TCONS_00046085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046085
Unique NameTCONS_00046085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046085 ID=TCONS_00046085|Name=TCONS_00046085|organism=Clytia hemisphaerica|type=transcript|length=347bp
NATCGGTGATGCACTAGAAGGATCAACAATCGATATTTCGGATGTTTACA
ATATGATGTATCCACCGCGTATCAATCTTTGTCGAGTATTGGAATATCTT
TATTCggataaaaaaaaacgtgtcgGTTTTATGATCGACGAGTTCCCTGG
TGATTTTCTCACAAACAAATACGCTGAAAACCTCAAGGAAAGCCTCGTAA
AGAATTTCCAGGATACAACTGTCATTCTTGCGCTCCAAAGtgtagaaaaa
aatcgaaaagttgTCAAATCAGGATTTTTCAGTGACGATGTCAAGCAAGT
TGAGAGATGCGACTACCATCAAACCGGTATGAAAGTCTTCACTCTNN
Run BLAST on NCBI

protein sequence of TCONS_00046085-protein

>TCONS_00046085-protein ID=TCONS_00046085-protein|Name=TCONS_00046085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
IGDALEGSTIDISDVYNMMYPPRINLCRVLEYLYSDKKKRVGFMIDEFPG
DFLTNKYAENLKESLVKNFQDTTVILALQSVEKNRKVVKSGFFSDDVKQV
ERCDYHQTGMKVFTX
Run BLAST on NCBI

transcript from alignment at scaffold_105:777648..778279-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046085 ID=TCONS_00046085|Name=TCONS_00046085|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at scaffold_105:777648..778279- (Clytia hemisphaerica)
NATCGGTGATGCACTAGAAGGATCAACAATCGATATTTCGGATGTTTACA
ATATGATGTATCCACCGCGTATCAATCTTTGTCGAGTATTGGAATATCTT
TATTCGGATAAAAAAAAACGTGTCGGTTTTATGATCGACGAGTTCCCTGG
TGATTTTCTCACAAACAAATACGCTGAAAACCTCAAGGAAAGCCTCGTAA
AGAATTTCCAGGATACAACTGTCATTCTTGCGCTCCAAAGTGTAGAAAAA
AATCGAAAAGTTGTCAAATCAGGATTTTTCAGTGGTAAGTCATTTTTGAA
CTTTGCGTAGACCACAAAAATGTCTTATGTAATCTTCTTTTTTACTCATA
TTTCATTTTGTAGTTTGAAGAAATTGCGATAGATCCTAAGCTAATAGAGT
AGACCTGTAGACCATGTCTCGTATCCTTTGATATGTTAAATGGAAGAGAC
TATTTTGCGAGACTATTGCATATACTACTTTGCTTTTTGAAGCAAGCGAA
CCATTCACTTCACCATGCAATATTTTGCATAAAAACGGTTATTCAATTTT
TATCGAATTCCTTTTGTAGACGATGTCAAGCAAGTTGAGAGATGCGACTA
CCATCAAACCGGTATGAAAGTCTTCACTCTNN

Coding sequence (CDS) from alignment at scaffold_105:777648..778279-

>TCONS_00046085 ID=TCONS_00046085|Name=TCONS_00046085|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_105:777648..778279- (Clytia hemisphaerica)
ACGATGTCAAGCAAGTTGAGAGATGCGACTACCATCAAACCGGTATGAAA
GTCTTCACTCTNATCGGTGATGCACTAGAAGGATCAACAATCGATATTTC
GGATGTTTACAATATGATGTATCCACCGCGTATCAATCTTTGTCGAGTAT
TGGAATATCTTTATTCGGATAAAAAAAAACGTGTCGGTTTTATGATCGAC
GAGTTCCCTGGTGATTTTCTCACAAACAAATACGCTGAAAACCTCAAGGA
AAGCCTCGTAAAGAATTTCCAGGATACAACTGTCATTCTTGCGCTCCAAA
GTGTAGAAAAAAATCGAAAAGTTGTCAAATCAGGATTTTTCAGTGACGAT
GTCAAGCAAGTTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTCTT
CACTCTNATCGGTGATGCACTAGAAGGATCAACAATCGATATTTCGGATG
TTTACAATATGATGTATCCACCGCGTATCAATCTTTGTCGAGTATTGGAA
TATCTTTATTCGGATAAAAAAAAACGTGTCGGTTTTATGATCGACGAGTT
CCCTGGTGATTTTCTCACAAACAAATACGCTGAAAACCTCAAGGAAAGCC
TCGTAAAGAATTTCCAGGATACAACTGTCATTCTTGCGCTCCAAAGTGTA
GAAAAAAATCGAAAAGTTGTCAAATCAGGATTTTTCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029429XLOC_029429Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046085-proteinTCONS_00046085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046085-exon-scaffold_105-1575043694:777996..778279TCONS_00046085-exon-scaffold_105-1575043694:777996..778279Clytia hemisphaericaexon
TCONS_00046085-exon-scaffold_105-1575043694:777648..777710TCONS_00046085-exon-scaffold_105-1575043694:777648..777710Clytia hemisphaericaexon
TCONS_00046085-exon-scaffold_105-1510915933:777996..778279TCONS_00046085-exon-scaffold_105-1510915933:777996..778279Clytia hemisphaericaexon
TCONS_00046085-exon-scaffold_105-1510915933:777648..777710TCONS_00046085-exon-scaffold_105-1510915933:777648..777710Clytia hemisphaericaexon
TCONS_00046085-exon-scaffold_105-1491911889:777996..778279TCONS_00046085-exon-scaffold_105-1491911889:777996..778279Clytia hemisphaericaexon
TCONS_00046085-exon-scaffold_105-1491911889:777648..777710TCONS_00046085-exon-scaffold_105-1491911889:777648..777710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:777648..778279 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.250698	0	0	0	0.102357	2.0776	5.03443	2.07027	4.85829	4.04762	2.67337	16.0396	14.0027	15.8412	22.6995	17.9576	20.2891	6.35608	16.8714	15.9604	17.8437	9.83341	12.7291	10.8713	9.13524	110.201	75.1816	65.1013	74.8601
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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