|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046084 ID=TCONS_00046084|Name=TCONS_00046084|organism=Clytia hemisphaerica|type=transcript|length=3461bp
GTCTCCACGATAACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAA
ACCAACATTGCCTCATTctacgatccagaaaaattgtTAACAGACATAAA
CGCTCAATCAGGGTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATG
TTCGTGGTCAAAGTGGTCATCAAatcaaaagtgattcaaaaccCAACCTT
ATATATTTAAACGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGA
TGCAGCTTATTTGAGTGCAATCTTAAGAAGGCTGATGAAAAAGGATGTTC
AGTTAACAGTCATATGTAGTACACTTGAAGAACTAGCTATTTTGAAATAT
GTGTTTCAACATAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTC
TTTAACAGGAAAATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAA
CGGGAAAAGTATTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATG
GACCATTGTATTTTATTTGCTAGCCCTAAAGATAACGTTCCAAAGAATTT
GTACATTGAGATGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTC
TTCCTGTAAAGAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGAT
AAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAG
TACAAATTCCAATTCAAGACAGATTCTTCAATCATCGAGGATAGCTCGTT
ATTCAATCACTCCCACATCGACGCAGCAGTAACgaaTCTGCAACAATTCA
GGACTAGGTATATTTCCAATGAAATAACTTTTAAACTGTCCTAAGGGCCA
TGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAATTTAAACCCTACC
TCCAGTTTTTGAAGATTTCAGTTACCCGTtcaaagctttttagataacaC
AAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTCgtcatttttttt
tatagcaCAGAAACTAAACCTTACCTGTCTTCATGAAAAAGACTGTTTAG
ATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGAGCATTTTACACTCCG
GGACTGAATTTTGATCGCAGCGCCCTTTTATTGAAGAGAACGTACTGGCA
TTTTCGGATTGGGTTCGCATTGTAAATGGTGATGTATGTACATGTAGGCG
GTGGATAAATTAGCAACTAGGTTCTTTAATACCAGAATTACGCAAGCCTA
ACTGTGCCATGGCTGGTTGTGCATCCTCGCTAATTGTCCCAAAATTAGAG
AAGAAAAGAGGTAAGCAGAATCTTGAGCAAACTTTTACCTGTCCCAAAGC
TATGTCTGTCGAGGGTAAAGGGAGacaacaccccttctcacagccccact
gggaaaccTCCCCACTGGGAAAAAtgcccaaaattttgtccccactgaaa
atagaTCAGACAAGCCAATCCTAACCGCAaattattgtgctattttttcc
aacTGAACTTTCTTGCTCAAAAACAATGGGATTAAAATCCCTGGTCATGA
GCaaaatgggaatatcaatccccattgagttttggtCTGCTTTTTTTact
cccactggctgaaaaaatctcaccgggtctgtgagaagggtgtgtGAGGC
AGGAAAAAAAGATTCAAACAGTAGTAAAACACTCTTGCTTTCTGCTGGGT
CGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACATTTCGGATACGAAC
TTCGAGACAGTCGAGTGACAATCGATGGAACAAACTACGATTTTGATGGt
aagtttatttttttggaaataagcAACCTTGATTTTCTGTTATGAACGGT
TACGTTGATTTCCCATTTGTTGCACTGTCAAAAATGTtgttggtccagcg
cgcagcagaatggacctttaaaaagcaactgatcgaaaagattttgtctt
tgtctgggcctgtgcgcgcaataaattaacaagtccaggctaaaccaacc
gccgatctataatttttgccccgcctacccgcgcgatgtttgacctatgt
tttggattgaattggtagtacagtcaaatttcccggttagattaaagggt
tgtttcaggtagggtcaggtagggttagggctagggttggggctgggagt
taacccctggttagggttttagcccccgggtagagtttggagtaaatacc
atgtttataaggaactttaaactccttaatgcagttgttggttaaggcgc
tggcgttctaatcataggtgctttgtatatagtagtctgaatcgcaaacc
tctacaaaaccccaggtagtataggtctgtgggttcgaatcccatcagcg
gcaaaagtttcgaaatttcgggaaatgcatcaaaaactttcaaaacttag
caatacaaagaaagtgtcaaagaatagaagctcagagtggaggatgggaa
ggaaatttttttgcgtcattTAAGtaacccggtacgaacgacatggttat
tgccacgtcagctggaccttcacgccgctccggcttcttgtgTATATTTT
AATGCTGTACTTGTACTTTCTTGGGAAACGTTCATATTCTCTCACtatta
ggttccaaataaacggggggctATTTAGAGCCAAATAAAGGACCTTCCCC
TTGAAACCTataaatattattaaaaatcaataaaagggGGGGTCCTAATG
AGGTCAGGGAGGtttggaaatttaaaaaaaataaacaagcgaTGGGGGAC
GTTTATTTGGAACCAATGAGTAACTCTTCTTATCTTATTCTTAAGTTTAA
TGAGCACTTAAGTTTAATGAGCACAATCAGAATATTTTTTTGGAAGACTA
AAAAATActtttccaatgataccaaaattTGTTCCTAACTCTCAGGCTAC
AAGCTTGTACGGCACAAAAACAATAAACCTTTTCAACAACAGTGCCTTTT
TTAAAAAACCTAATAAGGGGTTTTTTCTTGCACgctaatttactcaaatt
tgacCATATTTTGGTGTACTGTTAGGGATCGATTGTGAATGTCATTTTGG
GTCGGATTCTCGCTCTGCTGTCTctaacagaaaaaaacaaaaattcatac
TTTTGGAGACCGGCTACAAGGGGCTCCATGCCACGACAATTTcatctaaa
aattgaaaagaatgtTGAATAATTGGGCTGTCGACCAAACGTACTGTCGA
AGAAGTTGAAATCTCAGTTATTCGTCACCCGGTTGTTCGATAACTTAATT
GATCGACATTAACTTTATTCCCTTTcctatttttcattcaaacactTTTT
ATTCTATTGACTTTATGATTTGATTATCTGAGAAGATCGGATAATGGATG
GGAaatatcatttttaagaaatcaATAAGGGCGGGTTGACGTCACTTTTT
AACGTCCCAAAaagaattttataaaatttgctttgattttGGCACTTACA
CACTTTTTTTC Run BLAST on NCBI transcript from alignment at scaffold_105:773062..776884- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046084 ID=TCONS_00046084|Name=TCONS_00046084|organism=Clytia hemisphaerica|type=transcript|length=3823bp|location=Sequence derived from alignment at scaffold_105:773062..776884- (Clytia hemisphaerica)
GTCTCCACGATAACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAA
ACCAACATTGCCTCATTCTACGATCCAGAAAAATTGTTAACAGACATAAA
CGCTCAATCAGGGTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATG
TTCGTGGTCAAAGTGGTCATCAAATCAAAAGTGATTCAAAACCCAACCTT
ATATATTTAAACGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGA
TGCAGCTTATTTGAGTGCAATCTTAAGAAGGCTGATGAAAAAGGATGTTC
AGTTAACAGTCATATGTAGTACACTTGAAGAACTAGCTATTTTGAAATAT
GTGTTTCAACATAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTC
TTTAACAGGAAAATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAA
CGGGAAAAGTATTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATG
GACCATTGTATTTTATTTGCTAGCCCTAAAGATAACGTTCCAAAGAATTT
GTACATTGAGATGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTC
TTCCTGTAAAGAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGAT
AAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAG
TACAAATTCCAATTCAAGACAGATTCTTCAAGNATTGTACCACTTGATCA
AACCTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATA
GCTCGTTATTCAATCACTCCCACATCGACGCAGCAGTAACGTAAGTAGAA
CTTATTGTATATCGGTACTTTACATGCAATATTTATAGCAACCTTTGTTA
CTTTTTACAACGTAAGTGTTTCATCTTAGTATAGTCTCGAAAGTTTATTA
CTTACAACAGAACCTACACTAAGTGCGTAACGTAATATCATTAGTTCTAA
AAGAATCGAAGATACAGAGCACATATTCTCATTGTAACCTTCATCCGATA
ACATCCCTGTACATAACTAGTCTTGTGATACCAACGGAAGCAGATTTTGA
AAATGCTTTGGTTTTAAAGAAAGTTATTTTTTCTTATTTTTTCAGGAATC
TGCAACAATTCAGGACTAGGTATATTTCCAATGAAATAACTTTTAAACTG
TCCTAAGGGCCATGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAAT
TTAAACCCTACCTCCAGTTTTTGAAGATTTCAGTTACCCGTTCAAAGCTT
TTTAGATAACACAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTC
GTCATTTTTTTTTATAGCACAGAAACTAAACCTTACCTGTCTTCATGAAA
AAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGAGCA
TTTTACACTCCGGGACTGAATTTTGATCGCAGCGCCCTTTTATTGAAGAG
AACGTACTGGCATTTTCGGATTGGGTTCGCATTGTAAATGGTGATGTATG
TACATGTAGGCGGTGGATAAATTAGCAACTAGGTTCTTTAATACCAGAAT
TACGCAAGCCTAACTGTGCCATGGCTGGTTGTGCATCCTCGCTAATTGTC
CCAAAATTAGAGAAGAAAAGAGGTAAGCAGAATCTTGAGCAAACTTTTAC
CTGTCCCAAAGCTATGTCTGTCGAGGGTAAAGGGAGACAACACCCCTTCT
CACAGCCCCACTGGGAAACCTCCCCACTGGGAAAAATGCCCAAAATTTTG
TCCCCACTGAAAATAGATCAGACAAGCCAATCCTAACCGCAAATTATTGT
GCTATTTTTTCCAACTGAACTTTCTTGCTCAAAAACAATGGGATTAAAAT
CCCTGGTCATGAGCAAAATGGGAATATCAATCCCCATTGAGTTTTGGTCT
GCTTTTTTTACTCCCACTGGCTGAAAAAATCTCACCGGGTCTGTGAGAAG
GGTGTGTGAGGCAGGAAAAAAAGATTCAAACAGTAGTAAAACACTCTTGC
TTTCTGCTGGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACATT
TCGGATACGAACTTCGAGACAGTCGAGTGACAATCGATGGAACAAACTAC
GATTTTGATGGTAAGTTTATTTTTTTGGAAATAAGCAACCTTGATTTTCT
GTTATGAACGGTTACGTTGATTTCCCATTTGTTGCACTGTCAAAAATGTT
GTTGGTCCAGCGCGCAGCAGAATGGACCTTTAAAAAGCAACTGATCGAAA
AGATTTTGTCTTTGTCTGGGCCTGTGCGCGCAATAAATTAACAAGTCCAG
GCTAAACCAACCGCCGATCTATAATTTTTGCCCCGCCTACCCGCGCGATG
TTTGACCTATGTTTTGGATTGAATTGGTAGTACAGTCAAATTTCCCGGTT
AGATTAAAGGGTTGTTTCAGGTAGGGTCAGGTAGGGTTAGGGCTAGGGTT
GGGGCTGGGAGTTAACCCCTGGTTAGGGTTTTAGCCCCCGGGTAGAGTTT
GGAGTAAATACCATGTTTATAAGGAACTTTAAACTCCTTAATGCAGTTGT
TGGTTAAGGCGCTGGCGTTCTAATCATAGGTGCTTTGTATATAGTAGTCT
GAATCGCAAACCTCTACAAAACCCCAGGTAGTATAGGTCTGTGGGTTCGA
ATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAATGCATCAAAAACT
TTCAAAACTTAGCAATACAAAGAAAGTGTCAAAGAATAGAAGCTCAGAGT
GGAGGATGGGAAGGAAATTTTTTTGCGTCATTTAAGTAACCCGGTACGAA
CGACATGGTTATTGCCACGTCAGCTGGACCTTCACGCCGCTCCGGCTTCT
TGTGTATATTTTAATGCTGTACTTGTACTTTCTTGGGAAACGTTCATATT
CTCTCACTATTAGGTTCCAAATAAACGGGGGGCTATTTAGAGCCAAATAA
AGGACCTTCCCCTTGAAACCTATAAATATTATTAAAAATCAATAAAAGGG
GGGGTCCTAATGAGGTCAGGGAGGTTTGGAAATTTAAAAAAAATAAACAA
GCGATGGGGGACGTTTATTTGGAACCAATGAGTAACTCTTCTTATCTTAT
TCTTAAGTTTAATGAGCACTTAAGTTTAATGAGCACAATCAGAATATTTT
TTTGGAAGACTAAAAAATACTTTTCCAATGATACCAAAATTTGTTCCTAA
CTCTCAGGCTACAAGCTTGTACGGCACAAAAACAATAAACCTTTTCAACA
ACAGTGCCTTTTTTAAAAAACCTAATAAGGGGTTTTTTCTTGCACGCTAA
TTTACTCAAATTTGACCATATTTTGGTGTACTGTTAGGGATCGATTGTGA
ATGTCATTTTGGGTCGGATTCTCGCTCTGCTGTCTCTAACAGAAAAAAAC
AAAAATTCATACTTTTGGAGACCGGCTACAAGGGGCTCCATGCCACGACA
ATTTCATCTAAAAATTGAAAAGAATGTTGAATAATTGGGCTGTCGACCAA
ACGTACTGTCGAAGAAGTTGAAATCTCAGTTATTCGTCACCCGGTTGTTC
GATAACTTAATTGATCGACATTAACTTTATTCCCTTTCCTATTTTTCATT
CAAACACTTTTTATTCTATTGACTTTATGATTTGATTATCTGAGAAGATC
GGATAATGGATGGGAAATATCATTTTTAAGAAATCAATAAGGGCGGGTTG
ACGTCACTTTTTAACGTCCCAAAAAGAATTTTATAAAATTTGCTTTGATT
TTGGCACTTACACACTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046084-exon-scaffold_105-1575043694:776154..776884 | TCONS_00046084-exon-scaffold_105-1575043694:776154..776884 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1575043694:776045..776096 | TCONS_00046084-exon-scaffold_105-1575043694:776045..776096 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1575043694:773062..775739 | TCONS_00046084-exon-scaffold_105-1575043694:773062..775739 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1510915933:776154..776884 | TCONS_00046084-exon-scaffold_105-1510915933:776154..776884 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1510915933:776045..776096 | TCONS_00046084-exon-scaffold_105-1510915933:776045..776096 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1510915933:773062..775739 | TCONS_00046084-exon-scaffold_105-1510915933:773062..775739 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1491911889:776154..776884 | TCONS_00046084-exon-scaffold_105-1491911889:776154..776884 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1491911889:776045..776096 | TCONS_00046084-exon-scaffold_105-1491911889:776045..776096 | Clytia hemisphaerica | exon |
| TCONS_00046084-exon-scaffold_105-1491911889:773062..775739 | TCONS_00046084-exon-scaffold_105-1491911889:773062..775739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:773062..776884 - |
Blast
The following BLAST results are available for this feature:
|
