCAAATATGAACGACGGC
TGTTCCGGATACTGTACCACTGGGAAAATATCGTTGTGTTTGGTCACTCC
GTTTAAGATGAAGCTGTATCGTTTAATTAAACTTTGTCGGTCTTTAGATA
CCTTTCTCATCCACCAAGATATAANAGCTGTATCGTTTAATTAAACTTTG
GCGGTCTTTACATATCTTTCTCATCCACCAAGATCTATTTACGCTAACTG
AATAAAGGTTGTTTTTTCGTTTGAACCCATTTAGTAAATATTTGAATTAT
TTTTTTAGCAATCAATATTTTTATTTATATTTGTTAGGTTGAACGTTTTT
TTAGAAATAAAAAAAACTCGAATCTGGAAATATTTTAACGGG

Coding sequence (CDS) from alignment at scaffold_105:693540..695031-

>TCONS_00046077 ID=TCONS_00046077|Name=TCONS_00046077|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_105:693540..695031- (Clytia hemisphaerica)
GAGAAAATTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGGAACTCG
CCGATGGATCGCAAATCTCGGACACGGTATGTACCCGGACATGTCGCCTG
ACCATTTGGAAGCTCTTGTAAATTCTGTTCACAAACATTCGCAAAAAGAT
CTGACGTCATGAAGAATGCTTCCCGAACAAAACGTTGATGGGAAATCTGG
ACCCGTGCGCTCTTTATGCTGATAAGATTCTATTTGCCAAAGGAGCGCAT
TACGCATTCAACGAAATAAACGAGACAAACTATGACGTCATCGCACTCGA
CTGGACAATGGATGTCGAAAAAGCAAGCAAGTGTTCGACTCACACGCAGG
GGAGCTTCCCAAGTCTCTCTTCATTTCATTCATCCTACCCTGTCTGAAAA
AGATAGGTGAAGATGTCAAAGAGAAGCTCGGTCCAAACCTCTCAGTACCC
ATGGAGAAAATTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGGAAC
TCGCCGATGGATCGCAAATCTCGGACACGGTATGTACCCGGACATGTCGC
CTGACCATTTGGAAGCTCTTGTAAATTCTGTTCACAAACATTCGCAAAAA
GATCTGACGTCATGAAGAATGCTTCCCGAACAAAACGTTGATGGGAAATC
TGGACCCGTGCGCTCTTTATGCTGATAAGATTCTATTTGCCAAAGGAGCG
CATTACGCATTCAACGAAATAAACGAGACAAACTATGACGTCATCGCACT
CGACTGGACAATGGATGTCGAAAAAGCAAGCAAGTGTTCGACTCACACGC
AGGGGAGCTTCCCAAGTCTCTCTTCATTTCATTCATCCTACCCTGTCTGA
AAAAGATAGGTGAAGATGTCAAAGAGAAGCTCGGTCCAAACCTCTCAGTA
CCCATGGAGAAAATTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGG
AACTCGCCGATGGATCGCAAATCTCGGACACGGTATGTACCCGGACATGT
CGCCTGACCATTTGGAAGCTCTTGTAAATTCTGTTCACAAACATTCGCAA
AAAGATCTGACGTCATGAAGAATGCTTCCCGAACAAAACGTTGATGGGAA
ATCTGGACCCGTGCGCTCTTTATGCTGATAAGATTCTATTTGCCAAAGGA
GCGCATTACGCATTCAACGAAATAAACGAGACAAACTATGACGTCATCGC
ACTCGACTGGACAATGGATGTCGAAAAAGCAAGCAAGTGTTCGACTCACA
CGCAGGGGAGCTTCCCAAGTCTCTCTTCATTTCATTCATCCTACCCTGTC
TGAAAAAGATAGGTGAAGATGTCAAAGAGAAGCTCGGTCCAAACCTCTCA
GTACCCATGGAGAAAATTGATGAATTAGCAAAGGACTTGGTTGAGAAATT
CGGAACTCGCCGATGGATCGCAAATCTCGGACACGGTATGTACCCGGACA
TGTCGCCTGACCATTTGGAAGCTCTTGTAAATTCTGTTCACAAACATTCG
CAAAAAGATCTGACGTCATGAAGAATGCTTCCCGAACAAAACGTTGATGG
GAAATCTGGACCCGTGCGCTCTTTATGCTGATAAGATTCTATTTGCCAAA
GGAGCGCATTACGCATTCAACGAAATAAACGAGACAAACTATGACGTCAT
CGCACTCGACTGGACAATGGATGTCGAAAAAGCAAGCAAGTGTTCGACTC
ACACGCAGGGGAGCTTCCCAAGTCTCTCTTCATTTCATTCATCCTACCCT
GTCTGAAAAAGATAGGTGAAGATGTCAAAGAGAAGCTCGGTCCAAACCTC
TCAGTACCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029425XLOC_029425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046077-exon-scaffold_105-1575043694:694904..695031TCONS_00046077-exon-scaffold_105-1575043694:694904..695031Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1575043694:694576..694676TCONS_00046077-exon-scaffold_105-1575043694:694576..694676Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1575043694:694339..694402TCONS_00046077-exon-scaffold_105-1575043694:694339..694402Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1575043694:693785..694130TCONS_00046077-exon-scaffold_105-1575043694:693785..694130Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1575043694:693540..693720TCONS_00046077-exon-scaffold_105-1575043694:693540..693720Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1510915933:694904..695031TCONS_00046077-exon-scaffold_105-1510915933:694904..695031Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1510915933:694576..694676TCONS_00046077-exon-scaffold_105-1510915933:694576..694676Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1510915933:694339..694402TCONS_00046077-exon-scaffold_105-1510915933:694339..694402Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1510915933:693785..694130TCONS_00046077-exon-scaffold_105-1510915933:693785..694130Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1510915933:693540..693720TCONS_00046077-exon-scaffold_105-1510915933:693540..693720Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1491911889:694904..695031TCONS_00046077-exon-scaffold_105-1491911889:694904..695031Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1491911889:694576..694676TCONS_00046077-exon-scaffold_105-1491911889:694576..694676Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1491911889:694339..694402TCONS_00046077-exon-scaffold_105-1491911889:694339..694402Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1491911889:693785..694130TCONS_00046077-exon-scaffold_105-1491911889:693785..694130Clytia hemisphaericaexon
TCONS_00046077-exon-scaffold_105-1491911889:693540..693720TCONS_00046077-exon-scaffold_105-1491911889:693540..693720Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046077-proteinTCONS_00046077-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:693540..695031 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
108.314	107.624	173.456	185.23	49.518	37.2801	60.1202	61.7373	57.0553	77.0077	46.5969	29.6631	27.8025	23.3229	27.6211	29.7458	51.5333	46.4394	13.2679	20.0651	25.0445	24.4317	55.381	45.1808	40.2019	42.0359	34.8149	28.148	34.6332	36.2525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000257Uroporphyrinogen_deCOase
Vocabulary: Biological Process
TermDefinition
GO:0006779porphyrin-containing compound biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004853uroporphyrinogen decarboxylase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006779 porphyrin-containing compound biosynthetic process
molecular_function GO:0004853 uroporphyrinogen decarboxylase activity
Blast
[Close]
BLAST of TCONS_00046077 vs. Swiss-Prot (Human)
Match: DCUP (Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 8.070e-46
Identity = 75/148 (50.68%), Postives = 103/148 (69.59%), Query Frame = 3 
Query:    3 QVFDSHAGELPKSLFISFILPCLKKIGEDVKEKLGPN--LSVPMILFAKGAHYAFNEINETNYDVIALDWTMDVEKARECFPNK-TLMGNLDPCALYADKEKIDELAKDLVEKFGTRRWIANLGHGMYPDMSPDHLEALVNSVHKHSQ 437
            Q+F+SHAG L   LF  F LP ++ + + VK +L       VPMI+FAK  H+A  E+ +  Y+V+ LDWT+  +KAREC     TL GNLDPCALYA +E+I +L K +++ FG  R+IANLGHG+YPDM P+H+ A V++VHKHS+
Sbjct:  215 QLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSR 362
The following BLAST results are available for this feature:
BLAST of TCONS_00046077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCUP8.070e-4650.68Uroporphyrinogen decarboxylase OS=Homo sapiens GN=... [more]
back to top