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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046083 ID=TCONS_00046083|Name=TCONS_00046083|organism=Clytia hemisphaerica|type=transcript|length=2592bp GTCTCCACGATAACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAA ACCAACATTGCCTCATTctacgatccagaaaaattgtTAACAGACATAAA CGCTCAATCAGGGTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATG TTCGTGGTCAAAGTGGTCATCAAatcaaaagtgattcaaaaccCAACCTT ATATATTTAAACGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGA TGCAGCTTATTTGAGTGCAATCTTAAGAAGGCTGATGAAAAAGGATGTTC AGTTAACAGTCATATGTAGTACACTTGAAGAACTAGCTATTTTGAAATAT GTGTTTCAACATAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTC TTTAACAGGAAAATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAA CGGGAAAAGTATTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATG GACCATTGTATTTTATTTGCTAGCCCTAAAGATAACGTTCCAAAGAATTT GTACATTGAGATGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTC TTCCTGTAAAGAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGAT AAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAG TACAAATTCCAATTCAAGACAGATTCTTCAAGNATTGTACCACTTGATCA AACCTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATA GCTCGTTATTCAATCACTCCCACATCGACGCAGCAGTAACgaaTCTGCAA CAATTCAGGACTAGACATTTCGGATACGAACTTCGAGACAGTCGAGTGAC AATCGATGGAACAAACTACGATTTTGATGGtaagtttatttttttggaaa taagcAACCTTGATTTTCTGTTATGAACGGTTACGTTGATTTCCCATTTG TTGCACTGTCAAAAATGTtgttggtccagcgcgcagcagaatggaccttt aaaaagcaactgatcgaaaagattttgtctttgtctgggcctgtgcgcgc aataaattaacaagtccaggctaaaccaaccgccgatctataatttttgc cccgcctacccgcgcgatgtttgacctatgttttggattgaattggtagt acagtcaaatttcccggttagattaaagggttgtttcaggtagggtcagg tagggttagggctagggttggggctgggagttaacccctggttagggttt tagcccccgggtagagtttggagtaaataccatgtttataaggaacttta aactccttaatgcagttgttggttaaggcgctggcgttctaatcataggt gctttgtatatagtagtctgaatcgcaaacctctacaaaaccccaggtag tataggtctgtgggttcgaatcccatcagcggcaaaagtttcgaaatttc gggaaatgcatcaaaaactttcaaaacttagcaatacaaagaaagtgtca aagaatagaagctcagagtggaggatgggaaggaaatttttttgcgtcat tTAAGtaacccggtacgaacgacatggttattgccacgtcagctggacct tcacgccgctccggcttcttgtgTATATTTTAATGCTGTACTTGTACTTT CTTGGGAAACGTTCATATTCTCTCACtattaggttccaaataaacggggg gctATTTAGAGCCAAATAAAGGACCTTCCCCTTGAAACCTataaatatta ttaaaaatcaataaaagggGGGGTCCTAATGAGGTCAGGGAGGtttggaa atttaaaaaaaataaacaagcgaTGGGGGACGTTTATTTGGAACCAATGA GTAACTCTTCTTATCTTATTCTTAAGTTTAATGAGCACTTAAGTTTAATG AGCACAATCAGAATATTTTTTTGGAAGACTAAAAAATActtttccaatga taccaaaattTGTTCCTAACTCTCAGGCTACAAGCTTGTACGGCACAAAA ACAATAAACCTTTTCAACAACAGTGCCTTTTTTAAAAAACCTAATAAGGG GTTTTTTCTTGCACgctaatttactcaaatttgacCATATTTTGGTGTAC TGTTAGGGATCGATTGTGAATGTCATTTTGGGTCGGATTCTCGCTCTGCT GTCTctaacagaaaaaaacaaaaattcatacTTTTGGAGACCGGCTACAA GGGGCTCCATGCCACGACAATTTcatctaaaaattgaaaagaatgtTGAA TAATTGGGCTGTCGACCAAACGTACTGTCGAAGAAGTTGAAATCTCAGTT ATTCGTCACCCGGTTGTTCGATAACTTAATTGATCGACATTAACTTTATT CCCTTTcctatttttcattcaaacactTTTTATTCTATTGACTTTATGAT TTGATTATCTGAGAAGATCGGATAATGGATGGGAaatatcatttttaaga aatcaATAAGGGCGGGTTGACGTCACTTTTTAACGTCCCAAAaagaattt tataaaatttgctttgattttGGCACTTACACACTTTTTTTC Run BLAST on NCBI transcript from alignment at scaffold_105:773062..776884- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046083 ID=TCONS_00046083|Name=TCONS_00046083|organism=Clytia hemisphaerica|type=transcript|length=3823bp|location=Sequence derived from alignment at scaffold_105:773062..776884- (Clytia hemisphaerica) GTCTCCACGATAACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAA
ACCAACATTGCCTCATTCTACGATCCAGAAAAATTGTTAACAGACATAAA
CGCTCAATCAGGGTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATG
TTCGTGGTCAAAGTGGTCATCAAATCAAAAGTGATTCAAAACCCAACCTT
ATATATTTAAACGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGA
TGCAGCTTATTTGAGTGCAATCTTAAGAAGGCTGATGAAAAAGGATGTTC
AGTTAACAGTCATATGTAGTACACTTGAAGAACTAGCTATTTTGAAATAT
GTGTTTCAACATAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTC
TTTAACAGGAAAATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAA
CGGGAAAAGTATTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATG
GACCATTGTATTTTATTTGCTAGCCCTAAAGATAACGTTCCAAAGAATTT
GTACATTGAGATGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTC
TTCCTGTAAAGAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGAT
AAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAG
TACAAATTCCAATTCAAGACAGATTCTTCAAGNATTGTACCACTTGATCA
AACCTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATA
GCTCGTTATTCAATCACTCCCACATCGACGCAGCAGTAACGTAAGTAGAA
CTTATTGTATATCGGTACTTTACATGCAATATTTATAGCAACCTTTGTTA
CTTTTTACAACGTAAGTGTTTCATCTTAGTATAGTCTCGAAAGTTTATTA
CTTACAACAGAACCTACACTAAGTGCGTAACGTAATATCATTAGTTCTAA
AAGAATCGAAGATACAGAGCACATATTCTCATTGTAACCTTCATCCGATA
ACATCCCTGTACATAACTAGTCTTGTGATACCAACGGAAGCAGATTTTGA
AAATGCTTTGGTTTTAAAGAAAGTTATTTTTTCTTATTTTTTCAGGAATC
TGCAACAATTCAGGACTAGGTATATTTCCAATGAAATAACTTTTAAACTG
TCCTAAGGGCCATGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAAT
TTAAACCCTACCTCCAGTTTTTGAAGATTTCAGTTACCCGTTCAAAGCTT
TTTAGATAACACAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTC
GTCATTTTTTTTTATAGCACAGAAACTAAACCTTACCTGTCTTCATGAAA
AAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGAGCA
TTTTACACTCCGGGACTGAATTTTGATCGCAGCGCCCTTTTATTGAAGAG
AACGTACTGGCATTTTCGGATTGGGTTCGCATTGTAAATGGTGATGTATG
TACATGTAGGCGGTGGATAAATTAGCAACTAGGTTCTTTAATACCAGAAT
TACGCAAGCCTAACTGTGCCATGGCTGGTTGTGCATCCTCGCTAATTGTC
CCAAAATTAGAGAAGAAAAGAGGTAAGCAGAATCTTGAGCAAACTTTTAC
CTGTCCCAAAGCTATGTCTGTCGAGGGTAAAGGGAGACAACACCCCTTCT
CACAGCCCCACTGGGAAACCTCCCCACTGGGAAAAATGCCCAAAATTTTG
TCCCCACTGAAAATAGATCAGACAAGCCAATCCTAACCGCAAATTATTGT
GCTATTTTTTCCAACTGAACTTTCTTGCTCAAAAACAATGGGATTAAAAT
CCCTGGTCATGAGCAAAATGGGAATATCAATCCCCATTGAGTTTTGGTCT
GCTTTTTTTACTCCCACTGGCTGAAAAAATCTCACCGGGTCTGTGAGAAG
GGTGTGTGAGGCAGGAAAAAAAGATTCAAACAGTAGTAAAACACTCTTGC
TTTCTGCTGGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACATT
TCGGATACGAACTTCGAGACAGTCGAGTGACAATCGATGGAACAAACTAC
GATTTTGATGGTAAGTTTATTTTTTTGGAAATAAGCAACCTTGATTTTCT
GTTATGAACGGTTACGTTGATTTCCCATTTGTTGCACTGTCAAAAATGTT
GTTGGTCCAGCGCGCAGCAGAATGGACCTTTAAAAAGCAACTGATCGAAA
AGATTTTGTCTTTGTCTGGGCCTGTGCGCGCAATAAATTAACAAGTCCAG
GCTAAACCAACCGCCGATCTATAATTTTTGCCCCGCCTACCCGCGCGATG
TTTGACCTATGTTTTGGATTGAATTGGTAGTACAGTCAAATTTCCCGGTT
AGATTAAAGGGTTGTTTCAGGTAGGGTCAGGTAGGGTTAGGGCTAGGGTT
GGGGCTGGGAGTTAACCCCTGGTTAGGGTTTTAGCCCCCGGGTAGAGTTT
GGAGTAAATACCATGTTTATAAGGAACTTTAAACTCCTTAATGCAGTTGT
TGGTTAAGGCGCTGGCGTTCTAATCATAGGTGCTTTGTATATAGTAGTCT
GAATCGCAAACCTCTACAAAACCCCAGGTAGTATAGGTCTGTGGGTTCGA
ATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAATGCATCAAAAACT
TTCAAAACTTAGCAATACAAAGAAAGTGTCAAAGAATAGAAGCTCAGAGT
GGAGGATGGGAAGGAAATTTTTTTGCGTCATTTAAGTAACCCGGTACGAA
CGACATGGTTATTGCCACGTCAGCTGGACCTTCACGCCGCTCCGGCTTCT
TGTGTATATTTTAATGCTGTACTTGTACTTTCTTGGGAAACGTTCATATT
CTCTCACTATTAGGTTCCAAATAAACGGGGGGCTATTTAGAGCCAAATAA
AGGACCTTCCCCTTGAAACCTATAAATATTATTAAAAATCAATAAAAGGG
GGGGTCCTAATGAGGTCAGGGAGGTTTGGAAATTTAAAAAAAATAAACAA
GCGATGGGGGACGTTTATTTGGAACCAATGAGTAACTCTTCTTATCTTAT
TCTTAAGTTTAATGAGCACTTAAGTTTAATGAGCACAATCAGAATATTTT
TTTGGAAGACTAAAAAATACTTTTCCAATGATACCAAAATTTGTTCCTAA
CTCTCAGGCTACAAGCTTGTACGGCACAAAAACAATAAACCTTTTCAACA
ACAGTGCCTTTTTTAAAAAACCTAATAAGGGGTTTTTTCTTGCACGCTAA
TTTACTCAAATTTGACCATATTTTGGTGTACTGTTAGGGATCGATTGTGA
ATGTCATTTTGGGTCGGATTCTCGCTCTGCTGTCTCTAACAGAAAAAAAC
AAAAATTCATACTTTTGGAGACCGGCTACAAGGGGCTCCATGCCACGACA
ATTTCATCTAAAAATTGAAAAGAATGTTGAATAATTGGGCTGTCGACCAA
ACGTACTGTCGAAGAAGTTGAAATCTCAGTTATTCGTCACCCGGTTGTTC
GATAACTTAATTGATCGACATTAACTTTATTCCCTTTCCTATTTTTCATT
CAAACACTTTTTATTCTATTGACTTTATGATTTGATTATCTGAGAAGATC
GGATAATGGATGGGAAATATCATTTTTAAGAAATCAATAAGGGCGGGTTG
ACGTCACTTTTTAACGTCCCAAAAAGAATTTTATAAAATTTGCTTTGATT
TTGGCACTTACACACTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046083-exon-scaffold_105-1575043694:776045..776884 | TCONS_00046083-exon-scaffold_105-1575043694:776045..776884 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1575043694:775716..775739 | TCONS_00046083-exon-scaffold_105-1575043694:775716..775739 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1575043694:773062..774789 | TCONS_00046083-exon-scaffold_105-1575043694:773062..774789 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1510915933:776045..776884 | TCONS_00046083-exon-scaffold_105-1510915933:776045..776884 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1510915933:775716..775739 | TCONS_00046083-exon-scaffold_105-1510915933:775716..775739 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1510915933:773062..774789 | TCONS_00046083-exon-scaffold_105-1510915933:773062..774789 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1491911889:776045..776884 | TCONS_00046083-exon-scaffold_105-1491911889:776045..776884 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1491911889:775716..775739 | TCONS_00046083-exon-scaffold_105-1491911889:775716..775739 | Clytia hemisphaerica | exon |
TCONS_00046083-exon-scaffold_105-1491911889:773062..774789 | TCONS_00046083-exon-scaffold_105-1491911889:773062..774789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_105 | supercontig | scaffold_105:773062..776884 - |
Blast
The following BLAST results are available for this feature:
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