TCONS_00046083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046083
Unique NameTCONS_00046083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046083 ID=TCONS_00046083|Name=TCONS_00046083|organism=Clytia hemisphaerica|type=transcript|length=2592bp
GTCTCCACGATAACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAA
ACCAACATTGCCTCATTctacgatccagaaaaattgtTAACAGACATAAA
CGCTCAATCAGGGTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATG
TTCGTGGTCAAAGTGGTCATCAAatcaaaagtgattcaaaaccCAACCTT
ATATATTTAAACGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGA
TGCAGCTTATTTGAGTGCAATCTTAAGAAGGCTGATGAAAAAGGATGTTC
AGTTAACAGTCATATGTAGTACACTTGAAGAACTAGCTATTTTGAAATAT
GTGTTTCAACATAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTC
TTTAACAGGAAAATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAA
CGGGAAAAGTATTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATG
GACCATTGTATTTTATTTGCTAGCCCTAAAGATAACGTTCCAAAGAATTT
GTACATTGAGATGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTC
TTCCTGTAAAGAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGAT
AAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAG
TACAAATTCCAATTCAAGACAGATTCTTCAAGNATTGTACCACTTGATCA
AACCTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATA
GCTCGTTATTCAATCACTCCCACATCGACGCAGCAGTAACgaaTCTGCAA
CAATTCAGGACTAGACATTTCGGATACGAACTTCGAGACAGTCGAGTGAC
AATCGATGGAACAAACTACGATTTTGATGGtaagtttatttttttggaaa
taagcAACCTTGATTTTCTGTTATGAACGGTTACGTTGATTTCCCATTTG
TTGCACTGTCAAAAATGTtgttggtccagcgcgcagcagaatggaccttt
aaaaagcaactgatcgaaaagattttgtctttgtctgggcctgtgcgcgc
aataaattaacaagtccaggctaaaccaaccgccgatctataatttttgc
cccgcctacccgcgcgatgtttgacctatgttttggattgaattggtagt
acagtcaaatttcccggttagattaaagggttgtttcaggtagggtcagg
tagggttagggctagggttggggctgggagttaacccctggttagggttt
tagcccccgggtagagtttggagtaaataccatgtttataaggaacttta
aactccttaatgcagttgttggttaaggcgctggcgttctaatcataggt
gctttgtatatagtagtctgaatcgcaaacctctacaaaaccccaggtag
tataggtctgtgggttcgaatcccatcagcggcaaaagtttcgaaatttc
gggaaatgcatcaaaaactttcaaaacttagcaatacaaagaaagtgtca
aagaatagaagctcagagtggaggatgggaaggaaatttttttgcgtcat
tTAAGtaacccggtacgaacgacatggttattgccacgtcagctggacct
tcacgccgctccggcttcttgtgTATATTTTAATGCTGTACTTGTACTTT
CTTGGGAAACGTTCATATTCTCTCACtattaggttccaaataaacggggg
gctATTTAGAGCCAAATAAAGGACCTTCCCCTTGAAACCTataaatatta
ttaaaaatcaataaaagggGGGGTCCTAATGAGGTCAGGGAGGtttggaa
atttaaaaaaaataaacaagcgaTGGGGGACGTTTATTTGGAACCAATGA
GTAACTCTTCTTATCTTATTCTTAAGTTTAATGAGCACTTAAGTTTAATG
AGCACAATCAGAATATTTTTTTGGAAGACTAAAAAATActtttccaatga
taccaaaattTGTTCCTAACTCTCAGGCTACAAGCTTGTACGGCACAAAA
ACAATAAACCTTTTCAACAACAGTGCCTTTTTTAAAAAACCTAATAAGGG
GTTTTTTCTTGCACgctaatttactcaaatttgacCATATTTTGGTGTAC
TGTTAGGGATCGATTGTGAATGTCATTTTGGGTCGGATTCTCGCTCTGCT
GTCTctaacagaaaaaaacaaaaattcatacTTTTGGAGACCGGCTACAA
GGGGCTCCATGCCACGACAATTTcatctaaaaattgaaaagaatgtTGAA
TAATTGGGCTGTCGACCAAACGTACTGTCGAAGAAGTTGAAATCTCAGTT
ATTCGTCACCCGGTTGTTCGATAACTTAATTGATCGACATTAACTTTATT
CCCTTTcctatttttcattcaaacactTTTTATTCTATTGACTTTATGAT
TTGATTATCTGAGAAGATCGGATAATGGATGGGAaatatcatttttaaga
aatcaATAAGGGCGGGTTGACGTCACTTTTTAACGTCCCAAAaagaattt
tataaaatttgctttgattttGGCACTTACACACTTTTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_105:773062..776884-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046083 ID=TCONS_00046083|Name=TCONS_00046083|organism=Clytia hemisphaerica|type=transcript|length=3823bp|location=Sequence derived from alignment at scaffold_105:773062..776884- (Clytia hemisphaerica)
GTCTCCACGATAACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAA ACCAACATTGCCTCATTCTACGATCCAGAAAAATTGTTAACAGACATAAA CGCTCAATCAGGGTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATG TTCGTGGTCAAAGTGGTCATCAAATCAAAAGTGATTCAAAACCCAACCTT ATATATTTAAACGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGA TGCAGCTTATTTGAGTGCAATCTTAAGAAGGCTGATGAAAAAGGATGTTC AGTTAACAGTCATATGTAGTACACTTGAAGAACTAGCTATTTTGAAATAT GTGTTTCAACATAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTC TTTAACAGGAAAATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAA CGGGAAAAGTATTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATG GACCATTGTATTTTATTTGCTAGCCCTAAAGATAACGTTCCAAAGAATTT GTACATTGAGATGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTC TTCCTGTAAAGAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGAT AAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAG TACAAATTCCAATTCAAGACAGATTCTTCAAGNATTGTACCACTTGATCA AACCTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATA GCTCGTTATTCAATCACTCCCACATCGACGCAGCAGTAACGTAAGTAGAA CTTATTGTATATCGGTACTTTACATGCAATATTTATAGCAACCTTTGTTA CTTTTTACAACGTAAGTGTTTCATCTTAGTATAGTCTCGAAAGTTTATTA CTTACAACAGAACCTACACTAAGTGCGTAACGTAATATCATTAGTTCTAA AAGAATCGAAGATACAGAGCACATATTCTCATTGTAACCTTCATCCGATA ACATCCCTGTACATAACTAGTCTTGTGATACCAACGGAAGCAGATTTTGA AAATGCTTTGGTTTTAAAGAAAGTTATTTTTTCTTATTTTTTCAGGAATC TGCAACAATTCAGGACTAGGTATATTTCCAATGAAATAACTTTTAAACTG TCCTAAGGGCCATGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAAT TTAAACCCTACCTCCAGTTTTTGAAGATTTCAGTTACCCGTTCAAAGCTT TTTAGATAACACAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTC GTCATTTTTTTTTATAGCACAGAAACTAAACCTTACCTGTCTTCATGAAA AAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGAGCA TTTTACACTCCGGGACTGAATTTTGATCGCAGCGCCCTTTTATTGAAGAG AACGTACTGGCATTTTCGGATTGGGTTCGCATTGTAAATGGTGATGTATG TACATGTAGGCGGTGGATAAATTAGCAACTAGGTTCTTTAATACCAGAAT TACGCAAGCCTAACTGTGCCATGGCTGGTTGTGCATCCTCGCTAATTGTC CCAAAATTAGAGAAGAAAAGAGGTAAGCAGAATCTTGAGCAAACTTTTAC CTGTCCCAAAGCTATGTCTGTCGAGGGTAAAGGGAGACAACACCCCTTCT CACAGCCCCACTGGGAAACCTCCCCACTGGGAAAAATGCCCAAAATTTTG TCCCCACTGAAAATAGATCAGACAAGCCAATCCTAACCGCAAATTATTGT GCTATTTTTTCCAACTGAACTTTCTTGCTCAAAAACAATGGGATTAAAAT CCCTGGTCATGAGCAAAATGGGAATATCAATCCCCATTGAGTTTTGGTCT GCTTTTTTTACTCCCACTGGCTGAAAAAATCTCACCGGGTCTGTGAGAAG GGTGTGTGAGGCAGGAAAAAAAGATTCAAACAGTAGTAAAACACTCTTGC TTTCTGCTGGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACATT TCGGATACGAACTTCGAGACAGTCGAGTGACAATCGATGGAACAAACTAC GATTTTGATGGTAAGTTTATTTTTTTGGAAATAAGCAACCTTGATTTTCT GTTATGAACGGTTACGTTGATTTCCCATTTGTTGCACTGTCAAAAATGTT GTTGGTCCAGCGCGCAGCAGAATGGACCTTTAAAAAGCAACTGATCGAAA AGATTTTGTCTTTGTCTGGGCCTGTGCGCGCAATAAATTAACAAGTCCAG GCTAAACCAACCGCCGATCTATAATTTTTGCCCCGCCTACCCGCGCGATG TTTGACCTATGTTTTGGATTGAATTGGTAGTACAGTCAAATTTCCCGGTT AGATTAAAGGGTTGTTTCAGGTAGGGTCAGGTAGGGTTAGGGCTAGGGTT GGGGCTGGGAGTTAACCCCTGGTTAGGGTTTTAGCCCCCGGGTAGAGTTT GGAGTAAATACCATGTTTATAAGGAACTTTAAACTCCTTAATGCAGTTGT TGGTTAAGGCGCTGGCGTTCTAATCATAGGTGCTTTGTATATAGTAGTCT GAATCGCAAACCTCTACAAAACCCCAGGTAGTATAGGTCTGTGGGTTCGA ATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAATGCATCAAAAACT TTCAAAACTTAGCAATACAAAGAAAGTGTCAAAGAATAGAAGCTCAGAGT GGAGGATGGGAAGGAAATTTTTTTGCGTCATTTAAGTAACCCGGTACGAA CGACATGGTTATTGCCACGTCAGCTGGACCTTCACGCCGCTCCGGCTTCT TGTGTATATTTTAATGCTGTACTTGTACTTTCTTGGGAAACGTTCATATT CTCTCACTATTAGGTTCCAAATAAACGGGGGGCTATTTAGAGCCAAATAA AGGACCTTCCCCTTGAAACCTATAAATATTATTAAAAATCAATAAAAGGG GGGGTCCTAATGAGGTCAGGGAGGTTTGGAAATTTAAAAAAAATAAACAA GCGATGGGGGACGTTTATTTGGAACCAATGAGTAACTCTTCTTATCTTAT TCTTAAGTTTAATGAGCACTTAAGTTTAATGAGCACAATCAGAATATTTT TTTGGAAGACTAAAAAATACTTTTCCAATGATACCAAAATTTGTTCCTAA CTCTCAGGCTACAAGCTTGTACGGCACAAAAACAATAAACCTTTTCAACA ACAGTGCCTTTTTTAAAAAACCTAATAAGGGGTTTTTTCTTGCACGCTAA TTTACTCAAATTTGACCATATTTTGGTGTACTGTTAGGGATCGATTGTGA ATGTCATTTTGGGTCGGATTCTCGCTCTGCTGTCTCTAACAGAAAAAAAC AAAAATTCATACTTTTGGAGACCGGCTACAAGGGGCTCCATGCCACGACA ATTTCATCTAAAAATTGAAAAGAATGTTGAATAATTGGGCTGTCGACCAA ACGTACTGTCGAAGAAGTTGAAATCTCAGTTATTCGTCACCCGGTTGTTC GATAACTTAATTGATCGACATTAACTTTATTCCCTTTCCTATTTTTCATT CAAACACTTTTTATTCTATTGACTTTATGATTTGATTATCTGAGAAGATC GGATAATGGATGGGAAATATCATTTTTAAGAAATCAATAAGGGCGGGTTG ACGTCACTTTTTAACGTCCCAAAAAGAATTTTATAAAATTTGCTTTGATT TTGGCACTTACACACTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029428XLOC_029428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046083-exon-scaffold_105-1575043694:776045..776884TCONS_00046083-exon-scaffold_105-1575043694:776045..776884Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1575043694:775716..775739TCONS_00046083-exon-scaffold_105-1575043694:775716..775739Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1575043694:773062..774789TCONS_00046083-exon-scaffold_105-1575043694:773062..774789Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1510915933:776045..776884TCONS_00046083-exon-scaffold_105-1510915933:776045..776884Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1510915933:775716..775739TCONS_00046083-exon-scaffold_105-1510915933:775716..775739Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1510915933:773062..774789TCONS_00046083-exon-scaffold_105-1510915933:773062..774789Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1491911889:776045..776884TCONS_00046083-exon-scaffold_105-1491911889:776045..776884Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1491911889:775716..775739TCONS_00046083-exon-scaffold_105-1491911889:775716..775739Clytia hemisphaericaexon
TCONS_00046083-exon-scaffold_105-1491911889:773062..774789TCONS_00046083-exon-scaffold_105-1491911889:773062..774789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:773062..776884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102721 0.139047 0.329713 0.249625 0.0363827 0.0910562 3.43791e-08 0 0 0 2.58016e-10 0 0 0.157953 0 0 0 0 0 0 0 2.56136e-10 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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